Wall clock time and date at job start Fri Apr 10 2020 22:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35723 * 116.99512 * 2 1 4 4 C 1.38900 * 119.65225 * 180.27558 * 3 2 1 5 5 C 1.38385 * 119.13444 * 180.22850 * 4 3 2 6 6 C 1.50701 * 120.76457 * 179.77788 * 5 4 3 7 7 H 1.09002 * 109.47060 * 219.71867 * 6 5 4 8 8 C 1.52997 * 109.47212 * 99.71812 * 6 5 4 9 9 N 1.46896 * 109.47239 * 339.72021 * 6 5 4 10 10 C 1.46901 * 110.99913 * 205.00362 * 9 6 5 11 11 C 1.53002 * 109.47317 * 180.02562 * 10 9 6 12 12 C 1.53009 * 109.46826 * 299.99657 * 11 10 9 13 13 C 1.53003 * 109.47451 * 59.99229 * 11 10 9 14 14 C 1.52991 * 109.47310 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47479 * 179.97438 * 14 11 10 16 16 H 1.08007 * 119.99696 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00420 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00027 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00040 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47016 * 89.99743 * 19 17 15 21 21 H 1.48496 * 109.47390 * 209.99909 * 19 17 15 22 22 H 1.48500 * 109.47230 * 330.00126 * 19 17 15 23 23 C 1.38997 * 118.46625 * 359.50073 * 5 4 3 24 24 F 1.35100 * 120.38084 * 180.27146 * 23 5 4 25 25 C 1.38253 * 119.23706 * 0.25703 * 23 5 4 26 26 N 1.31978 * 120.80116 * 359.97438 * 25 23 5 27 27 H 1.08995 * 109.47162 * 300.00110 * 1 2 3 28 28 H 1.09000 * 109.47143 * 60.00032 * 1 2 3 29 29 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.43241 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 32 32 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 33 33 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 34 34 H 1.00896 * 111.00728 * 81.04506 * 9 6 5 35 35 H 1.09007 * 109.47248 * 299.99411 * 10 9 6 36 36 H 1.08990 * 109.47767 * 59.99672 * 10 9 6 37 37 H 1.08995 * 109.47213 * 59.99722 * 12 11 10 38 38 H 1.08998 * 109.47079 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46521 * 300.00017 * 12 11 10 40 40 H 1.09001 * 109.46701 * 60.00158 * 13 11 10 41 41 H 1.08994 * 109.46989 * 180.02562 * 13 11 10 42 42 H 1.08995 * 109.47035 * 300.00551 * 13 11 10 43 43 H 1.08998 * 109.47265 * 299.99539 * 14 11 10 44 44 H 1.09000 * 109.47802 * 59.99535 * 14 11 10 45 45 H 0.96999 * 120.00260 * 179.97438 * 18 17 15 46 46 H 1.08003 * 119.59694 * 180.02562 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4326 1.2738 -0.0058 5 6 4.0496 2.5124 -0.0009 6 6 5.5524 2.6251 -0.0019 7 1 5.8563 3.4376 0.6581 8 6 6.0414 2.9123 -1.4229 9 7 6.1383 1.3641 0.4719 10 6 7.4731 1.5859 1.0437 11 6 8.0500 0.2529 1.5246 12 6 7.1310 -0.3452 2.5918 13 6 8.1554 -0.7132 0.3429 14 6 9.4405 0.4838 2.1195 15 6 10.0084 -0.8290 2.5937 16 1 9.4347 -1.7373 2.4823 17 6 11.2604 -0.8708 3.1698 18 7 11.7557 -2.0165 3.5841 19 14 12.2529 0.7000 3.3619 20 1 11.9428 1.3242 4.6733 21 1 13.7018 0.3813 3.2957 22 1 11.9031 1.6433 2.2697 23 6 3.2513 3.6503 -0.0010 24 9 3.8129 4.8790 -0.0018 25 6 1.8759 3.5101 -0.0005 26 7 1.3185 2.3138 -0.0004 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.0222 0.3689 -0.0099 31 1 5.7375 2.0998 -2.0829 32 1 5.6067 3.8479 -1.7747 33 1 7.1283 2.9942 -1.4237 34 1 6.1714 0.6798 -0.2688 35 1 8.1280 2.0115 0.2833 36 1 7.3982 2.2744 1.8853 37 1 6.1406 -0.5097 2.1676 38 1 7.5417 -1.2950 2.9340 39 1 7.0559 0.3431 3.4336 40 1 8.8101 -0.2872 -0.4174 41 1 8.5659 -1.6630 0.6856 42 1 7.1650 -0.8778 -0.0813 43 1 10.0949 0.9096 1.3590 44 1 9.3658 1.1722 2.9613 45 1 12.6367 -2.0459 3.9890 46 1 1.2500 4.3903 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348219644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:50 Heat of formation + Delta-G solvation = -57.391876 kcal Electronic energy + Delta-G solvation = -26084.584007 eV Core-core repulsion = 22309.892555 eV Total energy + Delta-G solvation = -3774.691451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.08457 -40.87083 -38.60511 -37.75636 -35.81155 -32.68634 -31.82998 -30.66846 -29.39775 -27.53320 -27.46902 -26.40119 -25.43081 -24.56633 -23.35096 -22.01155 -21.06841 -18.50478 -18.11527 -17.71004 -17.44797 -16.77845 -16.41731 -15.71135 -15.38171 -15.30232 -14.87316 -14.61767 -14.31226 -14.02044 -13.81323 -13.47910 -13.40341 -13.28394 -12.97652 -12.83838 -12.56315 -12.30256 -12.16183 -12.06955 -11.82209 -11.50075 -11.34836 -11.10150 -10.97167 -10.87222 -10.51900 -10.41592 -9.99806 -9.85398 -9.79383 -9.70671 -9.31352 -8.92459 -8.61334 -8.50251 -8.32116 -6.00465 -3.96758 0.76611 0.83395 2.81180 3.31801 3.34710 3.39580 3.42317 3.80749 3.93748 4.10598 4.46882 4.47711 4.64423 4.90174 4.93036 5.00310 5.01697 5.05615 5.28772 5.32371 5.36227 5.39248 5.48559 5.56769 5.63137 5.71073 5.81751 5.86341 5.96297 6.10302 6.15472 6.20757 6.37741 6.56702 6.66209 6.78353 6.94063 7.02778 7.08975 7.15158 7.22494 7.30712 7.40806 7.44886 7.51195 7.84488 8.59014 9.05448 9.62598 11.12639 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.003093 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.755052 B = 9050.180184 C = 9960.283119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.302 6.302 3 C 0.310 3.690 4 C -0.136 4.136 5 C -0.021 4.021 6 C 0.120 3.880 7 H 0.097 0.903 8 C -0.177 4.177 9 N -0.678 5.678 10 C 0.068 3.932 11 C -0.048 4.048 12 C -0.118 4.118 13 C -0.131 4.131 14 C -0.004 4.004 15 C -0.507 4.507 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.009 3.991 24 F -0.131 7.131 25 C 0.111 3.889 26 N -0.522 5.522 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.344 0.656 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.012 0.988 44 H 0.010 0.990 45 H 0.261 0.739 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 10.056 -10.473 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.131 3.869 4 C -0.157 4.157 5 C -0.029 4.029 6 C 0.009 3.991 7 H 0.115 0.885 8 C -0.236 4.236 9 N -0.310 5.310 10 C -0.060 4.060 11 C -0.049 4.049 12 C -0.176 4.176 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.545 4.545 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.014 4.014 24 F -0.110 7.110 25 C -0.046 4.046 26 N -0.246 5.246 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.176 0.824 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.837 9.668 -9.777 25.806 hybrid contribution 1.901 1.436 -0.538 2.442 sum -19.937 11.104 -10.316 25.043 Atomic orbital electron populations 1.22878 0.77182 1.03110 1.02377 1.86292 1.22885 1.23991 1.87723 1.19893 0.89454 0.84636 0.92936 1.20866 0.91245 0.99307 1.04235 1.20229 0.96765 0.91051 0.94893 1.20356 0.88099 0.94573 0.96056 0.88481 1.22448 1.02247 1.02538 0.96328 1.60612 1.24698 1.08153 1.37497 1.22194 0.86790 0.99089 0.97963 1.20426 0.96720 0.92180 0.95561 1.21622 0.97544 1.01086 0.97305 1.21785 0.98808 1.01123 0.97091 1.19623 0.91454 0.97826 0.95284 1.21131 1.01368 0.93622 1.38380 0.90401 1.25016 0.97646 0.95674 0.95245 1.69909 1.17888 1.24874 1.41837 0.86851 0.79337 0.84574 0.78905 1.20446 1.21596 1.19195 1.18386 0.92447 0.80512 1.10025 1.91495 1.85408 1.39731 1.94338 1.22344 0.90703 0.94965 0.96570 1.67306 1.40111 0.98101 1.19054 0.92252 0.92350 0.88490 0.82386 0.91992 0.91846 0.91286 0.83567 0.95392 0.91374 0.93653 0.92078 0.94221 0.94088 0.91078 0.94607 0.96928 0.97157 0.92884 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.37 10.48 -18.88 -0.20 -3.57 16 3 C 0.31 3.62 7.49 -17.14 -0.13 3.50 16 4 C -0.14 -1.56 9.33 -39.28 -0.37 -1.93 16 5 C -0.02 -0.23 5.12 -104.29 -0.53 -0.77 16 6 C 0.12 1.34 2.58 -68.87 -0.18 1.17 16 7 H 0.10 1.15 7.67 -51.93 -0.40 0.75 16 8 C -0.18 -1.73 9.14 37.16 0.34 -1.39 16 9 N -0.68 -8.57 4.36 -107.95 -0.47 -9.04 16 10 C 0.07 1.03 4.45 -3.82 -0.02 1.02 16 11 C -0.05 -0.89 0.60 -154.51 -0.09 -0.98 16 12 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 13 C -0.13 -2.28 7.89 37.16 0.29 -1.99 16 14 C 0.00 -0.09 3.11 -27.89 -0.09 -0.18 16 15 C -0.51 -13.79 8.20 -34.44 -0.28 -14.07 16 16 H 0.08 2.26 5.92 -52.48 -0.31 1.95 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -27.61 13.96 55.43 0.77 -26.83 16 19 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 23 C 0.01 0.09 7.29 -39.29 -0.29 -0.19 16 24 F -0.13 -1.43 16.79 2.25 0.04 -1.39 16 25 C 0.11 1.09 11.16 -17.48 -0.20 0.90 16 26 N -0.52 -5.82 9.21 -13.28 -0.12 -5.94 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.16 1.78 6.98 -52.49 -0.37 1.41 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.69 7.45 -51.93 -0.39 0.31 16 34 H 0.34 4.11 6.11 -39.29 -0.24 3.87 16 35 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 36 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 37 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 38 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 42 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 43 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 44 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -30.22 368.38 -6.62 -36.84 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.24 Total: 1.16 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.28 Total: -13.71 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.18 Total: -41.81 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.20 Total: -3.57 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.22 -6.62 -36.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348219644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.552 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds