Wall clock time and date at job start Fri Apr 10 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35723 * 116.99512 * 2 1 4 4 C 1.38900 * 119.65225 * 180.27558 * 3 2 1 5 5 C 1.38385 * 119.13444 * 180.22850 * 4 3 2 6 6 C 1.50701 * 120.76457 * 179.77788 * 5 4 3 7 7 H 1.09002 * 109.47060 * 219.71867 * 6 5 4 8 8 C 1.52997 * 109.47212 * 99.71812 * 6 5 4 9 9 N 1.46896 * 109.47239 * 339.72021 * 6 5 4 10 10 C 1.46901 * 110.99913 * 205.00362 * 9 6 5 11 11 C 1.53002 * 109.47317 * 180.02562 * 10 9 6 12 12 C 1.53009 * 109.46826 * 299.99657 * 11 10 9 13 13 C 1.53003 * 109.47451 * 59.99229 * 11 10 9 14 14 C 1.52991 * 109.47310 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47479 * 179.97438 * 14 11 10 16 16 H 1.08007 * 119.99696 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00420 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00027 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00040 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47016 * 89.99743 * 19 17 15 21 21 H 1.48496 * 109.47390 * 209.99909 * 19 17 15 22 22 H 1.48500 * 109.47230 * 330.00126 * 19 17 15 23 23 C 1.38997 * 118.46625 * 359.50073 * 5 4 3 24 24 F 1.35100 * 120.38084 * 180.27146 * 23 5 4 25 25 C 1.38253 * 119.23706 * 0.25703 * 23 5 4 26 26 N 1.31978 * 120.80116 * 359.97438 * 25 23 5 27 27 H 1.08995 * 109.47162 * 300.00110 * 1 2 3 28 28 H 1.09000 * 109.47143 * 60.00032 * 1 2 3 29 29 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.43241 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 32 32 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 33 33 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 34 34 H 1.00896 * 111.00728 * 81.04506 * 9 6 5 35 35 H 1.09007 * 109.47248 * 299.99411 * 10 9 6 36 36 H 1.08990 * 109.47767 * 59.99672 * 10 9 6 37 37 H 1.08995 * 109.47213 * 59.99722 * 12 11 10 38 38 H 1.08998 * 109.47079 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46521 * 300.00017 * 12 11 10 40 40 H 1.09001 * 109.46701 * 60.00158 * 13 11 10 41 41 H 1.08994 * 109.46989 * 180.02562 * 13 11 10 42 42 H 1.08995 * 109.47035 * 300.00551 * 13 11 10 43 43 H 1.08998 * 109.47265 * 299.99539 * 14 11 10 44 44 H 1.09000 * 109.47802 * 59.99535 * 14 11 10 45 45 H 0.96999 * 120.00260 * 179.97438 * 18 17 15 46 46 H 1.08003 * 119.59694 * 180.02562 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4326 1.2738 -0.0058 5 6 4.0496 2.5124 -0.0009 6 6 5.5524 2.6251 -0.0019 7 1 5.8563 3.4376 0.6581 8 6 6.0414 2.9123 -1.4229 9 7 6.1383 1.3641 0.4719 10 6 7.4731 1.5859 1.0437 11 6 8.0500 0.2529 1.5246 12 6 7.1310 -0.3452 2.5918 13 6 8.1554 -0.7132 0.3429 14 6 9.4405 0.4838 2.1195 15 6 10.0084 -0.8290 2.5937 16 1 9.4347 -1.7373 2.4823 17 6 11.2604 -0.8708 3.1698 18 7 11.7557 -2.0165 3.5841 19 14 12.2529 0.7000 3.3619 20 1 11.9428 1.3242 4.6733 21 1 13.7018 0.3813 3.2957 22 1 11.9031 1.6433 2.2697 23 6 3.2513 3.6503 -0.0010 24 9 3.8129 4.8790 -0.0018 25 6 1.8759 3.5101 -0.0005 26 7 1.3185 2.3138 -0.0004 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.0222 0.3689 -0.0099 31 1 5.7375 2.0998 -2.0829 32 1 5.6067 3.8479 -1.7747 33 1 7.1283 2.9942 -1.4237 34 1 6.1714 0.6798 -0.2688 35 1 8.1280 2.0115 0.2833 36 1 7.3982 2.2744 1.8853 37 1 6.1406 -0.5097 2.1676 38 1 7.5417 -1.2950 2.9340 39 1 7.0559 0.3431 3.4336 40 1 8.8101 -0.2872 -0.4174 41 1 8.5659 -1.6630 0.6856 42 1 7.1650 -0.8778 -0.0813 43 1 10.0949 0.9096 1.3590 44 1 9.3658 1.1722 2.9613 45 1 12.6367 -2.0459 3.9890 46 1 1.2500 4.3903 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348219644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:49 Heat of formation + Delta-G solvation = -76.816601 kcal Electronic energy + Delta-G solvation = -26085.426326 eV Core-core repulsion = 22309.892555 eV Total energy + Delta-G solvation = -3775.533770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90099 -41.67673 -39.66458 -38.77043 -37.00212 -34.53558 -33.04905 -31.49806 -30.47844 -29.25984 -28.14345 -27.89599 -26.69159 -25.43153 -24.46506 -23.54190 -21.96724 -19.71646 -19.06334 -18.85459 -18.54916 -18.42904 -17.20168 -16.53642 -16.46660 -16.37111 -16.05658 -15.82767 -15.44631 -15.25669 -14.90775 -14.68550 -14.54456 -14.35443 -14.16984 -14.07917 -13.72615 -13.58899 -13.47946 -12.96642 -12.79228 -12.77003 -12.67212 -12.44120 -12.32004 -12.20457 -12.06773 -12.04878 -11.70191 -11.35367 -11.02902 -10.87470 -10.73853 -10.68748 -10.63240 -9.44127 -9.32423 -8.20452 -6.20545 -0.04153 0.01060 1.36911 1.38142 1.48938 2.08046 2.40444 2.53077 2.92495 3.13952 3.14876 3.27069 3.59785 3.84113 4.03550 4.11079 4.16950 4.21931 4.25415 4.34853 4.41591 4.46528 4.54574 4.64102 4.69332 4.77446 4.78841 4.85459 4.89092 4.95850 5.03800 5.07925 5.14311 5.16268 5.21678 5.35973 5.40276 5.48017 5.54820 5.64049 5.78018 5.83943 6.04295 6.17713 6.42387 6.46885 6.64769 6.87278 7.41957 8.95846 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.003093 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.755052 B = 9050.180184 C = 9960.283119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.300 3.700 4 C -0.145 4.145 5 C -0.023 4.023 6 C 0.124 3.876 7 H 0.093 0.907 8 C -0.171 4.171 9 N -0.678 5.678 10 C 0.081 3.919 11 C -0.047 4.047 12 C -0.110 4.110 13 C -0.125 4.125 14 C -0.003 4.003 15 C -0.502 4.502 16 H 0.044 0.956 17 C 0.000 4.000 18 N -0.956 5.956 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.247 1.247 23 C 0.002 3.998 24 F -0.132 7.132 25 C 0.116 3.884 26 N -0.529 5.529 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.350 0.650 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.015 0.985 44 H 0.010 0.990 45 H 0.262 0.738 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.252 12.380 -11.683 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.121 3.879 4 C -0.166 4.166 5 C -0.032 4.032 6 C 0.013 3.987 7 H 0.111 0.889 8 C -0.230 4.230 9 N -0.310 5.310 10 C -0.047 4.047 11 C -0.048 4.048 12 C -0.167 4.167 13 C -0.182 4.182 14 C -0.041 4.041 15 C -0.540 4.540 16 H 0.063 0.937 17 C -0.196 4.196 18 N -0.598 5.598 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.216 1.216 22 H -0.170 1.170 23 C -0.020 4.020 24 F -0.111 7.111 25 C -0.041 4.041 26 N -0.253 5.253 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.176 0.824 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.171 0.829 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -23.216 12.000 -11.004 28.357 hybrid contribution 2.193 0.645 -0.171 2.292 sum -21.024 12.645 -11.175 26.959 Atomic orbital electron populations 1.23090 0.75654 1.04723 1.02437 1.86273 1.24502 1.23987 1.87640 1.20060 0.89740 0.85018 0.93057 1.20883 0.91358 0.99389 1.04960 1.20236 0.96710 0.91235 0.95011 1.20324 0.88053 0.93476 0.96808 0.88899 1.22390 1.02153 1.03093 0.95360 1.60499 1.23114 1.09232 1.38147 1.21898 0.88048 0.96502 0.98292 1.20344 0.94376 0.94449 0.95619 1.21523 0.98543 0.99183 0.97447 1.21698 1.00612 0.99027 0.96849 1.19597 0.93983 0.95158 0.95380 1.21446 1.00881 0.94572 1.37113 0.93746 1.25924 0.99211 0.99005 0.95413 1.70069 1.18523 1.27432 1.43773 0.85807 0.77448 0.80656 0.79591 1.19812 1.21606 1.17045 1.18450 0.92814 0.80305 1.10418 1.91493 1.85469 1.39733 1.94392 1.22803 0.90796 0.95435 0.95032 1.67372 1.40226 0.98364 1.19360 0.92389 0.92026 0.86200 0.82449 0.91366 0.91270 0.91306 0.82929 0.94518 0.91572 0.91434 0.95459 0.94575 0.93462 0.94645 0.91393 0.96656 0.97142 0.92957 0.78675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.68 16 2 O -0.32 -6.68 10.48 -90.46 -0.95 -7.63 16 3 C 0.30 6.58 7.49 84.79 0.63 7.22 16 4 C -0.15 -3.10 9.33 22.46 0.21 -2.89 16 5 C -0.02 -0.47 5.12 -19.65 -0.10 -0.57 16 6 C 0.12 2.47 2.58 44.17 0.11 2.59 16 7 H 0.09 1.97 7.67 -2.39 -0.02 1.96 16 8 C -0.17 -2.89 9.14 71.98 0.66 -2.23 16 9 N -0.68 -15.46 4.36 -495.46 -2.16 -17.62 16 10 C 0.08 2.28 4.45 86.30 0.38 2.66 16 11 C -0.05 -1.70 0.60 -52.18 -0.03 -1.73 16 12 C -0.11 -4.05 8.06 71.99 0.58 -3.47 16 13 C -0.12 -4.23 7.89 71.98 0.57 -3.66 16 14 C 0.00 -0.15 3.11 29.84 0.09 -0.06 16 15 C -0.50 -27.91 8.20 25.60 0.21 -27.70 16 16 H 0.04 2.71 5.92 -2.91 -0.02 2.70 16 17 C 0.00 0.00 5.47 84.65 0.46 0.46 16 18 N -0.96 -60.11 13.96 21.45 0.30 -59.81 16 19 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 23 C 0.00 0.05 7.29 22.46 0.16 0.21 16 24 F -0.13 -2.58 16.79 44.97 0.76 -1.83 16 25 C 0.12 2.02 11.16 84.67 0.95 2.96 16 26 N -0.53 -10.82 9.21 -308.78 -2.84 -13.67 16 27 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.16 3.29 6.98 -2.91 -0.02 3.27 16 31 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 34 H 0.35 7.37 6.11 -89.70 -0.55 6.82 16 35 H 0.04 0.98 7.44 -2.38 -0.02 0.96 16 36 H 0.07 1.90 8.05 -2.39 -0.02 1.89 16 37 H 0.07 2.16 7.60 -2.39 -0.02 2.14 16 38 H 0.03 1.16 6.62 -2.39 -0.02 1.14 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.03 1.44 6.62 -2.39 -0.02 1.42 16 42 H 0.07 1.84 6.57 -2.39 -0.02 1.83 16 43 H 0.02 0.68 7.20 -2.39 -0.02 0.66 16 44 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 45 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -66.20 368.38 3.43 -62.77 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.38 Total: 15.96 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 6.07 Total: -24.52 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.70 Total: -91.10 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.95 Total: -7.63 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.76 Total: -1.83 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -66.20 3.43 -62.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348219644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.051 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds