Wall clock time and date at job start Fri Apr 10 2020 22:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99555 * 2 1 4 4 H 1.48502 * 109.47316 * 266.19654 * 3 2 1 5 5 H 1.48510 * 109.46799 * 146.20160 * 3 2 1 6 6 H 1.48501 * 109.47481 * 26.20098 * 3 2 1 7 7 C 1.37871 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99587 * 355.75648 * 7 2 1 9 9 C 1.50693 * 120.00305 * 175.74986 * 7 2 1 10 10 C 1.52997 * 115.55267 * 298.95272 * 9 7 2 11 11 N 1.46494 * 109.47343 * 294.70498 * 10 9 7 12 12 C 1.34774 * 120.00563 * 184.80889 * 11 10 9 13 13 O 1.21590 * 119.99726 * 4.99575 * 12 11 10 14 14 N 1.34776 * 120.00641 * 185.00376 * 12 11 10 15 15 C 1.46494 * 120.00360 * 185.00353 * 14 12 11 16 16 C 1.53003 * 109.47039 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47003 * 55.00019 * 16 15 14 18 18 C 1.53001 * 109.47395 * 294.99463 * 16 15 14 19 19 C 1.52997 * 109.46846 * 300.00260 * 18 16 15 20 20 C 1.52992 * 109.47334 * 299.99673 * 19 18 16 21 21 C 1.53001 * 109.47242 * 60.00224 * 20 19 18 22 22 H 1.09000 * 109.47114 * 60.00469 * 21 20 19 23 23 C 1.53001 * 109.47124 * 180.02562 * 21 20 19 24 24 O 1.42899 * 109.47160 * 295.00015 * 23 21 20 25 25 C 1.52997 * 109.46773 * 300.00119 * 21 20 19 26 26 C 1.53002 * 117.49868 * 153.24533 * 9 7 2 27 27 C 1.53001 * 117.49982 * 84.62216 * 9 7 2 28 28 H 0.97003 * 120.00016 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47196 * 54.70734 * 10 9 7 30 30 H 1.09006 * 109.47412 * 174.70500 * 10 9 7 31 31 H 0.97009 * 120.00043 * 4.80695 * 11 10 9 32 32 H 0.97007 * 119.99635 * 4.99269 * 14 12 11 33 33 H 1.09001 * 109.46996 * 299.99337 * 15 14 12 34 34 H 1.08994 * 109.47618 * 59.99805 * 15 14 12 35 35 H 1.08997 * 109.46545 * 60.00028 * 18 16 15 36 36 H 1.08993 * 109.47355 * 180.02562 * 18 16 15 37 37 H 1.09007 * 109.47086 * 179.97438 * 19 18 16 38 38 H 1.09007 * 109.47352 * 59.99856 * 19 18 16 39 39 H 1.09000 * 109.47396 * 300.00206 * 20 19 18 40 40 H 1.09007 * 109.47087 * 180.02562 * 20 19 18 41 41 H 1.08995 * 109.47217 * 54.99732 * 23 21 20 42 42 H 1.08999 * 109.46989 * 175.00133 * 23 21 20 43 43 H 0.96698 * 114.00045 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.47047 * 299.99518 * 25 21 20 45 45 H 1.09010 * 109.46595 * 180.02562 * 25 21 20 46 46 H 1.09000 * 117.49761 * 359.97438 * 26 9 7 47 47 H 1.08996 * 117.49874 * 145.02685 * 26 9 7 48 48 H 1.08993 * 117.50228 * 214.98396 * 27 9 7 49 49 H 1.09004 * 117.49608 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5770 2.0002 -1.3970 5 1 3.5042 1.4648 0.7789 6 1 1.4086 2.6746 0.6182 7 6 2.0046 -1.1939 0.0005 8 1 1.4668 -2.1280 0.0702 9 6 3.5084 -1.1958 -0.0962 10 6 4.0887 -0.5741 -1.3681 11 7 3.7024 -1.3827 -2.5270 12 6 4.1819 -1.0804 -3.7497 13 8 5.0050 -0.1947 -3.8780 14 7 3.7491 -1.7597 -4.8303 15 6 4.3489 -1.5074 -6.1428 16 6 3.6822 -2.4031 -7.1889 17 1 2.6037 -2.2468 -7.1666 18 6 3.9919 -3.8687 -6.8774 19 6 5.5057 -4.0878 -6.9088 20 6 6.0432 -3.7370 -8.2975 21 6 5.7336 -2.2714 -8.6090 22 1 6.2086 -1.6333 -7.8638 23 6 6.2705 -1.9207 -9.9982 24 8 7.6965 -2.0134 -9.9950 25 6 4.2197 -2.0523 -8.5777 26 6 4.2541 -2.3847 0.5132 27 6 4.3000 -1.0188 1.2011 28 1 -0.4850 0.8401 -0.0004 29 1 3.7026 0.4383 -1.4865 30 1 5.1757 -0.5420 -1.2936 31 1 3.1014 -2.1359 -2.4143 32 1 3.0405 -2.4158 -4.7389 33 1 4.2036 -0.4616 -6.4137 34 1 5.4156 -1.7277 -6.1033 35 1 3.6089 -4.1185 -5.8880 36 1 3.5173 -4.5067 -7.6229 37 1 5.7264 -5.1319 -6.6864 38 1 5.9807 -3.4497 -6.1635 39 1 5.5683 -4.3750 -9.0428 40 1 7.1218 -3.8935 -8.3199 41 1 5.8629 -2.6165 -10.7315 42 1 5.9731 -0.9045 -10.2568 43 1 8.1062 -1.8036 -10.8454 44 1 3.7448 -2.6903 -9.3230 45 1 3.9991 -1.0081 -8.8001 46 1 3.6569 -3.1654 0.9844 47 1 5.1582 -2.7243 0.0080 48 1 5.2342 -0.4599 1.1485 49 1 3.7330 -0.9007 2.1245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355841774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:55 Heat of formation + Delta-G solvation = -81.251757 kcal Electronic energy + Delta-G solvation = -26486.480303 eV Core-core repulsion = 22834.214515 eV Total energy + Delta-G solvation = -3652.265788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.11279 -39.04692 -37.16509 -36.77479 -34.22121 -33.29546 -32.18316 -31.69126 -31.11477 -27.15266 -25.97294 -25.63871 -24.45348 -22.58335 -21.59284 -21.31174 -20.30208 -19.27303 -19.10964 -17.78854 -17.40623 -16.51225 -16.05400 -15.72173 -15.36703 -15.22516 -14.93178 -14.45362 -14.21490 -14.16041 -13.93596 -13.32800 -13.14370 -13.10636 -12.90844 -12.78121 -12.42074 -12.29082 -12.11818 -12.01275 -11.65539 -11.35517 -11.22015 -11.05067 -10.63467 -10.52770 -10.50024 -10.37975 -10.22616 -10.21828 -10.10392 -9.78604 -9.49940 -9.15900 -8.84296 -8.72906 -8.50995 -8.05511 -6.17305 -4.19550 3.19439 3.32011 3.40186 3.45739 3.75699 3.87393 4.39428 4.40372 4.47453 4.57196 4.69385 4.76176 4.97263 5.00620 5.06391 5.17765 5.21495 5.22768 5.25981 5.31282 5.35419 5.46259 5.46993 5.70803 5.72110 5.76304 5.83714 5.93870 5.99974 6.00377 6.03138 6.12504 6.16922 6.19942 6.29842 6.32467 6.47249 6.53615 6.73305 6.81664 6.96293 7.10296 7.25442 7.31943 7.49612 7.68517 8.41835 8.61953 8.84102 9.16055 9.46529 10.93706 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.002912 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.501437 B = 9613.615490 C = 9765.299560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.253 1.253 6 H -0.294 1.294 7 C -0.488 4.488 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.169 3.831 11 N -0.719 5.719 12 C 0.699 3.301 13 O -0.606 6.606 14 N -0.750 5.750 15 C 0.141 3.859 16 C -0.098 4.098 17 H 0.080 0.920 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.107 4.107 21 C -0.093 4.093 22 H 0.083 0.917 23 C 0.080 3.920 24 O -0.572 6.572 25 C -0.103 4.103 26 C -0.179 4.179 27 C -0.188 4.188 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.402 0.598 32 H 0.395 0.605 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.377 0.623 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -7.614 -19.557 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.177 1.177 6 H -0.221 1.221 7 C -0.525 4.525 8 H 0.096 0.904 9 C -0.019 4.019 10 C 0.045 3.955 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.486 6.486 14 N -0.407 5.407 15 C 0.017 3.983 16 C -0.117 4.117 17 H 0.098 0.902 18 C -0.152 4.152 19 C -0.162 4.162 20 C -0.145 4.145 21 C -0.112 4.112 22 H 0.102 0.898 23 C 0.002 3.998 24 O -0.377 6.377 25 C -0.141 4.141 26 C -0.217 4.217 27 C -0.226 4.226 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.237 0.763 32 H 0.229 0.771 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.223 0.777 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.628 -6.834 -19.018 22.386 hybrid contribution -0.271 0.523 -0.497 0.771 sum 9.357 -6.311 -19.516 22.544 Atomic orbital electron populations 1.69885 1.06357 1.27300 1.49492 1.24908 0.94526 0.99082 0.93528 0.87026 0.80838 0.83380 0.78802 1.20092 1.17722 1.22085 1.20244 0.86366 0.94511 1.51410 0.90433 1.19611 0.94887 0.98191 0.89166 1.20976 0.96893 0.93781 0.83881 1.44976 1.51761 1.35104 1.05408 1.16018 0.81534 0.81832 0.80713 1.90863 1.37601 1.34478 1.85674 1.45081 1.42731 1.45855 1.07070 1.21275 0.97524 0.98746 0.80755 1.21352 1.00520 0.95467 0.94354 0.90161 1.21564 0.96476 0.95363 1.01773 1.21597 0.95728 1.01392 0.97455 1.21495 1.01232 0.94954 0.96801 1.21235 0.95469 0.98116 0.96360 0.89824 1.22246 0.80873 0.99241 0.97427 1.86504 1.19916 1.93094 1.38203 1.21460 0.94376 1.01841 0.96406 1.22758 1.01478 0.91843 1.05581 1.23038 1.01284 0.99483 0.98794 0.92459 0.92730 0.93385 0.76338 0.77136 0.92088 0.91342 0.91624 0.91831 0.92038 0.91341 0.92418 0.91433 0.93843 0.93702 0.77678 0.91326 0.91415 0.89698 0.90878 0.91113 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 3 Si 0.87 21.75 24.86 -169.99 -4.23 17.52 16 4 H -0.27 -7.02 6.66 56.52 0.38 -6.64 16 5 H -0.25 -6.01 6.22 56.52 0.35 -5.65 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.49 -12.87 9.19 -34.45 -0.32 -13.18 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 9 C -0.02 -0.39 0.86 -155.66 -0.13 -0.52 16 10 C 0.17 3.75 5.09 -4.05 -0.02 3.73 16 11 N -0.72 -14.26 5.48 -65.23 -0.36 -14.62 16 12 C 0.70 13.63 8.55 -86.92 -0.74 12.89 16 13 O -0.61 -14.10 16.33 5.29 0.09 -14.02 16 14 N -0.75 -10.92 5.29 -65.23 -0.34 -11.27 16 15 C 0.14 1.78 4.36 -4.04 -0.02 1.77 16 16 C -0.10 -0.89 2.70 -90.62 -0.24 -1.13 16 17 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.11 -0.98 5.32 -26.73 -0.14 -1.12 16 19 C -0.12 -1.15 5.65 -26.74 -0.15 -1.30 16 20 C -0.11 -0.94 5.10 -26.73 -0.14 -1.08 16 21 C -0.09 -0.82 2.16 -90.62 -0.20 -1.02 16 22 H 0.08 0.91 6.54 -51.93 -0.34 0.57 16 23 C 0.08 0.60 6.43 37.16 0.24 0.84 16 24 O -0.57 -4.91 13.20 -35.23 -0.46 -5.37 16 25 C -0.10 -0.80 4.73 -26.73 -0.13 -0.93 16 26 C -0.18 -3.49 9.96 -26.73 -0.27 -3.76 16 27 C -0.19 -3.89 8.66 -26.73 -0.23 -4.12 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.05 1.35 4.18 -51.93 -0.22 1.13 16 30 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 31 H 0.40 7.36 8.36 -40.82 -0.34 7.02 16 32 H 0.39 4.81 7.68 -40.82 -0.31 4.49 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.93 4.82 -51.93 -0.25 0.68 16 35 H 0.07 0.58 7.18 -51.93 -0.37 0.21 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.76 6.32 -51.92 -0.33 0.43 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.67 7.82 -51.92 -0.41 0.26 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.38 1.51 9.12 45.56 0.42 1.92 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 46 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -33.02 375.63 -9.16 -42.18 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -7.70 Total: 12.22 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.58 Total: -6.72 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.07 Total: -51.46 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.38 Total: -19.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.23 Total: 17.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.02 -9.16 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355841774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.073 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds