Wall clock time and date at job start Fri Apr 10 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99555 * 2 1 4 4 H 1.48502 * 109.47316 * 266.19654 * 3 2 1 5 5 H 1.48510 * 109.46799 * 146.20160 * 3 2 1 6 6 H 1.48501 * 109.47481 * 26.20098 * 3 2 1 7 7 C 1.37871 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99587 * 355.75648 * 7 2 1 9 9 C 1.50693 * 120.00305 * 175.74986 * 7 2 1 10 10 C 1.52997 * 115.55267 * 298.95272 * 9 7 2 11 11 N 1.46494 * 109.47343 * 294.70498 * 10 9 7 12 12 C 1.34774 * 120.00563 * 184.80889 * 11 10 9 13 13 O 1.21590 * 119.99726 * 4.99575 * 12 11 10 14 14 N 1.34776 * 120.00641 * 185.00376 * 12 11 10 15 15 C 1.46494 * 120.00360 * 185.00353 * 14 12 11 16 16 C 1.53003 * 109.47039 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47003 * 55.00019 * 16 15 14 18 18 C 1.53001 * 109.47395 * 294.99463 * 16 15 14 19 19 C 1.52997 * 109.46846 * 300.00260 * 18 16 15 20 20 C 1.52992 * 109.47334 * 299.99673 * 19 18 16 21 21 C 1.53001 * 109.47242 * 60.00224 * 20 19 18 22 22 H 1.09000 * 109.47114 * 60.00469 * 21 20 19 23 23 C 1.53001 * 109.47124 * 180.02562 * 21 20 19 24 24 O 1.42899 * 109.47160 * 295.00015 * 23 21 20 25 25 C 1.52997 * 109.46773 * 300.00119 * 21 20 19 26 26 C 1.53002 * 117.49868 * 153.24533 * 9 7 2 27 27 C 1.53001 * 117.49982 * 84.62216 * 9 7 2 28 28 H 0.97003 * 120.00016 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47196 * 54.70734 * 10 9 7 30 30 H 1.09006 * 109.47412 * 174.70500 * 10 9 7 31 31 H 0.97009 * 120.00043 * 4.80695 * 11 10 9 32 32 H 0.97007 * 119.99635 * 4.99269 * 14 12 11 33 33 H 1.09001 * 109.46996 * 299.99337 * 15 14 12 34 34 H 1.08994 * 109.47618 * 59.99805 * 15 14 12 35 35 H 1.08997 * 109.46545 * 60.00028 * 18 16 15 36 36 H 1.08993 * 109.47355 * 180.02562 * 18 16 15 37 37 H 1.09007 * 109.47086 * 179.97438 * 19 18 16 38 38 H 1.09007 * 109.47352 * 59.99856 * 19 18 16 39 39 H 1.09000 * 109.47396 * 300.00206 * 20 19 18 40 40 H 1.09007 * 109.47087 * 180.02562 * 20 19 18 41 41 H 1.08995 * 109.47217 * 54.99732 * 23 21 20 42 42 H 1.08999 * 109.46989 * 175.00133 * 23 21 20 43 43 H 0.96698 * 114.00045 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.47047 * 299.99518 * 25 21 20 45 45 H 1.09010 * 109.46595 * 180.02562 * 25 21 20 46 46 H 1.09000 * 117.49761 * 359.97438 * 26 9 7 47 47 H 1.08996 * 117.49874 * 145.02685 * 26 9 7 48 48 H 1.08993 * 117.50228 * 214.98396 * 27 9 7 49 49 H 1.09004 * 117.49608 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5770 2.0002 -1.3970 5 1 3.5042 1.4648 0.7789 6 1 1.4086 2.6746 0.6182 7 6 2.0046 -1.1939 0.0005 8 1 1.4668 -2.1280 0.0702 9 6 3.5084 -1.1958 -0.0962 10 6 4.0887 -0.5741 -1.3681 11 7 3.7024 -1.3827 -2.5270 12 6 4.1819 -1.0804 -3.7497 13 8 5.0050 -0.1947 -3.8780 14 7 3.7491 -1.7597 -4.8303 15 6 4.3489 -1.5074 -6.1428 16 6 3.6822 -2.4031 -7.1889 17 1 2.6037 -2.2468 -7.1666 18 6 3.9919 -3.8687 -6.8774 19 6 5.5057 -4.0878 -6.9088 20 6 6.0432 -3.7370 -8.2975 21 6 5.7336 -2.2714 -8.6090 22 1 6.2086 -1.6333 -7.8638 23 6 6.2705 -1.9207 -9.9982 24 8 7.6965 -2.0134 -9.9950 25 6 4.2197 -2.0523 -8.5777 26 6 4.2541 -2.3847 0.5132 27 6 4.3000 -1.0188 1.2011 28 1 -0.4850 0.8401 -0.0004 29 1 3.7026 0.4383 -1.4865 30 1 5.1757 -0.5420 -1.2936 31 1 3.1014 -2.1359 -2.4143 32 1 3.0405 -2.4158 -4.7389 33 1 4.2036 -0.4616 -6.4137 34 1 5.4156 -1.7277 -6.1033 35 1 3.6089 -4.1185 -5.8880 36 1 3.5173 -4.5067 -7.6229 37 1 5.7264 -5.1319 -6.6864 38 1 5.9807 -3.4497 -6.1635 39 1 5.5683 -4.3750 -9.0428 40 1 7.1218 -3.8935 -8.3199 41 1 5.8629 -2.6165 -10.7315 42 1 5.9731 -0.9045 -10.2568 43 1 8.1062 -1.8036 -10.8454 44 1 3.7448 -2.6903 -9.3230 45 1 3.9991 -1.0081 -8.8001 46 1 3.6569 -3.1654 0.9844 47 1 5.1582 -2.7243 0.0080 48 1 5.2342 -0.4599 1.1485 49 1 3.7330 -0.9007 2.1245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355841774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:54 Heat of formation + Delta-G solvation = -106.202366 kcal Electronic energy + Delta-G solvation = -26487.562243 eV Core-core repulsion = 22834.214515 eV Total energy + Delta-G solvation = -3653.347728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26209 -40.20507 -38.76385 -37.54690 -35.42314 -34.93082 -34.28059 -32.40478 -31.99568 -28.74494 -27.43567 -26.54904 -25.85223 -23.32841 -23.21396 -21.99776 -21.80233 -21.10567 -20.00086 -19.21468 -18.36125 -18.02556 -17.18751 -17.13330 -16.81995 -16.24605 -16.03169 -15.60955 -15.51700 -15.39553 -15.03734 -14.89215 -14.72003 -14.24947 -14.12291 -13.95396 -13.75694 -13.48975 -13.09598 -13.02344 -12.84776 -12.58535 -12.40983 -12.19101 -12.14431 -12.07550 -11.90219 -11.55901 -11.34622 -11.20696 -11.02870 -11.00508 -10.95226 -10.73050 -10.72183 -10.39484 -10.23216 -9.60089 -8.32240 -6.34901 1.31263 1.36996 1.45734 1.80986 2.19293 2.32915 2.95027 3.26861 3.33485 3.53750 3.69804 3.79237 3.89321 4.01397 4.03340 4.26068 4.31066 4.38586 4.47136 4.47448 4.50968 4.53292 4.57724 4.61310 4.68052 4.72014 4.76093 4.81517 4.88968 4.91991 5.00812 5.06905 5.10258 5.19431 5.25832 5.29310 5.29593 5.41181 5.47909 5.50988 5.56498 5.58487 5.65343 5.69102 6.10926 6.29581 6.71213 6.94613 7.18142 7.33239 7.63174 8.82036 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.002912 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.501437 B = 9613.615490 C = 9765.299560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.037 3.963 3 Si 0.919 3.081 4 H -0.288 1.288 5 H -0.232 1.232 6 H -0.297 1.297 7 C -0.474 4.474 8 H 0.048 0.952 9 C -0.042 4.042 10 C 0.176 3.824 11 N -0.718 5.718 12 C 0.695 3.305 13 O -0.646 6.646 14 N -0.732 5.732 15 C 0.141 3.859 16 C -0.090 4.090 17 H 0.091 0.909 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.102 4.102 21 C -0.095 4.095 22 H 0.053 0.947 23 C 0.079 3.921 24 O -0.596 6.596 25 C -0.098 4.098 26 C -0.153 4.153 27 C -0.184 4.184 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.409 0.591 32 H 0.409 0.591 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.395 0.605 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -8.816 -20.849 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.162 4.162 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.155 1.155 6 H -0.224 1.224 7 C -0.511 4.511 8 H 0.067 0.933 9 C -0.043 4.043 10 C 0.051 3.949 11 N -0.372 5.372 12 C 0.394 3.606 13 O -0.529 6.529 14 N -0.388 5.388 15 C 0.017 3.983 16 C -0.108 4.108 17 H 0.110 0.890 18 C -0.148 4.148 19 C -0.161 4.161 20 C -0.139 4.139 21 C -0.114 4.114 22 H 0.072 0.928 23 C 0.002 3.998 24 O -0.405 6.405 25 C -0.136 4.136 26 C -0.189 4.189 27 C -0.222 4.222 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.245 0.755 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.244 0.756 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.451 -8.079 -20.332 24.246 hybrid contribution -0.483 0.810 -0.132 0.952 sum 9.968 -7.269 -20.464 23.896 Atomic orbital electron populations 1.69991 1.07779 1.27810 1.52183 1.25507 0.94929 1.01812 0.93988 0.86261 0.80598 0.80335 0.78161 1.21491 1.15455 1.22415 1.20376 0.88562 0.92946 1.49220 0.93336 1.19444 0.92806 1.01729 0.90351 1.20765 0.97080 0.92708 0.84349 1.44887 1.51977 1.35088 1.05255 1.16223 0.81184 0.81766 0.81385 1.90830 1.39458 1.36356 1.86272 1.44997 1.42351 1.44929 1.06555 1.21410 0.97398 0.98875 0.80595 1.21334 1.00723 0.95000 0.93774 0.89049 1.21563 0.95840 0.95098 1.02337 1.21570 0.96256 1.01138 0.97118 1.21439 1.00374 0.95258 0.96870 1.21226 0.96118 0.97523 0.96537 0.92809 1.22277 0.80525 1.00148 0.96860 1.86458 1.20655 1.93285 1.40072 1.21450 0.93595 1.02587 0.95928 1.22802 1.01425 0.91023 1.03700 1.23089 1.01386 1.00600 0.97151 0.92623 0.95389 0.92603 0.75551 0.75499 0.93661 0.92448 0.91914 0.89713 0.91455 0.93889 0.90702 0.92990 0.91900 0.93080 0.75578 0.88929 0.91194 0.89406 0.88420 0.89091 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 2 C 0.04 2.05 5.47 84.65 0.46 2.51 16 3 Si 0.92 45.14 24.86 68.60 1.71 46.84 16 4 H -0.29 -14.66 6.66 99.48 0.66 -14.00 16 5 H -0.23 -10.43 6.22 99.48 0.62 -9.81 16 6 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.47 -24.95 9.19 25.60 0.24 -24.72 16 8 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 9 C -0.04 -1.82 0.86 -52.93 -0.05 -1.87 16 10 C 0.18 7.63 5.09 86.38 0.44 8.07 16 11 N -0.72 -28.04 5.48 -478.54 -2.62 -30.67 16 12 C 0.69 26.97 8.55 179.06 1.53 28.50 16 13 O -0.65 -30.34 16.33 -4.00 -0.07 -30.41 16 14 N -0.73 -20.90 5.29 -478.55 -2.53 -23.43 16 15 C 0.14 3.53 4.36 86.38 0.38 3.90 16 16 C -0.09 -1.46 2.70 -10.79 -0.03 -1.48 16 17 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 18 C -0.11 -1.64 5.32 30.59 0.16 -1.48 16 19 C -0.12 -2.14 5.65 30.59 0.17 -1.97 16 20 C -0.10 -1.65 5.10 30.59 0.16 -1.50 16 21 C -0.10 -1.58 2.16 -10.79 -0.02 -1.60 16 22 H 0.05 1.20 6.54 -2.39 -0.02 1.19 16 23 C 0.08 1.06 6.43 71.98 0.46 1.53 16 24 O -0.60 -9.65 13.20 -148.98 -1.97 -11.61 16 25 C -0.10 -1.31 4.73 30.59 0.14 -1.16 16 26 C -0.15 -5.50 9.96 30.60 0.30 -5.19 16 27 C -0.18 -7.13 8.66 30.60 0.26 -6.86 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.03 1.37 4.18 -2.38 -0.01 1.36 16 30 H 0.06 2.33 8.05 -2.38 -0.02 2.31 16 31 H 0.41 14.65 8.36 -92.70 -0.78 13.88 16 32 H 0.41 9.44 7.68 -92.70 -0.71 8.72 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.60 4.82 -2.39 -0.01 1.59 16 35 H 0.06 0.97 7.18 -2.39 -0.02 0.96 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.04 0.96 6.32 -2.38 -0.02 0.95 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 1.00 7.82 -2.38 -0.02 0.98 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.39 2.67 9.12 -74.06 -0.68 1.99 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 49 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -72.26 375.63 -1.89 -74.16 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -1.33 Total: 34.59 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.62 Total: -3.33 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.86 Total: -110.24 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -2.03 Total: -42.02 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.71 Total: 46.84 kcal Total: -72.26 -1.89 -74.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355841774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.045 kcal (2) G-P(sol) polarization free energy of solvation -72.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds