Wall clock time and date at job start Fri Apr 10 2020 22:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99728 * 2 1 4 4 H 1.48506 * 109.46875 * 269.99903 * 3 2 1 5 5 H 1.48501 * 109.47388 * 29.99943 * 3 2 1 6 6 H 1.48499 * 109.46843 * 150.00316 * 3 2 1 7 7 C 1.37874 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99806 * 173.55047 * 7 2 1 9 9 C 1.50699 * 120.00227 * 353.55347 * 7 2 1 10 10 C 1.53003 * 115.55080 * 85.40480 * 9 7 2 11 11 N 1.46505 * 109.46984 * 65.13986 * 10 9 7 12 12 C 1.34776 * 119.99433 * 178.29126 * 11 10 9 13 13 O 1.21585 * 120.00525 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99516 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00115 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47317 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.47208 * 55.00208 * 16 15 14 18 18 C 1.52994 * 109.47096 * 295.00088 * 16 15 14 19 19 C 1.52998 * 109.47434 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46923 * 59.99653 * 19 18 16 21 21 C 1.53002 * 109.47416 * 300.00133 * 20 19 18 22 22 H 1.08994 * 109.47102 * 300.00280 * 21 20 19 23 23 C 1.52998 * 109.47183 * 179.97438 * 21 20 19 24 24 O 1.42902 * 109.46877 * 65.00297 * 23 21 20 25 25 C 1.53002 * 109.46846 * 60.00098 * 21 20 19 26 26 C 1.52995 * 117.49955 * 231.07417 * 9 7 2 27 27 C 1.52999 * 117.50022 * 299.73264 * 9 7 2 28 28 H 0.97003 * 120.00407 * 5.06644 * 1 2 3 29 29 H 1.09004 * 109.46735 * 305.14547 * 10 9 7 30 30 H 1.09000 * 109.47406 * 185.14281 * 10 9 7 31 31 H 0.96997 * 119.99700 * 358.28870 * 11 10 9 32 32 H 0.97005 * 120.00243 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.47255 * 59.99961 * 15 14 12 34 34 H 1.09000 * 109.47353 * 300.00149 * 15 14 12 35 35 H 1.08997 * 109.47214 * 59.99720 * 18 16 15 36 36 H 1.09008 * 109.46966 * 299.99816 * 18 16 15 37 37 H 1.08995 * 109.47437 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.46981 * 300.00187 * 19 18 16 39 39 H 1.09000 * 109.46963 * 60.01002 * 20 19 18 40 40 H 1.09008 * 109.47175 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47095 * 184.99619 * 23 21 20 42 42 H 1.08997 * 109.47537 * 305.00649 * 23 21 20 43 43 H 0.96702 * 113.99892 * 179.97438 * 24 23 21 44 44 H 1.09001 * 109.47208 * 59.99809 * 25 21 20 45 45 H 1.08995 * 109.47099 * 179.97438 * 25 21 20 46 46 H 1.08999 * 117.50036 * 215.00499 * 26 9 7 47 47 H 1.09003 * 117.49863 * 0.02562 * 26 9 7 48 48 H 1.09005 * 117.49812 * 359.97438 * 27 9 7 49 49 H 1.09000 * 117.49958 * 144.97163 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1970 -0.1045 9 6 1.2582 -2.4950 0.1476 10 6 0.7021 -3.0870 -1.1490 11 7 1.8112 -3.4601 -2.0305 12 6 1.5599 -4.0372 -3.2222 13 8 0.4129 -4.2487 -3.5655 14 7 2.5802 -4.3809 -4.0330 15 6 2.3072 -5.0088 -5.3281 16 6 3.6283 -5.2945 -6.0450 17 1 4.2704 -5.8930 -5.3987 18 6 4.3258 -3.9734 -6.3747 19 6 5.6466 -4.2590 -7.0922 20 6 5.3684 -5.0258 -8.3866 21 6 4.6709 -6.3471 -8.0569 22 1 5.3131 -6.9456 -7.4109 23 6 4.3921 -7.1136 -9.3514 24 8 5.6301 -7.4819 -9.9628 25 6 3.3501 -6.0613 -7.3395 26 6 1.7471 -3.4727 1.2180 27 6 0.4419 -2.7005 1.4252 28 1 -0.4851 0.8368 -0.0742 29 1 0.0755 -2.3470 -1.6468 30 1 0.1075 -3.9711 -0.9191 31 1 2.7263 -3.2916 -1.7565 32 1 3.4954 -4.2125 -3.7590 33 1 1.7017 -4.3373 -5.9370 34 1 1.7683 -5.9433 -5.1725 35 1 4.5236 -3.4269 -5.4526 36 1 3.6837 -3.3749 -7.0211 37 1 6.1438 -3.3178 -7.3267 38 1 6.2889 -4.8577 -6.4462 39 1 4.7262 -4.4272 -9.0326 40 1 6.3094 -5.2298 -8.8976 41 1 3.8173 -8.0116 -9.1253 42 1 3.8243 -6.4807 -10.0333 43 1 5.5295 -7.9725 -10.7901 44 1 2.7078 -5.4627 -7.9854 45 1 2.8529 -7.0025 -7.1050 46 1 1.6727 -4.5378 0.9984 47 1 2.6084 -3.1749 1.8161 48 1 0.4450 -1.8950 2.1596 49 1 -0.4916 -3.2572 1.3419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355841776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:57 Heat of formation + Delta-G solvation = -90.880934 kcal Electronic energy + Delta-G solvation = -25832.969324 eV Core-core repulsion = 22180.285984 eV Total energy + Delta-G solvation = -3652.683341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82048 -38.97894 -37.01921 -36.62647 -34.49609 -33.19700 -31.96122 -31.72885 -31.18375 -26.68879 -25.89677 -25.51428 -24.43765 -22.33406 -21.20752 -20.72995 -20.32661 -19.94682 -19.34521 -17.72641 -17.57089 -16.31246 -15.62021 -15.58689 -15.36366 -15.11435 -14.67336 -14.47099 -14.28773 -14.08851 -13.91974 -13.58515 -13.22918 -12.99496 -12.80323 -12.61482 -12.22010 -12.13051 -11.84010 -11.61647 -11.53601 -11.28248 -11.15633 -10.99427 -10.91599 -10.66923 -10.51979 -10.44718 -10.39279 -10.25214 -10.13900 -9.70884 -9.48910 -8.94891 -8.77237 -8.48007 -8.23221 -7.92481 -6.06333 -4.14824 3.25529 3.26284 3.33996 3.35658 3.83384 3.86347 4.35987 4.36250 4.43841 4.57792 4.75409 4.85744 4.97598 5.01664 5.07024 5.18091 5.21844 5.26444 5.30535 5.35980 5.39558 5.43547 5.47941 5.69102 5.74924 5.84707 5.93395 5.99069 6.01427 6.05829 6.10633 6.11374 6.28147 6.36688 6.49703 6.62719 6.71535 6.84362 6.88875 7.10871 7.24454 7.37356 7.44512 7.49898 7.64341 7.82629 8.35902 8.71432 8.85830 9.26215 9.51675 11.01496 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.002544 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.783436 B =11001.486689 C =11794.500650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.605 6.605 14 N -0.753 5.753 15 C 0.146 3.854 16 C -0.095 4.095 17 H 0.077 0.923 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.085 4.085 22 H 0.077 0.923 23 C 0.079 3.921 24 O -0.574 6.574 25 C -0.105 4.105 26 C -0.211 4.211 27 C -0.148 4.148 28 H 0.261 0.739 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.395 0.605 32 H 0.393 0.607 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.377 0.623 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.305 -12.519 -16.561 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.058 3.942 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.485 6.485 14 N -0.411 5.411 15 C 0.022 3.978 16 C -0.114 4.114 17 H 0.095 0.905 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.104 4.104 22 H 0.096 0.904 23 C 0.001 3.999 24 O -0.379 6.379 25 C -0.143 4.143 26 C -0.248 4.248 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.228 0.772 32 H 0.226 0.774 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.224 0.776 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.267 -12.252 -16.253 22.364 hybrid contribution 0.920 0.860 -0.238 1.282 sum 10.187 -11.392 -16.491 22.484 Atomic orbital electron populations 1.69979 1.05879 1.26895 1.48249 1.24988 0.94801 0.98930 0.94352 0.86637 0.79911 0.83603 0.78120 1.20693 1.21176 1.19857 1.20321 0.92769 0.88633 1.51975 0.92273 1.19043 0.98573 0.93881 0.85777 1.20840 0.86667 0.96612 0.90040 1.45138 1.11238 1.63690 1.17248 1.16049 0.84597 0.78868 0.80794 1.90865 1.19939 1.61982 1.75690 1.45098 1.08370 1.67923 1.19670 1.21099 0.95837 0.97665 0.83235 1.21357 0.96467 0.97155 0.96445 0.90466 1.21628 0.96439 0.96593 1.00761 1.21545 0.97336 1.00137 0.96712 1.21527 1.00712 0.95113 0.97408 1.21126 0.97367 0.96679 0.95218 0.90443 1.22258 0.85556 0.97652 0.94443 1.86479 1.31145 1.78074 1.42209 1.21469 0.96454 1.00430 0.95969 1.23015 0.98623 0.95684 1.07463 1.22491 0.92298 1.01076 1.02744 0.92861 0.91256 0.94775 0.77153 0.77377 0.91949 0.92047 0.91543 0.91632 0.91916 0.91997 0.92214 0.91476 0.93655 0.93632 0.77595 0.91315 0.91410 0.91657 0.90422 0.89834 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 12.91 55.43 0.72 -23.72 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.50 -12.87 8.63 -34.44 -0.30 -13.17 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 10 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 11 N -0.72 -14.31 5.48 -65.22 -0.36 -14.66 16 12 C 0.70 13.57 8.57 -86.92 -0.74 12.83 16 13 O -0.61 -14.24 16.34 5.29 0.09 -14.15 16 14 N -0.75 -10.73 5.29 -65.23 -0.34 -11.07 16 15 C 0.15 1.79 5.06 -4.04 -0.02 1.77 16 16 C -0.10 -0.85 2.23 -90.62 -0.20 -1.05 16 17 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.12 -1.05 5.08 -26.73 -0.14 -1.18 16 19 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 20 C -0.11 -0.89 5.10 -26.73 -0.14 -1.02 16 21 C -0.09 -0.66 2.43 -90.62 -0.22 -0.88 16 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 23 C 0.08 0.53 6.43 37.16 0.24 0.77 16 24 O -0.57 -4.29 13.19 -35.23 -0.46 -4.76 16 25 C -0.11 -0.81 4.48 -26.73 -0.12 -0.93 16 26 C -0.21 -4.40 9.96 -26.70 -0.27 -4.66 16 27 C -0.15 -3.40 9.42 -26.70 -0.25 -3.65 16 28 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 29 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 30 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.40 7.09 8.38 -40.82 -0.34 6.74 16 32 H 0.39 4.59 7.67 -40.82 -0.31 4.28 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.63 7.18 -51.93 -0.37 0.26 16 36 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.59 7.82 -51.92 -0.41 0.18 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.38 1.16 9.12 45.56 0.42 1.58 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 48 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 49 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -31.76 392.47 -10.29 -42.05 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.17 Total: 10.60 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.65 Total: -5.80 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.01 Total: -49.46 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.38 Total: -18.90 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.76 -10.29 -42.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355841776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.830 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds