Wall clock time and date at job start Fri Apr 10 2020 22:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99728 * 2 1 4 4 H 1.48506 * 109.46875 * 269.99903 * 3 2 1 5 5 H 1.48501 * 109.47388 * 29.99943 * 3 2 1 6 6 H 1.48499 * 109.46843 * 150.00316 * 3 2 1 7 7 C 1.37874 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99806 * 173.55047 * 7 2 1 9 9 C 1.50699 * 120.00227 * 353.55347 * 7 2 1 10 10 C 1.53003 * 115.55080 * 85.40480 * 9 7 2 11 11 N 1.46505 * 109.46984 * 65.13986 * 10 9 7 12 12 C 1.34776 * 119.99433 * 178.29126 * 11 10 9 13 13 O 1.21585 * 120.00525 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99516 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00115 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47317 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.47208 * 55.00208 * 16 15 14 18 18 C 1.52994 * 109.47096 * 295.00088 * 16 15 14 19 19 C 1.52998 * 109.47434 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46923 * 59.99653 * 19 18 16 21 21 C 1.53002 * 109.47416 * 300.00133 * 20 19 18 22 22 H 1.08994 * 109.47102 * 300.00280 * 21 20 19 23 23 C 1.52998 * 109.47183 * 179.97438 * 21 20 19 24 24 O 1.42902 * 109.46877 * 65.00297 * 23 21 20 25 25 C 1.53002 * 109.46846 * 60.00098 * 21 20 19 26 26 C 1.52995 * 117.49955 * 231.07417 * 9 7 2 27 27 C 1.52999 * 117.50022 * 299.73264 * 9 7 2 28 28 H 0.97003 * 120.00407 * 5.06644 * 1 2 3 29 29 H 1.09004 * 109.46735 * 305.14547 * 10 9 7 30 30 H 1.09000 * 109.47406 * 185.14281 * 10 9 7 31 31 H 0.96997 * 119.99700 * 358.28870 * 11 10 9 32 32 H 0.97005 * 120.00243 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.47255 * 59.99961 * 15 14 12 34 34 H 1.09000 * 109.47353 * 300.00149 * 15 14 12 35 35 H 1.08997 * 109.47214 * 59.99720 * 18 16 15 36 36 H 1.09008 * 109.46966 * 299.99816 * 18 16 15 37 37 H 1.08995 * 109.47437 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.46981 * 300.00187 * 19 18 16 39 39 H 1.09000 * 109.46963 * 60.01002 * 20 19 18 40 40 H 1.09008 * 109.47175 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47095 * 184.99619 * 23 21 20 42 42 H 1.08997 * 109.47537 * 305.00649 * 23 21 20 43 43 H 0.96702 * 113.99892 * 179.97438 * 24 23 21 44 44 H 1.09001 * 109.47208 * 59.99809 * 25 21 20 45 45 H 1.08995 * 109.47099 * 179.97438 * 25 21 20 46 46 H 1.08999 * 117.50036 * 215.00499 * 26 9 7 47 47 H 1.09003 * 117.49863 * 0.02562 * 26 9 7 48 48 H 1.09005 * 117.49812 * 359.97438 * 27 9 7 49 49 H 1.09000 * 117.49958 * 144.97163 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1970 -0.1045 9 6 1.2582 -2.4950 0.1476 10 6 0.7021 -3.0870 -1.1490 11 7 1.8112 -3.4601 -2.0305 12 6 1.5599 -4.0372 -3.2222 13 8 0.4129 -4.2487 -3.5655 14 7 2.5802 -4.3809 -4.0330 15 6 2.3072 -5.0088 -5.3281 16 6 3.6283 -5.2945 -6.0450 17 1 4.2704 -5.8930 -5.3987 18 6 4.3258 -3.9734 -6.3747 19 6 5.6466 -4.2590 -7.0922 20 6 5.3684 -5.0258 -8.3866 21 6 4.6709 -6.3471 -8.0569 22 1 5.3131 -6.9456 -7.4109 23 6 4.3921 -7.1136 -9.3514 24 8 5.6301 -7.4819 -9.9628 25 6 3.3501 -6.0613 -7.3395 26 6 1.7471 -3.4727 1.2180 27 6 0.4419 -2.7005 1.4252 28 1 -0.4851 0.8368 -0.0742 29 1 0.0755 -2.3470 -1.6468 30 1 0.1075 -3.9711 -0.9191 31 1 2.7263 -3.2916 -1.7565 32 1 3.4954 -4.2125 -3.7590 33 1 1.7017 -4.3373 -5.9370 34 1 1.7683 -5.9433 -5.1725 35 1 4.5236 -3.4269 -5.4526 36 1 3.6837 -3.3749 -7.0211 37 1 6.1438 -3.3178 -7.3267 38 1 6.2889 -4.8577 -6.4462 39 1 4.7262 -4.4272 -9.0326 40 1 6.3094 -5.2298 -8.8976 41 1 3.8173 -8.0116 -9.1253 42 1 3.8243 -6.4807 -10.0333 43 1 5.5295 -7.9725 -10.7901 44 1 2.7078 -5.4627 -7.9854 45 1 2.8529 -7.0025 -7.1050 46 1 1.6727 -4.5378 0.9984 47 1 2.6084 -3.1749 1.8161 48 1 0.4450 -1.8950 2.1596 49 1 -0.4916 -3.2572 1.3419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355841776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:56 Heat of formation + Delta-G solvation = -112.788668 kcal Electronic energy + Delta-G solvation = -25833.919315 eV Core-core repulsion = 22180.285984 eV Total energy + Delta-G solvation = -3653.633331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05340 -40.00024 -38.54371 -37.50888 -35.63389 -34.90181 -33.95244 -32.40333 -32.11972 -28.26485 -27.30790 -26.50462 -25.76880 -23.02665 -22.96118 -21.78788 -21.46870 -21.20982 -20.71046 -19.18046 -18.17961 -18.05992 -17.05603 -16.74692 -16.48454 -16.22870 -15.96868 -15.74074 -15.47143 -15.17902 -15.03394 -14.91170 -14.41656 -14.36208 -13.93374 -13.59165 -13.51732 -13.38646 -12.99512 -12.90781 -12.84026 -12.78311 -12.42965 -12.33700 -12.02679 -11.94459 -11.86558 -11.50861 -11.34652 -11.30087 -11.07711 -11.00933 -10.83583 -10.72477 -10.44950 -10.24697 -10.02353 -9.54282 -8.08345 -6.21344 1.42514 1.45201 1.53524 1.87727 2.28471 2.43375 3.19727 3.26001 3.42300 3.65668 3.71625 3.74069 3.94428 4.07658 4.26664 4.30124 4.35130 4.43259 4.54608 4.58368 4.58572 4.67692 4.68707 4.70487 4.73365 4.76249 4.83372 4.86353 4.91299 5.01209 5.05856 5.12892 5.26607 5.28310 5.29398 5.30828 5.39899 5.45344 5.56734 5.60712 5.62340 5.64924 5.74361 5.80571 6.19054 6.38541 6.85643 6.93999 7.27424 7.47864 7.72299 8.99246 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.002544 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.783436 B =11001.486689 C =11794.500650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.005 3.995 10 C 0.199 3.801 11 N -0.716 5.716 12 C 0.694 3.306 13 O -0.648 6.648 14 N -0.732 5.732 15 C 0.146 3.854 16 C -0.083 4.083 17 H 0.087 0.913 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.083 4.083 22 H 0.071 0.929 23 C 0.078 3.922 24 O -0.593 6.593 25 C -0.101 4.101 26 C -0.175 4.175 27 C -0.160 4.160 28 H 0.258 0.742 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.406 0.594 32 H 0.408 0.592 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.395 0.605 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 -13.481 -17.127 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.005 3.995 10 C 0.074 3.926 11 N -0.369 5.369 12 C 0.394 3.606 13 O -0.531 6.531 14 N -0.389 5.389 15 C 0.022 3.978 16 C -0.101 4.101 17 H 0.105 0.895 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.102 4.102 22 H 0.090 0.910 23 C 0.001 3.999 24 O -0.402 6.402 25 C -0.139 4.139 26 C -0.212 4.212 27 C -0.198 4.198 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.242 0.758 32 H 0.245 0.755 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.245 0.755 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.442 -13.236 -16.844 24.286 hybrid contribution 0.283 1.108 -0.112 1.149 sum 11.726 -12.127 -16.956 23.918 Atomic orbital electron populations 1.70111 1.07304 1.27288 1.49906 1.25721 0.95455 1.02121 0.94459 0.85680 0.78955 0.79802 0.77934 1.20633 1.21635 1.18721 1.20649 0.93120 0.89528 1.50720 0.91757 1.19058 0.99722 0.94497 0.86253 1.20390 0.87075 0.95117 0.90006 1.44906 1.10930 1.63798 1.17256 1.16232 0.84869 0.78624 0.80907 1.90836 1.22104 1.63658 1.76531 1.44956 1.08029 1.66505 1.19424 1.21247 0.97664 0.96833 0.82098 1.21268 0.94550 0.97471 0.96856 0.89472 1.21612 0.96801 0.96387 1.00537 1.21507 0.96768 1.00337 0.96710 1.21491 1.00424 0.95346 0.97226 1.21083 0.96907 0.96459 0.95711 0.91045 1.22255 0.85512 0.98096 0.94083 1.86427 1.31653 1.78566 1.43514 1.21434 0.96696 1.00601 0.95215 1.22997 0.97323 0.96242 1.04634 1.22439 0.93810 1.01433 1.02132 0.93272 0.95707 0.95002 0.75846 0.75521 0.93278 0.92427 0.91950 0.92357 0.91758 0.91643 0.92240 0.92135 0.92687 0.92987 0.75545 0.91226 0.90623 0.89355 0.89492 0.91745 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.82 12.91 21.45 0.28 -51.54 16 2 C 0.02 1.22 5.39 84.65 0.46 1.68 16 3 Si 0.95 42.27 29.55 68.60 2.03 44.30 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.50 -25.60 8.63 25.60 0.22 -25.38 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.01 0.26 1.38 -52.93 -0.07 0.18 16 10 C 0.20 9.34 5.50 86.38 0.48 9.82 16 11 N -0.72 -27.99 5.48 -478.52 -2.62 -30.61 16 12 C 0.69 26.75 8.57 179.05 1.53 28.29 16 13 O -0.65 -30.88 16.34 -3.98 -0.07 -30.94 16 14 N -0.73 -19.92 5.29 -478.54 -2.53 -22.45 16 15 C 0.15 3.40 5.06 86.38 0.44 3.84 16 16 C -0.08 -1.32 2.23 -10.79 -0.02 -1.35 16 17 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 18 C -0.12 -1.90 5.08 30.59 0.16 -1.74 16 19 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 20 C -0.11 -1.56 5.10 30.60 0.16 -1.41 16 21 C -0.08 -1.12 2.43 -10.79 -0.03 -1.15 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 C 0.08 0.91 6.43 71.98 0.46 1.37 16 24 O -0.59 -7.83 13.19 -148.98 -1.97 -9.79 16 25 C -0.10 -1.38 4.48 30.60 0.14 -1.24 16 26 C -0.17 -6.93 9.96 30.61 0.30 -6.62 16 27 C -0.16 -7.31 9.42 30.62 0.29 -7.03 16 28 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 29 H 0.02 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.03 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.41 13.95 8.38 -92.71 -0.78 13.17 16 32 H 0.41 8.69 7.67 -92.70 -0.71 7.98 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.07 7.18 -2.39 -0.02 1.05 16 36 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.98 7.82 -2.38 -0.02 0.96 16 41 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.40 1.74 9.12 -74.06 -0.68 1.06 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 48 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 49 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -68.45 392.47 -1.42 -69.87 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -1.22 Total: 33.40 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.69 Total: -2.23 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.88 Total: -104.60 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.03 Total: -40.74 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -68.45 -1.42 -69.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355841776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.921 kcal (2) G-P(sol) polarization free energy of solvation -68.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds