Wall clock time and date at job start Fri Apr 10 2020 22:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 11 11 C 1.53194 * 108.77454 * 233.63177 * 10 9 7 12 12 C 1.53037 * 109.31104 * 305.36242 * 11 10 9 13 13 C 1.53352 * 109.61060 * 61.37187 * 12 11 10 14 14 H 1.09004 * 109.47287 * 58.55097 * 13 12 11 15 15 C 1.53000 * 109.68398 * 178.74833 * 13 12 11 16 16 N 1.46505 * 109.46969 * 184.75466 * 15 13 12 17 17 C 1.34777 * 119.99818 * 180.02562 * 16 15 13 18 18 O 1.21274 * 120.00360 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99569 * 180.02562 * 17 16 15 20 20 O 1.42902 * 109.46886 * 180.02562 * 19 17 16 21 21 C 1.42899 * 114.00081 * 179.97438 * 20 19 17 22 22 C 1.54269 * 110.03348 * 267.90781 * 21 20 19 23 23 C 1.54963 * 104.15748 * 217.13499 * 22 21 20 24 24 C 1.54884 * 102.77986 * 37.88703 * 23 22 21 25 25 C 1.53872 * 110.03481 * 150.68652 * 21 20 19 26 26 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 27 27 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58248 * 353.41531 * 10 9 7 29 29 H 1.08994 * 109.58922 * 113.70036 * 10 9 7 30 30 H 1.09003 * 109.49638 * 65.31137 * 11 10 9 31 31 H 1.08997 * 109.49741 * 185.40875 * 11 10 9 32 32 H 1.09003 * 109.46264 * 181.38909 * 12 11 10 33 33 H 1.09008 * 109.45988 * 301.35694 * 12 11 10 34 34 H 1.09002 * 109.47468 * 304.75035 * 15 13 12 35 35 H 1.08997 * 109.47209 * 64.75723 * 15 13 12 36 36 H 0.97004 * 119.99890 * 359.97438 * 16 15 13 37 37 H 1.09000 * 109.47431 * 299.99554 * 19 17 16 38 38 H 1.09000 * 109.47601 * 59.99970 * 19 17 16 39 39 H 1.09006 * 110.01804 * 29.29529 * 21 20 19 40 40 H 1.08999 * 110.48568 * 335.78037 * 22 21 20 41 41 H 1.08998 * 110.48704 * 98.42813 * 22 21 20 42 42 H 1.09001 * 110.72372 * 279.57052 * 23 22 21 43 43 H 1.09005 * 110.92300 * 156.29274 * 23 22 21 44 44 H 1.09002 * 110.48751 * 203.40572 * 24 23 22 45 45 H 1.09000 * 110.60203 * 80.82017 * 24 23 22 46 46 H 1.08998 * 110.03705 * 238.57151 * 25 21 20 47 47 H 1.08999 * 110.03479 * 359.95526 * 25 21 20 48 48 H 1.09004 * 109.58551 * 246.15355 * 26 9 7 49 49 H 1.08997 * 109.59252 * 6.43657 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 3.8176 -0.2585 -1.3888 11 6 4.4619 -1.0081 -2.5592 12 6 5.5284 -1.9650 -2.0216 13 6 4.8749 -2.9934 -1.0905 14 1 4.1079 -3.5424 -1.6367 15 6 5.9346 -3.9700 -0.5766 16 7 5.2890 -5.0163 0.2202 17 6 6.0315 -5.9928 0.7785 18 8 7.2339 -6.0056 0.6210 19 6 5.3673 -7.0694 1.5975 20 8 6.3573 -7.9808 2.0786 21 6 5.8300 -9.0460 2.8719 22 6 5.8474 -8.6527 4.3635 23 6 6.2089 -9.9683 5.0983 24 6 7.2461 -10.6172 4.1485 25 6 6.7185 -10.2948 2.7352 26 6 4.2349 -2.2633 0.0944 27 1 -0.4850 0.8400 -0.0004 28 1 2.9910 0.3503 -1.7554 29 1 4.5584 0.3816 -0.9099 30 1 3.6989 -1.5759 -3.0917 31 1 4.9244 -0.2926 -3.2390 32 1 6.0056 -2.4817 -2.8543 33 1 6.2778 -1.3994 -1.4678 34 1 6.4510 -4.4240 -1.4224 35 1 6.6535 -3.4334 0.0426 36 1 4.3273 -5.0059 0.3465 37 1 4.8502 -6.6158 2.4431 38 1 4.6491 -7.6063 0.9779 39 1 4.8117 -9.2761 2.5584 40 1 6.6056 -7.8918 4.5486 41 1 4.8653 -8.2978 4.6759 42 1 5.3305 -10.6049 5.2040 43 1 6.6532 -9.7610 6.0718 44 1 7.2842 -11.6954 4.3047 45 1 8.2315 -10.1761 4.2978 46 1 6.1314 -11.1312 2.3560 47 1 7.5515 -10.0887 2.0630 48 1 5.0117 -1.7882 0.6936 49 1 3.6843 -2.9758 0.7086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358195453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:09 Heat of formation + Delta-G solvation = -79.145224 kcal Electronic energy + Delta-G solvation = -25906.740419 eV Core-core repulsion = 22254.565977 eV Total energy + Delta-G solvation = -3652.174442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.93939 -38.96890 -38.02275 -36.03258 -34.91426 -33.06218 -31.10536 -30.81548 -29.18167 -28.86823 -27.28847 -25.50050 -25.05096 -22.06246 -21.52300 -21.06719 -20.70999 -20.44393 -19.37632 -17.43041 -17.25784 -16.68257 -16.15509 -15.73289 -15.70751 -15.40073 -15.04887 -14.57886 -14.10027 -13.89337 -13.72294 -13.63169 -13.47124 -13.22166 -12.79677 -12.61507 -12.46154 -12.23936 -12.10939 -11.78497 -11.64944 -11.50800 -11.44573 -11.39722 -10.93711 -10.86248 -10.83703 -10.62508 -10.55873 -10.17705 -9.97816 -9.81899 -9.72182 -9.67709 -9.46756 -9.00396 -8.64946 -7.01929 -5.99544 -3.35434 2.62316 2.76646 3.29494 3.46169 3.49192 3.83756 4.25115 4.26823 4.49556 4.61357 4.68828 4.80330 4.91021 4.96286 5.02045 5.13053 5.13759 5.18693 5.20975 5.25555 5.33389 5.36774 5.39634 5.55446 5.58433 5.60058 5.69823 5.75655 5.79651 5.81480 5.89361 5.99885 6.01188 6.07911 6.10114 6.27127 6.35150 6.42759 6.53899 6.54124 6.66640 6.68501 6.92401 6.94416 7.52389 7.90997 8.23690 8.27198 8.89017 9.67606 10.05764 11.16278 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002510 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.166237 B =11154.447981 C =12085.100146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.123 3.877 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.078 0.922 15 C 0.130 3.870 16 N -0.724 5.724 17 C 0.513 3.487 18 O -0.527 6.527 19 C 0.042 3.958 20 O -0.355 6.355 21 C 0.082 3.918 22 C -0.150 4.150 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.124 4.124 26 C 0.156 3.844 27 H 0.263 0.737 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.404 0.596 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.024 0.976 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 -17.871 4.040 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.140 4.140 14 H 0.097 0.903 15 C 0.006 3.994 16 N -0.378 5.378 17 C 0.297 3.703 18 O -0.402 6.402 19 C -0.038 4.038 20 O -0.273 6.273 21 C 0.024 3.976 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.161 4.161 26 C 0.030 3.970 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.042 0.958 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.084 -17.766 3.911 21.840 hybrid contribution -0.472 1.071 0.093 1.174 sum 11.612 -16.695 4.004 20.727 Atomic orbital electron populations 1.69832 1.05733 1.26608 1.52919 1.25272 0.95222 0.97642 0.99414 0.86941 0.80014 0.84596 0.77015 1.21610 1.23188 1.19593 1.18885 0.84929 0.94709 1.40418 0.89768 1.44333 1.08583 1.33246 1.46755 1.21359 0.97277 0.92029 0.89545 1.21987 0.98051 0.98553 0.98704 1.21398 0.97748 0.96729 0.98021 1.22001 0.97011 0.95859 0.99132 0.90335 1.21421 0.95563 0.87830 0.94566 1.45964 1.11451 1.27118 1.53241 1.20207 0.87617 0.82402 0.80034 1.90713 1.14386 1.75346 1.59763 1.22260 0.91651 0.91606 0.98274 1.88082 1.31846 1.38235 1.69184 1.22898 0.97146 0.87204 0.90386 1.22948 1.02337 0.98603 0.94899 1.22439 0.98981 0.96205 0.98461 1.22337 0.99128 1.00411 0.94218 1.22220 1.00192 0.95568 0.98156 1.20926 0.92414 0.91225 0.92478 0.92745 0.91033 0.95755 0.91703 0.92655 0.92744 0.92309 0.91758 0.91495 0.76080 0.90155 0.90273 0.91647 0.90204 0.91321 0.91406 0.91288 0.91503 0.91276 0.90975 0.90107 0.95842 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 13.97 55.49 0.78 -26.55 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.16 24.34 -169.99 -4.14 18.02 16 4 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.71 6.63 56.52 0.37 -6.33 16 7 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.61 -13.82 2.77 -172.32 -0.48 -14.30 16 10 C 0.12 2.62 4.21 -3.71 -0.02 2.61 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.10 -1.48 5.19 -26.53 -0.14 -1.62 16 13 C -0.12 -1.78 2.39 -90.34 -0.22 -2.00 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.13 1.75 5.08 -4.04 -0.02 1.73 16 16 N -0.72 -8.98 5.33 -60.29 -0.32 -9.30 16 17 C 0.51 7.05 7.91 -10.99 -0.09 6.96 16 18 O -0.53 -9.51 16.50 -14.35 -0.24 -9.75 16 19 C 0.04 0.44 6.26 36.01 0.23 0.67 16 20 O -0.36 -4.37 9.43 -55.14 -0.52 -4.89 16 21 C 0.08 0.73 3.38 -25.61 -0.09 0.65 16 22 C -0.15 -1.23 6.56 -25.03 -0.16 -1.40 16 23 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16 24 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 25 C -0.12 -1.00 6.61 -25.61 -0.17 -1.17 16 26 C 0.16 2.86 5.59 -3.71 -0.02 2.83 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.07 1.68 4.49 -51.93 -0.23 1.45 16 29 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.32 7.69 -40.82 -0.31 4.00 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.07 0.49 7.81 -51.93 -0.41 0.08 16 40 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -33.15 377.79 -9.56 -42.71 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.90 Total: 0.20 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.44 Total: -1.84 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.02 Total: -50.15 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.76 Total: -14.64 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.15 -9.56 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358195453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.434 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds