Wall clock time and date at job start Fri Apr 10 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 11 11 C 1.53194 * 108.77454 * 233.63177 * 10 9 7 12 12 C 1.53037 * 109.31104 * 305.36242 * 11 10 9 13 13 C 1.53352 * 109.61060 * 61.37187 * 12 11 10 14 14 H 1.09004 * 109.47287 * 58.55097 * 13 12 11 15 15 C 1.53000 * 109.68398 * 178.74833 * 13 12 11 16 16 N 1.46505 * 109.46969 * 184.75466 * 15 13 12 17 17 C 1.34777 * 119.99818 * 180.02562 * 16 15 13 18 18 O 1.21274 * 120.00360 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99569 * 180.02562 * 17 16 15 20 20 O 1.42902 * 109.46886 * 180.02562 * 19 17 16 21 21 C 1.42899 * 114.00081 * 179.97438 * 20 19 17 22 22 C 1.54269 * 110.03348 * 267.90781 * 21 20 19 23 23 C 1.54963 * 104.15748 * 217.13499 * 22 21 20 24 24 C 1.54884 * 102.77986 * 37.88703 * 23 22 21 25 25 C 1.53872 * 110.03481 * 150.68652 * 21 20 19 26 26 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 27 27 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.58248 * 353.41531 * 10 9 7 29 29 H 1.08994 * 109.58922 * 113.70036 * 10 9 7 30 30 H 1.09003 * 109.49638 * 65.31137 * 11 10 9 31 31 H 1.08997 * 109.49741 * 185.40875 * 11 10 9 32 32 H 1.09003 * 109.46264 * 181.38909 * 12 11 10 33 33 H 1.09008 * 109.45988 * 301.35694 * 12 11 10 34 34 H 1.09002 * 109.47468 * 304.75035 * 15 13 12 35 35 H 1.08997 * 109.47209 * 64.75723 * 15 13 12 36 36 H 0.97004 * 119.99890 * 359.97438 * 16 15 13 37 37 H 1.09000 * 109.47431 * 299.99554 * 19 17 16 38 38 H 1.09000 * 109.47601 * 59.99970 * 19 17 16 39 39 H 1.09006 * 110.01804 * 29.29529 * 21 20 19 40 40 H 1.08999 * 110.48568 * 335.78037 * 22 21 20 41 41 H 1.08998 * 110.48704 * 98.42813 * 22 21 20 42 42 H 1.09001 * 110.72372 * 279.57052 * 23 22 21 43 43 H 1.09005 * 110.92300 * 156.29274 * 23 22 21 44 44 H 1.09002 * 110.48751 * 203.40572 * 24 23 22 45 45 H 1.09000 * 110.60203 * 80.82017 * 24 23 22 46 46 H 1.08998 * 110.03705 * 238.57151 * 25 21 20 47 47 H 1.08999 * 110.03479 * 359.95526 * 25 21 20 48 48 H 1.09004 * 109.58551 * 246.15355 * 26 9 7 49 49 H 1.08997 * 109.59252 * 6.43657 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 3.8176 -0.2585 -1.3888 11 6 4.4619 -1.0081 -2.5592 12 6 5.5284 -1.9650 -2.0216 13 6 4.8749 -2.9934 -1.0905 14 1 4.1079 -3.5424 -1.6367 15 6 5.9346 -3.9700 -0.5766 16 7 5.2890 -5.0163 0.2202 17 6 6.0315 -5.9928 0.7785 18 8 7.2339 -6.0056 0.6210 19 6 5.3673 -7.0694 1.5975 20 8 6.3573 -7.9808 2.0786 21 6 5.8300 -9.0460 2.8719 22 6 5.8474 -8.6527 4.3635 23 6 6.2089 -9.9683 5.0983 24 6 7.2461 -10.6172 4.1485 25 6 6.7185 -10.2948 2.7352 26 6 4.2349 -2.2633 0.0944 27 1 -0.4850 0.8400 -0.0004 28 1 2.9910 0.3503 -1.7554 29 1 4.5584 0.3816 -0.9099 30 1 3.6989 -1.5759 -3.0917 31 1 4.9244 -0.2926 -3.2390 32 1 6.0056 -2.4817 -2.8543 33 1 6.2778 -1.3994 -1.4678 34 1 6.4510 -4.4240 -1.4224 35 1 6.6535 -3.4334 0.0426 36 1 4.3273 -5.0059 0.3465 37 1 4.8502 -6.6158 2.4431 38 1 4.6491 -7.6063 0.9779 39 1 4.8117 -9.2761 2.5584 40 1 6.6056 -7.8918 4.5486 41 1 4.8653 -8.2978 4.6759 42 1 5.3305 -10.6049 5.2040 43 1 6.6532 -9.7610 6.0718 44 1 7.2842 -11.6954 4.3047 45 1 8.2315 -10.1761 4.2978 46 1 6.1314 -11.1312 2.3560 47 1 7.5515 -10.0887 2.0630 48 1 5.0117 -1.7882 0.6936 49 1 3.6843 -2.9758 0.7086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358195453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:07 Heat of formation + Delta-G solvation = -100.408926 kcal Electronic energy + Delta-G solvation = -25907.662482 eV Core-core repulsion = 22254.565977 eV Total energy + Delta-G solvation = -3653.096505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97674 -39.87270 -39.34395 -36.80799 -36.25012 -34.71536 -32.85986 -32.26722 -29.95890 -29.55789 -28.12309 -27.22176 -26.31244 -23.68169 -22.96146 -21.69475 -21.62606 -21.25396 -20.74671 -18.78609 -18.18387 -18.12788 -17.25563 -17.07447 -16.75309 -16.44111 -16.19547 -15.61635 -15.46845 -15.17829 -15.00978 -14.91239 -14.66328 -14.24879 -14.16179 -13.96725 -13.73054 -13.44332 -13.28360 -13.18916 -12.88021 -12.56385 -12.43833 -12.17670 -12.11387 -12.02076 -11.94181 -11.69708 -11.59339 -11.51612 -11.48486 -11.34093 -11.25278 -10.83783 -10.65736 -10.55800 -10.09765 -8.92234 -8.16246 -5.46980 1.29316 1.41069 1.49255 1.57012 1.85317 2.41706 3.01576 3.05964 3.32069 3.63382 3.67707 3.79862 3.86215 3.96205 4.02144 4.04613 4.21130 4.24601 4.28108 4.35362 4.39704 4.53896 4.54070 4.57776 4.64647 4.74677 4.78498 4.79213 4.81528 4.84570 4.95741 4.99553 5.03511 5.08663 5.13393 5.14905 5.21650 5.26055 5.28875 5.29345 5.42921 5.45619 5.58012 5.87402 6.13364 6.18788 6.54138 6.92431 7.20443 7.63352 8.04672 9.03304 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002510 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.166237 B =11154.447981 C =12085.100146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.035 4.035 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.314 1.314 6 H -0.265 1.265 7 C -0.244 4.244 8 H 0.060 0.940 9 N -0.620 5.620 10 C 0.115 3.885 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.103 4.103 14 H 0.076 0.924 15 C 0.138 3.862 16 N -0.716 5.716 17 C 0.510 3.490 18 O -0.575 6.575 19 C 0.044 3.956 20 O -0.387 6.387 21 C 0.075 3.925 22 C -0.151 4.151 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.126 4.126 26 C 0.151 3.849 27 H 0.260 0.740 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.026 0.974 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.304 -18.922 3.678 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.230 4.230 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.243 1.243 6 H -0.190 1.190 7 C -0.373 4.373 8 H 0.077 0.923 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.123 4.123 14 H 0.095 0.905 15 C 0.014 3.986 16 N -0.370 5.370 17 C 0.297 3.703 18 O -0.454 6.454 19 C -0.036 4.036 20 O -0.306 6.306 21 C 0.017 3.983 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.161 4.161 25 C -0.163 4.163 26 C 0.027 3.973 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.233 -18.830 3.539 23.285 hybrid contribution -0.808 1.315 0.217 1.559 sum 12.425 -17.515 3.755 21.800 Atomic orbital electron populations 1.69950 1.07252 1.27067 1.55941 1.25857 0.95781 1.00726 1.00617 0.85980 0.78636 0.80763 0.77399 1.20286 1.24280 1.18977 1.18895 0.86614 0.93600 1.38211 0.92270 1.44489 1.07839 1.34486 1.47606 1.21439 0.96645 0.92142 0.90778 1.21895 0.98371 0.99076 0.97174 1.21422 0.97099 0.96306 0.98903 1.21785 0.97093 0.95833 0.97616 0.90519 1.21268 0.94856 0.87677 0.94788 1.45920 1.11901 1.26560 1.52603 1.20809 0.87078 0.82797 0.79597 1.90689 1.16505 1.76575 1.61672 1.22357 0.91350 0.90951 0.98909 1.88052 1.33390 1.39259 1.69896 1.23141 0.98184 0.86599 0.90336 1.22947 1.02251 0.98867 0.94845 1.22448 0.99412 0.95539 0.98299 1.22348 0.98633 1.01380 0.93731 1.22268 0.99714 0.95927 0.98398 1.21106 0.91766 0.90456 0.94022 0.93061 0.93575 0.95342 0.92510 0.90062 0.89824 0.91669 0.91020 0.92159 0.74947 0.88209 0.87420 0.89695 0.92271 0.90271 0.89944 0.90908 0.89908 0.92430 0.89231 0.92129 0.95646 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.97 13.97 21.65 0.30 -58.67 16 2 C -0.04 -2.01 5.23 84.86 0.44 -1.57 16 3 Si 0.94 46.21 24.34 68.60 1.67 47.88 16 4 H -0.28 -12.82 6.62 99.48 0.66 -12.16 16 5 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 6 H -0.27 -12.55 6.63 99.48 0.66 -11.89 16 7 C -0.24 -13.25 10.04 84.03 0.84 -12.41 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.62 -27.69 2.77 -699.10 -1.94 -29.63 16 10 C 0.11 4.68 4.21 86.36 0.36 5.04 16 11 C -0.13 -3.92 6.08 30.67 0.19 -3.73 16 12 C -0.10 -2.57 5.19 30.72 0.16 -2.41 16 13 C -0.10 -2.81 2.39 -10.61 -0.03 -2.84 16 14 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.14 3.42 5.08 86.38 0.44 3.86 16 16 N -0.72 -16.47 5.33 -463.06 -2.47 -18.94 16 17 C 0.51 13.42 7.91 87.66 0.69 14.11 16 18 O -0.58 -20.61 16.50 16.03 0.26 -20.34 16 19 C 0.04 0.84 6.26 71.24 0.45 1.28 16 20 O -0.39 -9.21 9.43 -129.94 -1.23 -10.44 16 21 C 0.07 1.23 3.38 31.32 0.11 1.34 16 22 C -0.15 -2.30 6.56 31.70 0.21 -2.09 16 23 C -0.12 -1.41 6.91 31.91 0.22 -1.19 16 24 C -0.12 -1.59 6.83 31.67 0.22 -1.37 16 25 C -0.13 -1.89 6.61 31.32 0.21 -1.69 16 26 C 0.15 5.31 5.59 86.36 0.48 5.79 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.05 2.11 4.49 -2.39 -0.01 2.10 16 29 H 0.03 1.14 7.07 -2.39 -0.02 1.13 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.41 8.00 7.69 -92.71 -0.71 7.29 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.09 1.04 7.81 -2.38 -0.02 1.03 16 40 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.16 7.95 -2.39 -0.02 1.14 16 48 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 2.09 7.13 -2.39 -0.02 2.07 16 Total: -1.00 -73.26 377.79 1.70 -71.55 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.11 Total: 16.45 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.99 Total: 2.13 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.10 Total: -107.23 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.96 Total: -30.78 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -73.26 1.70 -71.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358195453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.855 kcal (2) G-P(sol) polarization free energy of solvation -73.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds