Wall clock time and date at job start Fri Apr 10 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47115 * 270.00563 * 3 2 1 5 5 H 1.48502 * 109.46761 * 30.00205 * 3 2 1 6 6 H 1.48497 * 109.46951 * 149.99983 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99877 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47298 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47573 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00341 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99437 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00128 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99983 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46883 * 180.02562 * 15 14 12 17 17 H 1.08996 * 110.54695 * 61.41909 * 16 15 14 18 18 C 1.55019 * 110.61119 * 184.44711 * 16 15 14 19 19 C 1.54861 * 102.10055 * 155.41113 * 18 16 15 20 20 C 1.53888 * 104.10022 * 339.13506 * 19 18 16 21 21 C 1.52764 * 109.71280 * 238.60843 * 20 19 18 22 22 C 1.53049 * 109.47036 * 179.80911 * 21 20 19 23 23 C 1.52994 * 109.44940 * 59.54538 * 22 21 20 24 24 C 1.52993 * 109.52853 * 299.77078 * 23 22 21 25 25 C 1.52778 * 109.69342 * 117.46673 * 20 19 18 26 26 O 1.43524 * 107.53477 * 358.05172 * 20 19 18 27 27 H 0.96996 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47219 * 60.00325 * 9 7 2 29 29 H 1.08997 * 109.47536 * 300.00025 * 9 7 2 30 30 H 1.08998 * 109.46918 * 59.99899 * 10 9 7 31 31 H 1.09005 * 109.46928 * 300.00384 * 10 9 7 32 32 H 0.97004 * 119.99869 * 359.97438 * 11 10 9 33 33 H 0.97001 * 120.00236 * 0.02562 * 14 12 11 34 34 H 1.09004 * 109.46530 * 60.00682 * 15 14 12 35 35 H 1.08993 * 109.47340 * 300.01012 * 15 14 12 36 36 H 1.09008 * 110.90572 * 273.61124 * 18 16 15 37 37 H 1.09003 * 110.90288 * 37.20702 * 18 16 15 38 38 H 1.08997 * 110.50221 * 220.48222 * 19 18 16 39 39 H 1.09000 * 110.50359 * 97.79435 * 19 18 16 40 40 H 1.09005 * 109.47076 * 59.80801 * 21 20 19 41 41 H 1.09007 * 109.47448 * 299.81119 * 21 20 19 42 42 H 1.08998 * 109.47576 * 299.54664 * 22 21 20 43 43 H 1.09001 * 109.47927 * 179.53570 * 22 21 20 44 44 H 1.09002 * 109.46252 * 59.78683 * 23 22 21 45 45 H 1.09004 * 109.46038 * 179.76025 * 23 22 21 46 46 H 1.08999 * 109.47934 * 180.22657 * 24 23 22 47 47 H 1.09007 * 109.47758 * 300.24381 * 24 23 22 48 48 H 1.09006 * 109.46957 * 300.20545 * 25 20 19 49 49 H 1.08996 * 109.47246 * 60.20245 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4866 -2.6365 -0.0022 12 6 6.1605 -3.8036 -0.0026 13 8 5.5526 -4.8566 -0.0035 14 7 7.5083 -3.8036 -0.0031 15 6 8.2408 -5.0723 -0.0030 16 6 9.7450 -4.7926 -0.0030 17 1 10.0318 -4.2426 0.8932 18 6 10.5460 -6.1151 -0.1153 19 6 11.8835 -5.6334 -0.7295 20 6 11.5324 -4.2843 -1.3813 21 6 11.8516 -4.3348 -2.8744 22 6 11.4960 -2.9925 -3.5178 23 6 12.3046 -1.8779 -2.8510 24 6 11.9710 -1.8266 -1.3588 25 6 12.3279 -3.1658 -0.7103 26 8 10.1270 -4.0646 -1.1904 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1497 -0.8925 31 1 3.6586 -3.1509 0.8875 32 1 5.9716 -1.7964 -0.0019 33 1 7.9933 -2.9635 -0.0028 34 1 7.9772 -5.6440 -0.8928 35 1 7.9777 -5.6437 0.8871 36 1 10.7064 -6.5574 0.8679 37 1 10.0439 -6.8186 -0.7796 38 1 12.2351 -6.3404 -1.4808 39 1 12.6341 -5.4975 0.0491 40 1 11.2697 -5.1282 -3.3436 41 1 12.9144 -4.5337 -3.0123 42 1 10.4316 -2.7974 -3.3870 43 1 11.7313 -3.0256 -4.5815 44 1 13.3690 -2.0752 -2.9786 45 1 12.0546 -0.9223 -3.3120 46 1 12.5445 -1.0296 -0.8853 47 1 10.9059 -1.6332 -1.2309 48 1 12.0829 -3.1322 0.3514 49 1 13.3944 -3.3554 -0.8312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359117090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:12 Heat of formation + Delta-G solvation = -107.877116 kcal Electronic energy + Delta-G solvation = -26168.388724 eV Core-core repulsion = 22514.968374 eV Total energy + Delta-G solvation = -3653.420350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86064 -39.48163 -37.10043 -35.11589 -34.28859 -32.74500 -32.62532 -31.24789 -31.07345 -29.89250 -27.55344 -24.85149 -23.61483 -23.16375 -21.66096 -21.34728 -20.72796 -20.46642 -19.72468 -18.00141 -16.95128 -16.80224 -16.26613 -15.95847 -15.27262 -15.06681 -14.98852 -14.39666 -14.31594 -14.10893 -13.94798 -13.74132 -13.57786 -13.39289 -12.96956 -12.57934 -12.56265 -12.52493 -12.37806 -12.13152 -11.86081 -11.51025 -11.44045 -11.42821 -11.27701 -11.15733 -10.80190 -10.67062 -10.35527 -10.33302 -10.21533 -9.93557 -9.76349 -9.70454 -9.28122 -8.99623 -8.58883 -8.30176 -6.07407 -4.07068 2.99595 3.28281 3.35626 3.37248 3.42205 3.61554 4.10695 4.24094 4.30936 4.41189 4.49659 4.50890 4.64651 4.73296 4.79143 4.83855 4.98549 5.01169 5.11184 5.18355 5.21235 5.25663 5.30574 5.34742 5.39167 5.45889 5.54736 5.61087 5.65484 5.70159 5.80616 5.85804 5.91708 5.94057 6.00808 6.14512 6.18305 6.30816 6.57717 6.64964 6.73580 6.89264 7.12047 7.30157 7.37449 7.71897 8.37740 8.50836 8.96794 9.00080 9.52943 11.05734 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.002639 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.834458 B =10607.119055 C =11732.596414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.598 6.598 14 N -0.748 5.748 15 C 0.150 3.850 16 C 0.064 3.936 17 H 0.075 0.925 18 C -0.146 4.146 19 C -0.147 4.147 20 C 0.106 3.894 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.128 4.128 26 O -0.351 6.351 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.306 -7.932 -2.302 33.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.405 5.405 15 C 0.025 3.975 16 C 0.006 3.994 17 H 0.093 0.907 18 C -0.184 4.184 19 C -0.184 4.184 20 C 0.067 3.933 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.166 4.166 26 O -0.270 6.270 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.230 0.770 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.397 -8.674 -2.439 32.664 hybrid contribution 0.977 1.609 0.148 1.888 sum 32.374 -7.065 -2.291 33.215 Atomic orbital electron populations 1.69907 1.06283 1.26997 1.50610 1.25001 0.94762 0.99132 0.94432 0.86744 0.80255 0.83543 0.78483 1.20245 1.21326 1.19091 1.20930 0.88682 0.94900 1.51425 0.90584 1.19795 0.97883 0.91502 0.96771 1.21358 0.74855 0.99761 1.01435 1.45500 1.08863 1.06263 1.78974 1.16019 0.81249 0.84807 0.78004 1.90897 1.67805 1.30607 1.58329 1.44965 1.04899 1.09083 1.81510 1.21147 0.87365 0.86132 1.02819 1.23411 0.94384 0.92104 0.89534 0.90725 1.23093 0.95449 0.97571 1.02282 1.23010 0.97982 0.96765 1.00686 1.21893 0.82302 0.93456 0.95661 1.21633 1.01134 0.98511 0.93238 1.21484 1.01234 0.94096 0.98768 1.21521 0.99617 0.98779 0.95689 1.21455 1.02286 0.96353 0.95305 1.21965 0.99621 0.95351 0.99643 1.88954 1.22600 1.71346 1.44108 0.92593 0.96052 0.96471 0.92216 0.92204 0.77605 0.76979 0.91109 0.90551 0.89922 0.89934 0.90264 0.90537 0.91291 0.91124 0.90954 0.92240 0.92442 0.92062 0.92310 0.91091 0.91799 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.18 5.61 -4.04 -0.02 3.16 16 11 N -0.74 -13.02 5.56 -65.23 -0.36 -13.39 16 12 C 0.70 12.40 8.57 -86.92 -0.74 11.65 16 13 O -0.60 -13.06 16.34 5.29 0.09 -12.97 16 14 N -0.75 -9.75 5.49 -65.23 -0.36 -10.11 16 15 C 0.15 1.67 5.44 -4.04 -0.02 1.65 16 16 C 0.06 0.53 3.35 -25.66 -0.09 0.44 16 17 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 18 C -0.15 -0.94 6.59 -24.68 -0.16 -1.10 16 19 C -0.15 -0.86 6.26 -25.29 -0.16 -1.02 16 20 C 0.11 0.77 0.71 -90.39 -0.06 0.71 16 21 C -0.11 -0.76 4.72 -26.83 -0.13 -0.89 16 22 C -0.12 -0.92 5.80 -26.71 -0.15 -1.07 16 23 C -0.12 -0.84 5.91 -26.74 -0.16 -0.99 16 24 C -0.12 -0.85 5.80 -26.72 -0.15 -1.01 16 25 C -0.13 -0.85 4.65 -26.83 -0.12 -0.97 16 26 O -0.35 -3.31 9.27 -35.23 -0.33 -3.63 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 29 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.39 5.75 8.49 -40.82 -0.35 5.40 16 33 H 0.40 4.31 8.44 -40.82 -0.34 3.97 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 39 H 0.08 0.37 7.68 -51.93 -0.40 -0.02 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.62 7.76 -51.93 -0.40 0.22 16 48 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -33.60 382.40 -10.60 -44.20 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.98 Total: 3.77 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.53 Total: -3.37 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.05 Total: -50.43 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.24 Total: -16.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.60 -10.60 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359117090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.676 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds