Wall clock time and date at job start Fri Apr 10 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47115 * 270.00563 * 3 2 1 5 5 H 1.48502 * 109.46761 * 30.00205 * 3 2 1 6 6 H 1.48497 * 109.46951 * 149.99983 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99877 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47298 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47573 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00341 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99437 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00128 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99983 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46883 * 180.02562 * 15 14 12 17 17 H 1.08996 * 110.54695 * 61.41909 * 16 15 14 18 18 C 1.55019 * 110.61119 * 184.44711 * 16 15 14 19 19 C 1.54861 * 102.10055 * 155.41113 * 18 16 15 20 20 C 1.53888 * 104.10022 * 339.13506 * 19 18 16 21 21 C 1.52764 * 109.71280 * 238.60843 * 20 19 18 22 22 C 1.53049 * 109.47036 * 179.80911 * 21 20 19 23 23 C 1.52994 * 109.44940 * 59.54538 * 22 21 20 24 24 C 1.52993 * 109.52853 * 299.77078 * 23 22 21 25 25 C 1.52778 * 109.69342 * 117.46673 * 20 19 18 26 26 O 1.43524 * 107.53477 * 358.05172 * 20 19 18 27 27 H 0.96996 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47219 * 60.00325 * 9 7 2 29 29 H 1.08997 * 109.47536 * 300.00025 * 9 7 2 30 30 H 1.08998 * 109.46918 * 59.99899 * 10 9 7 31 31 H 1.09005 * 109.46928 * 300.00384 * 10 9 7 32 32 H 0.97004 * 119.99869 * 359.97438 * 11 10 9 33 33 H 0.97001 * 120.00236 * 0.02562 * 14 12 11 34 34 H 1.09004 * 109.46530 * 60.00682 * 15 14 12 35 35 H 1.08993 * 109.47340 * 300.01012 * 15 14 12 36 36 H 1.09008 * 110.90572 * 273.61124 * 18 16 15 37 37 H 1.09003 * 110.90288 * 37.20702 * 18 16 15 38 38 H 1.08997 * 110.50221 * 220.48222 * 19 18 16 39 39 H 1.09000 * 110.50359 * 97.79435 * 19 18 16 40 40 H 1.09005 * 109.47076 * 59.80801 * 21 20 19 41 41 H 1.09007 * 109.47448 * 299.81119 * 21 20 19 42 42 H 1.08998 * 109.47576 * 299.54664 * 22 21 20 43 43 H 1.09001 * 109.47927 * 179.53570 * 22 21 20 44 44 H 1.09002 * 109.46252 * 59.78683 * 23 22 21 45 45 H 1.09004 * 109.46038 * 179.76025 * 23 22 21 46 46 H 1.08999 * 109.47934 * 180.22657 * 24 23 22 47 47 H 1.09007 * 109.47758 * 300.24381 * 24 23 22 48 48 H 1.09006 * 109.46957 * 300.20545 * 25 20 19 49 49 H 1.08996 * 109.47246 * 60.20245 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4866 -2.6365 -0.0022 12 6 6.1605 -3.8036 -0.0026 13 8 5.5526 -4.8566 -0.0035 14 7 7.5083 -3.8036 -0.0031 15 6 8.2408 -5.0723 -0.0030 16 6 9.7450 -4.7926 -0.0030 17 1 10.0318 -4.2426 0.8932 18 6 10.5460 -6.1151 -0.1153 19 6 11.8835 -5.6334 -0.7295 20 6 11.5324 -4.2843 -1.3813 21 6 11.8516 -4.3348 -2.8744 22 6 11.4960 -2.9925 -3.5178 23 6 12.3046 -1.8779 -2.8510 24 6 11.9710 -1.8266 -1.3588 25 6 12.3279 -3.1658 -0.7103 26 8 10.1270 -4.0646 -1.1904 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1497 -0.8925 31 1 3.6586 -3.1509 0.8875 32 1 5.9716 -1.7964 -0.0019 33 1 7.9933 -2.9635 -0.0028 34 1 7.9772 -5.6440 -0.8928 35 1 7.9777 -5.6437 0.8871 36 1 10.7064 -6.5574 0.8679 37 1 10.0439 -6.8186 -0.7796 38 1 12.2351 -6.3404 -1.4808 39 1 12.6341 -5.4975 0.0491 40 1 11.2697 -5.1282 -3.3436 41 1 12.9144 -4.5337 -3.0123 42 1 10.4316 -2.7974 -3.3870 43 1 11.7313 -3.0256 -4.5815 44 1 13.3690 -2.0752 -2.9786 45 1 12.0546 -0.9223 -3.3120 46 1 12.5445 -1.0296 -0.8853 47 1 10.9059 -1.6332 -1.2309 48 1 12.0829 -3.1322 0.3514 49 1 13.3944 -3.3554 -0.8312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359117090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:11 Heat of formation + Delta-G solvation = -130.939574 kcal Electronic energy + Delta-G solvation = -26169.388787 eV Core-core repulsion = 22514.968374 eV Total energy + Delta-G solvation = -3654.420414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.50186 -40.83868 -37.78861 -36.69803 -35.54498 -34.77262 -33.18939 -32.34572 -31.71207 -31.30295 -28.46270 -26.55540 -24.46342 -23.70793 -22.67104 -22.34779 -22.10169 -21.62125 -20.28459 -19.40809 -18.88501 -17.63059 -17.26198 -16.82897 -16.58483 -16.29973 -15.90466 -15.57965 -15.32455 -15.27099 -15.13564 -14.84277 -14.61451 -14.58064 -14.03812 -13.92798 -13.36951 -13.32501 -13.08279 -13.04480 -12.96908 -12.63547 -12.42979 -12.21587 -12.15401 -12.14621 -12.00550 -11.75770 -11.75360 -11.53407 -11.38517 -11.29681 -11.20003 -10.87344 -10.78402 -10.37411 -10.33907 -9.72779 -8.29529 -6.36694 1.39424 1.42007 1.53408 1.73971 2.16654 2.37398 2.78004 3.05429 3.36937 3.55764 3.72245 3.78911 3.94375 3.99284 4.09317 4.20008 4.30359 4.32212 4.37300 4.45230 4.46758 4.57644 4.60411 4.65536 4.66531 4.76267 4.77956 4.86179 4.96345 4.96875 4.98673 5.12702 5.14510 5.16525 5.21633 5.32160 5.32584 5.39096 5.41901 5.44922 5.48050 5.48625 5.60145 5.67287 6.02914 6.13775 6.23962 6.70497 7.13370 7.27673 7.59988 8.87376 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.002639 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.834458 B =10607.119055 C =11732.596414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.011 4.011 10 C 0.165 3.835 11 N -0.732 5.732 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.727 5.727 15 C 0.148 3.852 16 C 0.070 3.930 17 H 0.089 0.911 18 C -0.144 4.144 19 C -0.142 4.142 20 C 0.101 3.899 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.125 4.125 26 O -0.373 6.373 27 H 0.268 0.732 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.409 0.591 33 H 0.411 0.589 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.291 -6.703 -1.829 36.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.160 1.160 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.040 3.960 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.525 6.525 14 N -0.384 5.384 15 C 0.023 3.977 16 C 0.012 3.988 17 H 0.107 0.893 18 C -0.182 4.182 19 C -0.179 4.179 20 C 0.061 3.939 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.163 4.163 26 O -0.293 6.293 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 35.461 -7.437 -1.967 36.286 hybrid contribution -0.305 1.130 -0.039 1.171 sum 35.157 -6.307 -2.006 35.774 Atomic orbital electron populations 1.70076 1.08566 1.28435 1.52011 1.26080 0.95700 1.03855 0.93665 0.85527 0.79656 0.77317 0.79298 1.19068 1.21147 1.16010 1.21250 0.91538 0.93424 1.51523 0.95265 1.19637 0.94402 0.92819 0.98014 1.20872 0.77148 0.98259 0.99705 1.45122 1.07295 1.07300 1.79043 1.16175 0.82514 0.83942 0.77730 1.90870 1.69115 1.32179 1.60305 1.44833 1.03188 1.10673 1.79663 1.21296 0.89276 0.85026 1.02058 1.23374 0.92176 0.93411 0.89816 0.89344 1.23104 0.95408 0.96445 1.03219 1.23013 0.97826 0.95899 1.01182 1.22055 0.81323 0.94617 0.95856 1.21660 1.02050 0.97599 0.93213 1.21462 0.99783 0.95042 0.99315 1.21510 1.00164 0.98240 0.95497 1.21449 1.01210 0.97240 0.95573 1.21959 1.00323 0.94434 0.99537 1.88940 1.24146 1.71656 1.44536 0.92307 0.94417 0.94772 0.94251 0.93968 0.75512 0.75342 0.92866 0.90399 0.88197 0.90667 0.89552 0.88911 0.92253 0.89308 0.93515 0.91872 0.91124 0.92439 0.91571 0.92961 0.91516 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.00 0.23 5.47 84.65 0.46 0.70 16 3 Si 0.96 42.99 27.47 68.60 1.88 44.88 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 7 C -0.54 -31.43 9.66 25.60 0.25 -31.19 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 10 C 0.16 7.10 5.61 86.38 0.48 7.58 16 11 N -0.73 -24.93 5.56 -478.54 -2.66 -27.59 16 12 C 0.70 24.42 8.57 179.06 1.53 25.95 16 13 O -0.64 -28.58 16.34 -3.98 -0.07 -28.64 16 14 N -0.73 -18.15 5.49 -478.55 -2.63 -20.78 16 15 C 0.15 3.18 5.44 86.38 0.47 3.65 16 16 C 0.07 1.03 3.35 31.29 0.10 1.14 16 17 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 18 C -0.14 -1.54 6.59 31.92 0.21 -1.33 16 19 C -0.14 -1.24 6.26 31.53 0.20 -1.05 16 20 C 0.10 1.24 0.71 -10.65 -0.01 1.23 16 21 C -0.11 -1.35 4.72 30.53 0.14 -1.20 16 22 C -0.12 -1.73 5.80 30.61 0.18 -1.55 16 23 C -0.12 -1.45 5.91 30.59 0.18 -1.27 16 24 C -0.12 -1.49 5.80 30.60 0.18 -1.31 16 25 C -0.12 -1.30 4.65 30.53 0.14 -1.16 16 26 O -0.37 -6.51 9.27 -148.98 -1.38 -7.89 16 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 29 H 0.03 1.46 7.57 -2.39 -0.02 1.45 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.41 11.01 8.49 -92.71 -0.79 10.23 16 33 H 0.41 8.13 8.44 -92.71 -0.78 7.35 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 38 H 0.09 0.66 7.69 -2.39 -0.02 0.64 16 39 H 0.09 0.54 7.68 -2.39 -0.02 0.53 16 40 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.09 0.78 8.14 -2.38 -0.02 0.77 16 42 H 0.05 0.91 7.76 -2.39 -0.02 0.89 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.05 0.85 7.76 -2.38 -0.02 0.84 16 48 H 0.07 0.67 8.11 -2.38 -0.02 0.65 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -75.26 382.40 -0.60 -75.86 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.70 Total: 24.11 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.65 Total: -0.19 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.99 Total: -108.12 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.45 Total: -36.54 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Total: -75.26 -0.60 -75.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359117090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.078 kcal (2) G-P(sol) polarization free energy of solvation -75.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds