Wall clock time and date at job start Fri Apr 10 2020 22:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00152 * 2 1 4 4 H 1.48505 * 109.46997 * 270.00035 * 3 2 1 5 5 H 1.48499 * 109.46956 * 30.00082 * 3 2 1 6 6 H 1.48494 * 109.47027 * 150.00138 * 3 2 1 7 7 C 1.37876 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46988 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47207 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00039 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00112 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99751 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99690 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47190 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.54302 * 307.86592 * 16 15 14 18 18 C 1.55004 * 110.61309 * 184.99809 * 16 15 14 19 19 C 1.54863 * 102.10129 * 204.59804 * 18 16 15 20 20 C 1.53897 * 104.10188 * 20.84534 * 19 18 16 21 21 C 1.52754 * 109.71262 * 121.43952 * 20 19 18 22 22 C 1.53048 * 109.48537 * 180.12042 * 21 20 19 23 23 C 1.52991 * 109.45692 * 300.47171 * 22 21 20 24 24 C 1.52997 * 109.51488 * 60.25048 * 23 22 21 25 25 C 1.52783 * 109.66946 * 242.57744 * 20 19 18 26 26 O 1.43525 * 107.52798 * 1.97511 * 20 19 18 27 27 H 0.96998 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47159 * 59.99903 * 9 7 2 29 29 H 1.09001 * 109.47117 * 300.00247 * 9 7 2 30 30 H 1.09000 * 109.47469 * 59.99824 * 10 9 7 31 31 H 1.09001 * 109.47174 * 299.99943 * 10 9 7 32 32 H 0.97001 * 119.99805 * 359.97438 * 11 10 9 33 33 H 0.97001 * 120.00092 * 359.97438 * 14 12 11 34 34 H 1.08997 * 109.47307 * 59.99801 * 15 14 12 35 35 H 1.09005 * 109.47071 * 299.99272 * 15 14 12 36 36 H 1.09003 * 110.90637 * 86.39785 * 18 16 15 37 37 H 1.08998 * 110.90714 * 322.79737 * 18 16 15 38 38 H 1.09001 * 110.50936 * 262.18255 * 19 18 16 39 39 H 1.09004 * 110.61930 * 139.55315 * 19 18 16 40 40 H 1.09001 * 109.47280 * 60.11459 * 21 20 19 41 41 H 1.09004 * 109.47052 * 300.12732 * 21 20 19 42 42 H 1.09003 * 109.47468 * 180.47447 * 22 21 20 43 43 H 1.09000 * 109.46999 * 60.47080 * 22 21 20 44 44 H 1.09002 * 109.46303 * 180.26275 * 23 22 21 45 45 H 1.08994 * 109.46362 * 300.24068 * 23 22 21 46 46 H 1.09000 * 109.47764 * 59.73104 * 24 23 22 47 47 H 1.09006 * 109.47394 * 179.74334 * 24 23 22 48 48 H 1.09001 * 109.46749 * 299.83644 * 25 20 19 49 49 H 1.08995 * 109.47083 * 59.83233 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5127 -7.2652 0.0008 15 6 2.2452 -8.5339 0.0009 16 6 1.2509 -9.6969 0.0016 17 1 0.5264 -9.5802 0.8076 18 6 1.9949 -11.0508 0.1281 19 6 0.9878 -12.0360 -0.5149 20 6 0.0900 -11.1393 -1.3857 21 6 0.1578 -11.5998 -2.8405 22 6 -0.7343 -10.7030 -3.7021 23 6 -2.1766 -10.7839 -3.1981 24 6 -2.2375 -10.3093 -1.7448 25 6 -1.3497 -11.2057 -0.8785 26 8 0.5837 -9.7961 -1.2756 27 1 -0.4849 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 2.8719 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 0.5427 -4.9308 0.0008 33 1 0.5426 -7.2651 0.0007 34 1 2.8718 -8.5916 0.8908 35 1 2.8718 -8.5917 -0.8892 36 1 2.1706 -11.3018 1.1742 37 1 2.9316 -11.0334 -0.4289 38 1 0.3981 -12.5353 0.2539 39 1 1.5082 -12.7689 -1.1316 40 1 -0.1873 -12.6313 -2.9116 41 1 1.1869 -11.5360 -3.1943 42 1 -0.6924 -11.0370 -4.7388 43 1 -0.3840 -9.6728 -3.6378 44 1 -2.8128 -10.1488 -3.8145 45 1 -2.5251 -11.8148 -3.2584 46 1 -1.8847 -9.2798 -1.6836 47 1 -3.2661 -10.3629 -1.3879 48 1 -1.7072 -12.2339 -0.9339 49 1 -1.3868 -10.8634 0.1556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359117091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:15 Heat of formation + Delta-G solvation = -112.176579 kcal Electronic energy + Delta-G solvation = -26028.579758 eV Core-core repulsion = 22374.972969 eV Total energy + Delta-G solvation = -3653.606789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.81293 -39.40443 -37.05061 -35.00088 -34.22818 -32.78296 -32.58303 -31.18689 -30.99972 -29.45950 -27.41561 -24.73835 -23.62066 -23.12309 -21.64070 -21.31003 -20.93220 -20.39554 -19.68016 -17.96495 -16.86800 -16.32210 -16.23180 -15.86293 -15.19913 -15.01259 -14.93353 -14.48364 -14.33944 -14.14721 -13.95059 -13.59795 -13.40776 -13.34916 -12.85572 -12.56903 -12.47906 -12.28276 -12.24485 -12.09604 -11.82635 -11.45422 -11.39419 -11.23479 -11.14183 -10.99759 -10.75763 -10.63105 -10.59713 -10.31246 -10.26357 -9.88167 -9.71721 -9.50722 -9.21825 -8.93955 -8.44068 -8.17209 -6.05612 -4.07988 3.08755 3.32341 3.38228 3.42650 3.45151 3.68885 4.14740 4.28061 4.35597 4.42994 4.54965 4.56120 4.69337 4.80516 4.83559 4.88275 5.04245 5.05660 5.15986 5.22403 5.25118 5.31476 5.34482 5.38103 5.42884 5.48828 5.58697 5.64589 5.69516 5.74028 5.85742 5.90001 5.96683 5.98245 6.04872 6.22867 6.36018 6.45817 6.65879 6.76929 6.83687 7.07854 7.32085 7.62199 7.68526 7.94060 8.30765 8.51609 8.97298 9.07956 9.56525 11.06139 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.002341 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.283712 B =11957.866118 C =12824.478814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.601 6.601 14 N -0.750 5.750 15 C 0.150 3.850 16 C 0.064 3.936 17 H 0.075 0.925 18 C -0.146 4.146 19 C -0.147 4.147 20 C 0.106 3.894 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.128 4.128 26 O -0.350 6.350 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.393 0.607 33 H 0.396 0.604 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -29.312 -2.258 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.480 6.480 14 N -0.406 5.406 15 C 0.025 3.975 16 C 0.006 3.994 17 H 0.093 0.907 18 C -0.184 4.184 19 C -0.185 4.185 20 C 0.066 3.934 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.166 4.166 26 O -0.270 6.270 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.585 -28.992 -2.415 29.312 hybrid contribution -0.566 0.731 0.178 0.942 sum -4.152 -28.261 -2.237 28.651 Atomic orbital electron populations 1.69960 1.06086 1.26802 1.50555 1.24998 0.94892 0.99389 0.95061 0.86512 0.79840 0.83017 0.78183 1.20571 1.21206 1.19725 1.21064 0.93276 0.90385 1.51114 0.92222 1.19324 0.94267 0.91087 0.97793 1.21574 0.95613 0.80460 1.00585 1.45516 1.09824 1.05315 1.78565 1.16049 0.85600 0.80500 0.77993 1.90880 1.11809 1.86732 1.58593 1.45016 1.09527 1.04464 1.81632 1.21117 0.93161 0.80388 1.02820 1.23398 0.93825 0.94773 0.87399 0.90699 1.23079 0.99336 0.93863 1.02119 1.23010 0.97499 0.98492 0.99457 1.21896 0.93007 0.82810 0.95654 1.21628 1.00698 0.99061 0.93109 1.21487 0.94761 1.01056 0.98302 1.21518 0.96808 1.00908 0.96355 1.21463 0.98889 1.00363 0.94727 1.21969 0.94681 1.00380 0.99545 1.88974 1.73893 1.28503 1.35605 0.92896 0.95968 0.95992 0.92846 0.92836 0.77414 0.77055 0.90561 0.91019 0.89932 0.89964 0.90553 0.90291 0.91137 0.91318 0.92261 0.90940 0.92048 0.92463 0.91020 0.92283 0.91350 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 11 N -0.74 -13.73 5.56 -65.23 -0.36 -14.09 16 12 C 0.70 12.89 8.57 -86.92 -0.74 12.15 16 13 O -0.60 -13.46 16.34 5.29 0.09 -13.37 16 14 N -0.75 -10.24 5.56 -65.22 -0.36 -10.60 16 15 C 0.15 1.75 5.42 -4.04 -0.02 1.73 16 16 C 0.06 0.56 3.31 -25.67 -0.08 0.48 16 17 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 18 C -0.15 -1.00 6.59 -24.69 -0.16 -1.16 16 19 C -0.15 -0.91 6.26 -25.28 -0.16 -1.07 16 20 C 0.11 0.81 0.71 -90.39 -0.06 0.75 16 21 C -0.11 -0.80 4.72 -26.83 -0.13 -0.92 16 22 C -0.12 -0.96 5.80 -26.71 -0.15 -1.12 16 23 C -0.12 -0.88 5.91 -26.74 -0.16 -1.04 16 24 C -0.12 -0.91 5.80 -26.71 -0.15 -1.07 16 25 C -0.13 -0.91 4.65 -26.82 -0.12 -1.03 16 26 O -0.35 -3.52 9.42 -35.23 -0.33 -3.85 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.39 6.33 8.49 -40.82 -0.35 5.99 16 33 H 0.40 4.53 8.49 -40.82 -0.35 4.18 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 38 H 0.08 0.40 7.68 -51.93 -0.40 0.00 16 39 H 0.08 0.43 7.69 -51.93 -0.40 0.04 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.67 7.76 -51.93 -0.40 0.27 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -32.96 386.21 -10.98 -43.94 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.02 Total: 3.71 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.53 Total: -2.46 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.01 Total: -50.46 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.25 Total: -17.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.96 -10.98 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359117091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.232 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds