Wall clock time and date at job start Fri Apr 10 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00152 * 2 1 4 4 H 1.48505 * 109.46997 * 270.00035 * 3 2 1 5 5 H 1.48499 * 109.46956 * 30.00082 * 3 2 1 6 6 H 1.48494 * 109.47027 * 150.00138 * 3 2 1 7 7 C 1.37876 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46988 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47207 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00039 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00112 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99751 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99690 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47190 * 179.97438 * 15 14 12 17 17 H 1.09005 * 110.54302 * 307.86592 * 16 15 14 18 18 C 1.55004 * 110.61309 * 184.99809 * 16 15 14 19 19 C 1.54863 * 102.10129 * 204.59804 * 18 16 15 20 20 C 1.53897 * 104.10188 * 20.84534 * 19 18 16 21 21 C 1.52754 * 109.71262 * 121.43952 * 20 19 18 22 22 C 1.53048 * 109.48537 * 180.12042 * 21 20 19 23 23 C 1.52991 * 109.45692 * 300.47171 * 22 21 20 24 24 C 1.52997 * 109.51488 * 60.25048 * 23 22 21 25 25 C 1.52783 * 109.66946 * 242.57744 * 20 19 18 26 26 O 1.43525 * 107.52798 * 1.97511 * 20 19 18 27 27 H 0.96998 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47159 * 59.99903 * 9 7 2 29 29 H 1.09001 * 109.47117 * 300.00247 * 9 7 2 30 30 H 1.09000 * 109.47469 * 59.99824 * 10 9 7 31 31 H 1.09001 * 109.47174 * 299.99943 * 10 9 7 32 32 H 0.97001 * 119.99805 * 359.97438 * 11 10 9 33 33 H 0.97001 * 120.00092 * 359.97438 * 14 12 11 34 34 H 1.08997 * 109.47307 * 59.99801 * 15 14 12 35 35 H 1.09005 * 109.47071 * 299.99272 * 15 14 12 36 36 H 1.09003 * 110.90637 * 86.39785 * 18 16 15 37 37 H 1.08998 * 110.90714 * 322.79737 * 18 16 15 38 38 H 1.09001 * 110.50936 * 262.18255 * 19 18 16 39 39 H 1.09004 * 110.61930 * 139.55315 * 19 18 16 40 40 H 1.09001 * 109.47280 * 60.11459 * 21 20 19 41 41 H 1.09004 * 109.47052 * 300.12732 * 21 20 19 42 42 H 1.09003 * 109.47468 * 180.47447 * 22 21 20 43 43 H 1.09000 * 109.46999 * 60.47080 * 22 21 20 44 44 H 1.09002 * 109.46303 * 180.26275 * 23 22 21 45 45 H 1.08994 * 109.46362 * 300.24068 * 23 22 21 46 46 H 1.09000 * 109.47764 * 59.73104 * 24 23 22 47 47 H 1.09006 * 109.47394 * 179.74334 * 24 23 22 48 48 H 1.09001 * 109.46749 * 299.83644 * 25 20 19 49 49 H 1.08995 * 109.47083 * 59.83233 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5127 -7.2652 0.0008 15 6 2.2452 -8.5339 0.0009 16 6 1.2509 -9.6969 0.0016 17 1 0.5264 -9.5802 0.8076 18 6 1.9949 -11.0508 0.1281 19 6 0.9878 -12.0360 -0.5149 20 6 0.0900 -11.1393 -1.3857 21 6 0.1578 -11.5998 -2.8405 22 6 -0.7343 -10.7030 -3.7021 23 6 -2.1766 -10.7839 -3.1981 24 6 -2.2375 -10.3093 -1.7448 25 6 -1.3497 -11.2057 -0.8785 26 8 0.5837 -9.7961 -1.2756 27 1 -0.4849 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 2.8719 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 0.5427 -4.9308 0.0008 33 1 0.5426 -7.2651 0.0007 34 1 2.8718 -8.5916 0.8908 35 1 2.8718 -8.5917 -0.8892 36 1 2.1706 -11.3018 1.1742 37 1 2.9316 -11.0334 -0.4289 38 1 0.3981 -12.5353 0.2539 39 1 1.5082 -12.7689 -1.1316 40 1 -0.1873 -12.6313 -2.9116 41 1 1.1869 -11.5360 -3.1943 42 1 -0.6924 -11.0370 -4.7388 43 1 -0.3840 -9.6728 -3.6378 44 1 -2.8128 -10.1488 -3.8145 45 1 -2.5251 -11.8148 -3.2584 46 1 -1.8847 -9.2798 -1.6836 47 1 -3.2661 -10.3629 -1.3879 48 1 -1.7072 -12.2339 -0.9339 49 1 -1.3868 -10.8634 0.1556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359117091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:14 Heat of formation + Delta-G solvation = -133.612385 kcal Electronic energy + Delta-G solvation = -26029.509285 eV Core-core repulsion = 22374.972969 eV Total energy + Delta-G solvation = -3654.536315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49717 -40.83281 -37.78625 -36.65740 -35.55566 -34.79674 -33.18657 -32.13772 -31.70084 -31.06839 -28.38480 -26.54810 -24.51774 -23.71557 -22.91921 -22.36611 -22.05571 -21.65433 -20.29357 -19.40146 -18.42315 -17.64519 -17.21826 -16.83053 -16.55357 -16.48303 -15.95603 -15.58495 -15.27079 -15.18482 -15.11035 -14.82677 -14.61283 -14.27747 -14.04456 -13.90007 -13.37016 -13.21110 -13.07803 -13.00318 -12.91142 -12.63889 -12.52013 -12.44439 -12.22953 -12.17119 -12.01309 -11.75172 -11.68408 -11.50399 -11.38619 -11.26318 -11.16375 -10.87682 -10.60471 -10.35452 -10.34958 -9.71546 -8.23702 -6.34102 1.42006 1.42931 1.54307 1.76492 2.16653 2.41765 2.78388 3.11028 3.37406 3.55423 3.72592 3.79079 3.93334 3.98837 4.08890 4.19932 4.30042 4.34558 4.45599 4.48294 4.51972 4.57215 4.59193 4.65147 4.65966 4.77548 4.85301 4.87032 4.96208 4.96511 4.98221 5.12501 5.14860 5.21062 5.31145 5.31686 5.32107 5.38707 5.47578 5.48642 5.52427 5.59407 5.59513 5.79040 6.03274 6.14260 6.17485 6.79045 7.11639 7.35183 7.59238 8.88393 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.002341 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.283712 B =11957.866118 C =12824.478814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.730 5.730 15 C 0.148 3.852 16 C 0.069 3.931 17 H 0.087 0.913 18 C -0.143 4.143 19 C -0.141 4.141 20 C 0.099 3.901 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.125 4.125 26 O -0.375 6.375 27 H 0.266 0.734 28 H 0.007 0.993 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.406 0.594 33 H 0.409 0.591 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -30.901 -1.756 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.389 5.389 12 C 0.397 3.603 13 O -0.524 6.524 14 N -0.386 5.386 15 C 0.024 3.976 16 C 0.011 3.989 17 H 0.105 0.895 18 C -0.181 4.181 19 C -0.179 4.179 20 C 0.060 3.940 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.163 4.163 26 O -0.295 6.295 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.241 0.759 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.943 -30.631 -1.914 30.943 hybrid contribution -0.510 1.173 -0.018 1.280 sum -4.454 -29.458 -1.932 29.855 Atomic orbital electron populations 1.70063 1.07563 1.28006 1.51047 1.25886 0.95814 1.03132 0.94392 0.85428 0.78630 0.78358 0.78529 1.19771 1.20425 1.19021 1.21469 0.93618 0.91885 1.51517 0.92267 1.19123 0.94213 0.91677 0.96302 1.21072 0.94621 0.81102 0.99562 1.45223 1.10333 1.04488 1.78812 1.16168 0.85133 0.81281 0.77719 1.90850 1.13690 1.87384 1.60431 1.44909 1.10218 1.03730 1.79786 1.21272 0.93911 0.80314 1.02105 1.23369 0.93596 0.94414 0.87474 0.89482 1.23089 0.99058 0.92650 1.03290 1.23012 0.97119 0.98123 0.99629 1.22077 0.93705 0.82084 0.96125 1.21657 1.00070 0.99863 0.92871 1.21467 0.95463 0.99662 0.99061 1.21509 0.96175 1.01682 0.96028 1.21458 0.99456 0.99371 0.95287 1.21966 0.93977 1.01059 0.99255 1.88963 1.74208 1.30192 1.36130 0.92530 0.97459 0.97246 0.93717 0.94005 0.75895 0.75516 0.90233 0.92807 0.88168 0.90496 0.88927 0.89373 0.89147 0.92117 0.91694 0.93732 0.92517 0.90930 0.93279 0.91581 0.89636 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.27 5.09 29.85 0.15 1.42 16 10 C 0.16 7.30 5.61 86.38 0.48 7.79 16 11 N -0.73 -27.50 5.56 -478.54 -2.66 -30.16 16 12 C 0.70 25.84 8.57 179.05 1.53 27.38 16 13 O -0.64 -29.12 16.34 -3.99 -0.07 -29.19 16 14 N -0.73 -19.68 5.56 -478.52 -2.66 -22.34 16 15 C 0.15 3.40 5.42 86.38 0.47 3.87 16 16 C 0.07 1.12 3.31 31.28 0.10 1.23 16 17 H 0.09 1.22 8.12 -2.38 -0.02 1.20 16 18 C -0.14 -1.65 6.59 31.92 0.21 -1.44 16 19 C -0.14 -1.36 6.26 31.53 0.20 -1.16 16 20 C 0.10 1.35 0.71 -10.65 -0.01 1.34 16 21 C -0.11 -1.43 4.72 30.53 0.14 -1.29 16 22 C -0.12 -1.88 5.80 30.61 0.18 -1.70 16 23 C -0.12 -1.61 5.91 30.59 0.18 -1.43 16 24 C -0.12 -1.73 5.80 30.61 0.18 -1.55 16 25 C -0.12 -1.49 4.65 30.54 0.14 -1.35 16 26 O -0.37 -7.26 9.42 -148.98 -1.40 -8.66 16 27 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.41 13.07 8.49 -92.71 -0.79 12.29 16 33 H 0.41 9.04 8.49 -92.71 -0.79 8.25 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.98 8.05 -2.39 -0.02 0.96 16 38 H 0.09 0.62 7.68 -2.39 -0.02 0.60 16 39 H 0.09 0.71 7.69 -2.38 -0.02 0.69 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.04 0.94 7.76 -2.39 -0.02 0.92 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 0.93 7.76 -2.39 -0.02 0.91 16 47 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 Total: -1.00 -71.09 386.21 -0.47 -71.56 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.65 Total: 24.41 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.66 Total: 2.94 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -5.04 Total: -107.37 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.47 Total: -37.85 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.09 -0.47 -71.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359117091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.057 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds