Wall clock time and date at job start Fri Apr 10 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00357 * 2 1 4 4 H 1.48495 * 109.47088 * 84.61336 * 3 2 1 5 5 H 1.48493 * 109.47094 * 204.61657 * 3 2 1 6 6 H 1.48506 * 109.46740 * 324.61370 * 3 2 1 7 7 C 1.38819 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 22.58756 * 7 2 1 9 9 N 1.36939 * 119.99763 * 202.59164 * 7 2 1 10 10 C 1.46924 * 120.63302 * 24.91771 * 9 7 2 11 11 C 1.53620 * 108.54439 * 126.36917 * 10 9 7 12 12 C 1.53050 * 109.23836 * 54.85650 * 11 10 9 13 13 C 1.53032 * 109.53642 * 298.50818 * 12 11 10 14 14 H 1.08996 * 109.50263 * 301.41731 * 13 12 11 15 15 C 1.53002 * 109.52247 * 181.33196 * 13 12 11 16 16 N 1.46501 * 109.47092 * 175.14510 * 15 13 12 17 17 C 1.34783 * 119.99950 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99919 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00182 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47349 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.47243 * 179.97438 * 20 19 17 22 22 H 1.09001 * 110.33108 * 307.25229 * 21 20 19 23 23 C 1.54467 * 110.37127 * 184.99799 * 21 20 19 24 24 C 1.54508 * 104.06431 * 217.19052 * 23 21 20 25 25 C 1.54486 * 104.06227 * 0.02562 * 24 23 21 26 26 O 1.44422 * 104.80007 * 23.97737 * 25 24 23 27 27 C 1.46926 * 120.62747 * 205.20118 * 9 7 2 28 28 H 0.97004 * 120.00185 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58551 * 246.20736 * 10 9 7 30 30 H 1.08996 * 109.58461 * 6.62586 * 10 9 7 31 31 H 1.08993 * 109.63318 * 294.86530 * 11 10 9 32 32 H 1.08997 * 109.45818 * 174.74065 * 11 10 9 33 33 H 1.09001 * 109.45515 * 178.48847 * 12 11 10 34 34 H 1.08995 * 109.46081 * 58.53772 * 12 11 10 35 35 H 1.08998 * 109.47408 * 295.14965 * 15 13 12 36 36 H 1.09001 * 109.46992 * 55.15094 * 15 13 12 37 37 H 0.97000 * 120.00375 * 0.02562 * 16 15 13 38 38 H 1.08998 * 109.46787 * 299.99858 * 19 17 16 39 39 H 1.09004 * 109.47575 * 59.99702 * 19 17 16 40 40 H 1.08998 * 109.47077 * 299.99701 * 20 19 17 41 41 H 1.08995 * 109.46922 * 59.99970 * 20 19 17 42 42 H 1.09002 * 110.51297 * 335.83581 * 23 21 20 43 43 H 1.09005 * 110.51550 * 98.54971 * 23 21 20 44 44 H 1.09007 * 110.51345 * 118.64338 * 24 23 21 45 45 H 1.08996 * 110.51485 * 241.22105 * 24 23 21 46 46 H 1.08999 * 110.37054 * 142.81106 * 25 24 23 47 47 H 1.09002 * 110.36938 * 265.14885 * 25 24 23 48 48 H 1.09006 * 109.58759 * 353.37025 * 27 9 7 49 49 H 1.09000 * 109.58882 * 113.79529 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3839 2.1121 1.3938 5 1 3.6000 1.4099 -0.5832 6 1 1.5092 2.6171 -0.8108 7 6 2.0102 -1.2022 -0.0005 8 1 1.5323 -2.1015 -0.3602 9 7 3.3007 -1.2479 0.4550 10 6 3.7910 -0.2510 1.4165 11 6 4.3919 -0.9893 2.6222 12 6 5.4613 -1.9684 2.1322 13 6 4.8210 -3.0034 1.2044 14 1 4.0327 -3.5331 1.7392 15 6 5.8838 -4.0017 0.7412 16 7 5.2495 -5.0574 -0.0521 17 6 5.9963 -6.0537 -0.5680 18 8 7.1936 -6.0760 -0.3759 19 6 5.3439 -7.1393 -1.3845 20 6 6.4068 -8.1377 -1.8476 21 6 5.7442 -9.2403 -2.6761 22 1 4.9130 -9.6804 -2.1252 23 6 6.7771 -10.3266 -3.0495 24 6 6.3798 -10.7456 -4.4826 25 6 5.1542 -9.8624 -4.8058 26 8 5.2896 -8.7131 -3.9418 27 6 4.2233 -2.2912 -0.0131 28 1 -0.4850 0.8401 -0.0004 29 1 4.5552 0.3667 0.9447 30 1 2.9631 0.3767 1.7461 31 1 3.6077 -1.5380 3.1437 32 1 4.8440 -0.2669 3.3019 33 1 5.9089 -2.4749 2.9873 34 1 6.2326 -1.4220 1.5896 35 1 6.6261 -3.4857 0.1321 36 1 6.3708 -4.4435 1.6106 37 1 4.2919 -5.0394 -0.2061 38 1 4.6012 -7.6550 -0.7758 39 1 4.8575 -6.6974 -2.2542 40 1 7.1492 -7.6217 -2.4565 41 1 6.8934 -8.5797 -0.9783 42 1 7.7860 -9.9143 -3.0379 43 1 6.7022 -11.1748 -2.3690 44 1 7.1924 -10.5405 -5.1796 45 1 6.1109 -11.8015 -4.5111 46 1 5.1730 -9.5554 -5.8515 47 1 4.2313 -10.3980 -4.5832 48 1 3.6807 -3.0101 -0.6271 49 1 5.0221 -1.8365 -0.5991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359714138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:32 Heat of formation + Delta-G solvation = -82.368874 kcal Electronic energy + Delta-G solvation = -25878.383049 eV Core-core repulsion = 22226.068819 eV Total energy + Delta-G solvation = -3652.314230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.00300 -39.41511 -38.05872 -34.97315 -33.72923 -33.00694 -32.34864 -30.97649 -30.72410 -28.86572 -26.06246 -25.28343 -24.14859 -22.17578 -21.91160 -21.38133 -21.13898 -20.21424 -19.29057 -17.16448 -16.73388 -16.66922 -16.09170 -15.80683 -15.66579 -15.42752 -15.31059 -14.54029 -14.05336 -13.90492 -13.67172 -13.44288 -13.34748 -13.18188 -13.07120 -12.56847 -12.40425 -12.12331 -12.11105 -11.91384 -11.71685 -11.62183 -11.49697 -11.23443 -11.06439 -10.94615 -10.81507 -10.59167 -10.51834 -10.15429 -10.03736 -9.95473 -9.70376 -9.66477 -9.41608 -8.93055 -8.62111 -7.02024 -5.96774 -3.29656 2.73252 3.28757 3.31805 3.48625 3.51520 3.60266 4.26471 4.36990 4.52268 4.58774 4.70776 4.72355 4.82889 4.88590 5.03226 5.14230 5.17082 5.23656 5.27744 5.31001 5.33752 5.38249 5.42890 5.47768 5.55927 5.62270 5.62800 5.71561 5.80204 5.84061 5.87138 6.03217 6.05276 6.10473 6.13374 6.29935 6.37867 6.50045 6.56855 6.57898 6.58845 6.69001 6.71636 6.96689 7.60896 7.91950 8.29549 8.31175 8.91819 9.70845 10.08193 11.18980 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002546 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.104918 B =10996.708880 C =12104.954814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 0.880 3.120 4 H -0.289 1.289 5 H -0.271 1.271 6 H -0.304 1.304 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.078 0.922 15 C 0.127 3.873 16 N -0.726 5.726 17 C 0.512 3.488 18 O -0.551 6.551 19 C -0.141 4.141 20 C -0.096 4.096 21 C 0.072 3.928 22 H 0.070 0.930 23 C -0.152 4.152 24 C -0.156 4.156 25 C 0.044 3.956 26 O -0.369 6.369 27 C 0.156 3.844 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 -19.531 -3.146 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.711 3.289 4 H -0.217 1.217 5 H -0.196 1.196 6 H -0.232 1.232 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.329 5.329 10 C -0.001 4.001 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.140 4.140 14 H 0.096 0.904 15 C 0.003 3.997 16 N -0.378 5.378 17 C 0.298 3.702 18 O -0.429 6.429 19 C -0.181 4.181 20 C -0.133 4.133 21 C 0.015 3.985 22 H 0.088 0.912 23 C -0.189 4.189 24 C -0.194 4.194 25 C -0.033 4.033 26 O -0.288 6.288 27 C 0.030 3.970 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 12.931 -19.215 -3.084 23.365 hybrid contribution -0.103 0.823 -0.037 0.830 sum 12.828 -18.392 -3.121 22.640 Atomic orbital electron populations 1.69855 1.05725 1.26554 1.52824 1.25214 0.95198 0.97561 0.99680 0.86981 0.80224 0.84838 0.76851 1.21732 1.19558 1.23202 1.18909 0.85937 0.95040 1.38939 0.89641 1.44363 1.09865 1.31145 1.47528 1.21420 0.97378 0.91890 0.89410 1.22068 0.98134 0.98399 0.98729 1.21346 0.97812 0.96657 0.98082 1.21939 0.97097 0.95684 0.99234 0.90390 1.21412 0.95703 0.87814 0.94750 1.46122 1.12015 1.25736 1.53880 1.20693 0.87285 0.82700 0.79489 1.90674 1.15048 1.77044 1.60183 1.21660 0.99690 0.95978 1.00763 1.21391 0.97462 0.95012 0.99469 1.23100 0.95518 0.93688 0.86225 0.91180 1.22987 1.00551 0.98899 0.96508 1.22946 0.98963 1.00369 0.97151 1.23388 0.97056 0.87184 0.95703 1.89185 1.87857 1.29306 1.22473 1.20924 0.92482 0.91029 0.92564 0.92789 0.95703 0.91068 0.91692 0.92725 0.92806 0.92359 0.91680 0.91962 0.76059 0.89001 0.88086 0.90222 0.89908 0.90323 0.90514 0.90715 0.90657 0.89141 0.92310 0.92155 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 2 C 0.02 0.64 5.21 -17.43 -0.09 0.55 16 3 Si 0.88 22.36 24.36 -169.99 -4.14 18.22 16 4 H -0.29 -7.11 6.68 56.52 0.38 -6.73 16 5 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 6 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 7 C -0.26 -7.14 10.05 -15.06 -0.15 -7.29 16 8 H 0.09 2.47 8.04 -52.49 -0.42 2.05 16 9 N -0.61 -14.09 2.79 -172.05 -0.48 -14.57 16 10 C 0.12 2.69 4.23 -3.49 -0.01 2.68 16 11 C -0.13 -2.32 6.10 -26.38 -0.16 -2.48 16 12 C -0.10 -1.52 5.17 -26.69 -0.14 -1.65 16 13 C -0.12 -1.83 2.37 -90.50 -0.21 -2.04 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.13 1.76 5.07 -4.04 -0.02 1.74 16 16 N -0.73 -9.29 5.33 -60.29 -0.32 -9.61 16 17 C 0.51 6.80 7.83 -10.99 -0.09 6.71 16 18 O -0.55 -9.19 15.98 5.56 0.09 -9.10 16 19 C -0.14 -1.42 5.64 -27.89 -0.16 -1.58 16 20 C -0.10 -0.94 4.13 -26.73 -0.11 -1.05 16 21 C 0.07 0.62 3.25 -25.96 -0.08 0.53 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 C -0.15 -1.05 6.63 -25.17 -0.17 -1.22 16 24 C -0.16 -0.97 7.09 -25.16 -0.18 -1.15 16 25 C 0.04 0.33 7.63 37.94 0.29 0.61 16 26 O -0.37 -3.87 11.13 -35.23 -0.39 -4.26 16 27 C 0.16 2.94 5.60 -3.71 -0.02 2.92 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.03 0.54 7.09 -51.93 -0.37 0.17 16 30 H 0.07 1.70 4.36 -51.93 -0.23 1.47 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 4.66 7.70 -40.82 -0.31 4.35 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.03 8.01 -51.93 -0.42 0.61 16 40 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 1.11 7.12 -51.93 -0.37 0.74 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -32.90 376.72 -9.00 -41.90 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.90 Total: 1.26 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.31 Total: -2.72 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.03 Total: -50.98 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.30 Total: -13.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.90 -9.00 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359714138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.465 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds