Wall clock time and date at job start Fri Apr 10 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00357 * 2 1 4 4 H 1.48495 * 109.47088 * 84.61336 * 3 2 1 5 5 H 1.48493 * 109.47094 * 204.61657 * 3 2 1 6 6 H 1.48506 * 109.46740 * 324.61370 * 3 2 1 7 7 C 1.38819 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00078 * 22.58756 * 7 2 1 9 9 N 1.36939 * 119.99763 * 202.59164 * 7 2 1 10 10 C 1.46924 * 120.63302 * 24.91771 * 9 7 2 11 11 C 1.53620 * 108.54439 * 126.36917 * 10 9 7 12 12 C 1.53050 * 109.23836 * 54.85650 * 11 10 9 13 13 C 1.53032 * 109.53642 * 298.50818 * 12 11 10 14 14 H 1.08996 * 109.50263 * 301.41731 * 13 12 11 15 15 C 1.53002 * 109.52247 * 181.33196 * 13 12 11 16 16 N 1.46501 * 109.47092 * 175.14510 * 15 13 12 17 17 C 1.34783 * 119.99950 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99919 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00182 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47349 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.47243 * 179.97438 * 20 19 17 22 22 H 1.09001 * 110.33108 * 307.25229 * 21 20 19 23 23 C 1.54467 * 110.37127 * 184.99799 * 21 20 19 24 24 C 1.54508 * 104.06431 * 217.19052 * 23 21 20 25 25 C 1.54486 * 104.06227 * 0.02562 * 24 23 21 26 26 O 1.44422 * 104.80007 * 23.97737 * 25 24 23 27 27 C 1.46926 * 120.62747 * 205.20118 * 9 7 2 28 28 H 0.97004 * 120.00185 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58551 * 246.20736 * 10 9 7 30 30 H 1.08996 * 109.58461 * 6.62586 * 10 9 7 31 31 H 1.08993 * 109.63318 * 294.86530 * 11 10 9 32 32 H 1.08997 * 109.45818 * 174.74065 * 11 10 9 33 33 H 1.09001 * 109.45515 * 178.48847 * 12 11 10 34 34 H 1.08995 * 109.46081 * 58.53772 * 12 11 10 35 35 H 1.08998 * 109.47408 * 295.14965 * 15 13 12 36 36 H 1.09001 * 109.46992 * 55.15094 * 15 13 12 37 37 H 0.97000 * 120.00375 * 0.02562 * 16 15 13 38 38 H 1.08998 * 109.46787 * 299.99858 * 19 17 16 39 39 H 1.09004 * 109.47575 * 59.99702 * 19 17 16 40 40 H 1.08998 * 109.47077 * 299.99701 * 20 19 17 41 41 H 1.08995 * 109.46922 * 59.99970 * 20 19 17 42 42 H 1.09002 * 110.51297 * 335.83581 * 23 21 20 43 43 H 1.09005 * 110.51550 * 98.54971 * 23 21 20 44 44 H 1.09007 * 110.51345 * 118.64338 * 24 23 21 45 45 H 1.08996 * 110.51485 * 241.22105 * 24 23 21 46 46 H 1.08999 * 110.37054 * 142.81106 * 25 24 23 47 47 H 1.09002 * 110.36938 * 265.14885 * 25 24 23 48 48 H 1.09006 * 109.58759 * 353.37025 * 27 9 7 49 49 H 1.09000 * 109.58882 * 113.79529 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3839 2.1121 1.3938 5 1 3.6000 1.4099 -0.5832 6 1 1.5092 2.6171 -0.8108 7 6 2.0102 -1.2022 -0.0005 8 1 1.5323 -2.1015 -0.3602 9 7 3.3007 -1.2479 0.4550 10 6 3.7910 -0.2510 1.4165 11 6 4.3919 -0.9893 2.6222 12 6 5.4613 -1.9684 2.1322 13 6 4.8210 -3.0034 1.2044 14 1 4.0327 -3.5331 1.7392 15 6 5.8838 -4.0017 0.7412 16 7 5.2495 -5.0574 -0.0521 17 6 5.9963 -6.0537 -0.5680 18 8 7.1936 -6.0760 -0.3759 19 6 5.3439 -7.1393 -1.3845 20 6 6.4068 -8.1377 -1.8476 21 6 5.7442 -9.2403 -2.6761 22 1 4.9130 -9.6804 -2.1252 23 6 6.7771 -10.3266 -3.0495 24 6 6.3798 -10.7456 -4.4826 25 6 5.1542 -9.8624 -4.8058 26 8 5.2896 -8.7131 -3.9418 27 6 4.2233 -2.2912 -0.0131 28 1 -0.4850 0.8401 -0.0004 29 1 4.5552 0.3667 0.9447 30 1 2.9631 0.3767 1.7461 31 1 3.6077 -1.5380 3.1437 32 1 4.8440 -0.2669 3.3019 33 1 5.9089 -2.4749 2.9873 34 1 6.2326 -1.4220 1.5896 35 1 6.6261 -3.4857 0.1321 36 1 6.3708 -4.4435 1.6106 37 1 4.2919 -5.0394 -0.2061 38 1 4.6012 -7.6550 -0.7758 39 1 4.8575 -6.6974 -2.2542 40 1 7.1492 -7.6217 -2.4565 41 1 6.8934 -8.5797 -0.9783 42 1 7.7860 -9.9143 -3.0379 43 1 6.7022 -11.1748 -2.3690 44 1 7.1924 -10.5405 -5.1796 45 1 6.1109 -11.8015 -4.5111 46 1 5.1730 -9.5554 -5.8515 47 1 4.2313 -10.3980 -4.5832 48 1 3.6807 -3.0101 -0.6271 49 1 5.0221 -1.8365 -0.5991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359714138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:30 Heat of formation + Delta-G solvation = -104.588038 kcal Electronic energy + Delta-G solvation = -25879.346544 eV Core-core repulsion = 22226.068819 eV Total energy + Delta-G solvation = -3653.277725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.95815 -40.23263 -39.50078 -36.34924 -34.70144 -34.52968 -32.95883 -32.80732 -32.12546 -29.64345 -27.43201 -26.92520 -25.02144 -23.67988 -23.03519 -22.44003 -21.81134 -21.35788 -20.63588 -18.76229 -18.01281 -17.43961 -17.26431 -16.89856 -16.80360 -16.44434 -16.36295 -15.85017 -15.54442 -15.12247 -14.88914 -14.75222 -14.55900 -14.38434 -14.05649 -13.99948 -13.68445 -13.50574 -13.27772 -13.18132 -12.76008 -12.58444 -12.55643 -12.31654 -12.16275 -12.12027 -11.89038 -11.79431 -11.70907 -11.58891 -11.46014 -11.33505 -11.26856 -10.80039 -10.68003 -10.65556 -10.03617 -8.96027 -8.16557 -5.44594 1.28654 1.40750 1.48912 1.68157 2.27799 2.41282 3.00252 3.04088 3.32000 3.63880 3.76319 3.85849 3.89625 3.96301 4.02051 4.07091 4.12101 4.19222 4.24762 4.37568 4.41766 4.50737 4.53735 4.60017 4.64217 4.75882 4.77627 4.79429 4.83678 4.84758 4.87558 4.98232 4.99567 5.07746 5.09004 5.11962 5.16471 5.18996 5.25957 5.28856 5.29852 5.49662 5.58708 5.85263 5.97975 6.12293 6.57449 6.91329 7.26822 7.63283 8.03534 9.02948 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002546 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.104918 B =10996.708880 C =12104.954814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.036 4.036 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.313 1.313 7 C -0.245 4.245 8 H 0.059 0.941 9 N -0.620 5.620 10 C 0.115 3.885 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.103 4.103 14 H 0.074 0.926 15 C 0.136 3.864 16 N -0.723 5.723 17 C 0.510 3.490 18 O -0.587 6.587 19 C -0.134 4.134 20 C -0.092 4.092 21 C 0.071 3.929 22 H 0.084 0.916 23 C -0.152 4.152 24 C -0.153 4.153 25 C 0.036 3.964 26 O -0.399 6.399 27 C 0.152 3.848 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.023 -20.717 -2.311 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.231 4.231 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.243 1.243 7 C -0.374 4.374 8 H 0.077 0.923 9 N -0.344 5.344 10 C -0.009 4.009 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.123 4.123 14 H 0.093 0.907 15 C 0.012 3.988 16 N -0.375 5.375 17 C 0.299 3.701 18 O -0.468 6.468 19 C -0.174 4.174 20 C -0.130 4.130 21 C 0.014 3.986 22 H 0.102 0.898 23 C -0.190 4.190 24 C -0.191 4.191 25 C -0.041 4.041 26 O -0.319 6.319 27 C 0.027 3.973 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 14.699 -20.416 -2.238 25.256 hybrid contribution -0.633 1.113 -0.323 1.321 sum 14.066 -19.303 -2.561 24.021 Atomic orbital electron populations 1.69972 1.07267 1.27072 1.55787 1.25804 0.95776 1.00696 1.00830 0.85985 0.78840 0.80842 0.77215 1.20364 1.18889 1.24253 1.18910 0.87588 0.93920 1.36993 0.92337 1.44514 1.09142 1.32463 1.48295 1.21514 0.96708 0.91920 0.90792 1.21976 0.98509 0.99036 0.97025 1.21368 0.97126 0.96123 0.99059 1.21726 0.97265 0.95790 0.97552 0.90747 1.21260 0.94886 0.87604 0.95059 1.46134 1.12371 1.25438 1.53552 1.21203 0.86843 0.82995 0.79086 1.90658 1.16615 1.77892 1.61586 1.21675 1.00015 0.95178 1.00510 1.21339 0.96978 0.95234 0.99403 1.23168 0.96302 0.93445 0.85683 0.89784 1.23008 0.99650 0.98937 0.97389 1.22948 0.98380 1.01175 0.96572 1.23578 0.98142 0.86773 0.95578 1.89148 1.88134 1.31113 1.23538 1.21095 0.91750 0.90146 0.94283 0.93052 0.95206 0.93578 0.92579 0.90014 0.89764 0.91652 0.92353 0.91001 0.75299 0.86477 0.88136 0.92500 0.89672 0.91079 0.88798 0.90779 0.88800 0.88768 0.91236 0.92350 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.97 21.65 0.30 -59.40 16 2 C -0.04 -2.12 5.21 84.86 0.44 -1.68 16 3 Si 0.94 46.78 24.36 68.60 1.67 48.45 16 4 H -0.28 -13.02 6.68 99.48 0.66 -12.35 16 5 H -0.26 -12.66 6.54 99.48 0.65 -12.01 16 6 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 7 C -0.24 -13.61 10.05 84.03 0.84 -12.76 16 8 H 0.06 3.50 8.04 -2.91 -0.02 3.47 16 9 N -0.62 -28.40 2.79 -698.25 -1.95 -30.35 16 10 C 0.12 4.80 4.23 86.51 0.37 5.16 16 11 C -0.13 -4.01 6.10 30.82 0.19 -3.82 16 12 C -0.10 -2.62 5.17 30.62 0.16 -2.46 16 13 C -0.10 -2.92 2.37 -10.72 -0.03 -2.95 16 14 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.14 3.46 5.07 86.38 0.44 3.90 16 16 N -0.72 -17.38 5.33 -463.05 -2.47 -19.85 16 17 C 0.51 12.97 7.83 87.65 0.69 13.66 16 18 O -0.59 -19.11 15.98 -3.03 -0.05 -19.16 16 19 C -0.13 -2.54 5.64 29.85 0.17 -2.37 16 20 C -0.09 -1.73 4.13 30.60 0.13 -1.60 16 21 C 0.07 1.12 3.25 31.09 0.10 1.22 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 C -0.15 -1.87 6.63 31.61 0.21 -1.66 16 24 C -0.15 -1.64 7.09 31.61 0.22 -1.42 16 25 C 0.04 0.49 7.63 72.49 0.55 1.04 16 26 O -0.40 -8.06 11.13 -148.98 -1.66 -9.72 16 27 C 0.15 5.55 5.60 86.36 0.48 6.03 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.03 1.22 7.09 -2.39 -0.02 1.20 16 30 H 0.05 2.15 4.36 -2.39 -0.01 2.13 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 8.89 7.70 -92.71 -0.71 8.17 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.96 8.01 -2.38 -0.02 1.94 16 40 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 43 H 0.09 0.82 8.14 -2.38 -0.02 0.81 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.06 2.11 7.12 -2.38 -0.02 2.09 16 49 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.02 376.72 0.91 -71.11 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.10 Total: 18.64 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 4.96 Total: 0.28 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.12 Total: -109.60 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.71 Total: -28.88 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Total: -72.02 0.91 -71.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359714138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.479 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds