Wall clock time and date at job start Fri Apr 10 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48506 * 109.46964 * 240.00116 * 3 2 1 5 5 H 1.48502 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47113 * 120.00228 * 3 2 1 7 7 C 1.38813 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99887 * 163.07666 * 7 2 1 9 9 N 1.36942 * 120.00096 * 343.07001 * 7 2 1 10 10 C 1.46923 * 120.62815 * 331.85124 * 9 7 2 11 11 C 1.53199 * 108.77046 * 233.60540 * 10 9 7 12 12 C 1.53043 * 109.30920 * 305.36413 * 11 10 9 13 13 C 1.53036 * 109.53952 * 61.36840 * 12 11 10 14 14 H 1.08994 * 109.49734 * 58.61623 * 13 12 11 15 15 C 1.53003 * 109.49542 * 178.68266 * 13 12 11 16 16 N 1.46504 * 109.46676 * 184.93398 * 15 13 12 17 17 C 1.34779 * 119.99946 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99455 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46781 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46886 * 179.97438 * 20 19 17 22 22 H 1.09003 * 110.32753 * 52.75255 * 21 20 19 23 23 C 1.54481 * 110.37156 * 174.99791 * 21 20 19 24 24 C 1.54511 * 104.06029 * 142.81280 * 23 21 20 25 25 C 1.54479 * 104.18494 * 359.93213 * 24 23 21 26 26 O 1.44424 * 110.37377 * 290.38364 * 21 20 19 27 27 C 1.46933 * 120.60446 * 151.85995 * 9 7 2 28 28 H 0.96995 * 120.00248 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.59164 * 113.81918 * 10 9 7 30 30 H 1.08998 * 109.70617 * 353.45305 * 10 9 7 31 31 H 1.09001 * 109.50031 * 185.41473 * 11 10 9 32 32 H 1.08993 * 109.52419 * 65.32953 * 11 10 9 33 33 H 1.08998 * 109.46207 * 301.34166 * 12 11 10 34 34 H 1.09006 * 109.45939 * 181.38570 * 12 11 10 35 35 H 1.08992 * 109.47441 * 64.93537 * 15 13 12 36 36 H 1.08996 * 109.46790 * 304.92727 * 15 13 12 37 37 H 0.97003 * 120.00161 * 359.97438 * 16 15 13 38 38 H 1.08999 * 109.47332 * 60.00188 * 19 17 16 39 39 H 1.09004 * 109.47012 * 299.99566 * 19 17 16 40 40 H 1.08999 * 109.47077 * 59.99979 * 20 19 17 41 41 H 1.09000 * 109.47424 * 299.99629 * 20 19 17 42 42 H 1.08996 * 110.51265 * 24.16954 * 23 21 20 43 43 H 1.09003 * 110.51263 * 261.45496 * 23 21 20 44 44 H 1.09005 * 110.50895 * 118.64444 * 24 23 21 45 45 H 1.08994 * 110.50709 * 241.21439 * 24 23 21 46 46 H 1.09000 * 110.37255 * 94.92176 * 25 24 23 47 47 H 1.08994 * 110.37079 * 217.26064 * 25 24 23 48 48 H 1.09003 * 109.61097 * 6.63199 * 27 9 7 49 49 H 1.08993 * 109.56618 * 246.20139 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3701 -2.3626 0.3443 10 6 0.2261 -2.3409 1.2660 11 6 0.4978 -3.3206 2.4120 12 6 0.8126 -4.7019 1.8331 13 6 2.0679 -4.6177 0.9619 14 1 2.9029 -4.2546 1.5610 15 6 2.4006 -6.0055 0.4102 16 7 3.6659 -5.9479 -0.3260 17 6 4.1610 -7.0606 -0.9033 18 8 3.5592 -8.1097 -0.8128 19 6 5.4628 -7.0015 -1.6601 20 6 5.7954 -8.3892 -2.2119 21 6 7.1168 -8.3290 -2.9808 22 1 7.8957 -7.8849 -2.3609 23 6 7.5363 -9.7429 -3.4405 24 6 8.1621 -9.5141 -4.8346 25 6 8.0464 -7.9896 -5.0558 26 8 6.9536 -7.5769 -4.2028 27 6 1.8148 -3.6526 -0.2006 28 1 -0.4850 0.8400 0.0004 29 1 -0.6770 -2.6414 0.7347 30 1 0.0966 -1.3359 1.6675 31 1 -0.3828 -3.3861 3.0512 32 1 1.3472 -2.9694 2.9978 33 1 -0.0275 -5.0420 1.2277 34 1 0.9822 -5.4067 2.6471 35 1 1.6048 -6.3305 -0.2600 36 1 2.4921 -6.7120 1.2351 37 1 4.1474 -5.1088 -0.3980 38 1 6.2584 -6.6764 -0.9897 39 1 5.3716 -6.2951 -2.4852 40 1 4.9997 -8.7139 -2.8824 41 1 5.8865 -9.0960 -1.3870 42 1 6.6656 -10.3944 -3.5150 43 1 8.2725 -10.1644 -2.7559 44 1 9.2076 -9.8225 -4.8391 45 1 7.6022 -10.0544 -5.5978 46 1 8.9690 -7.4918 -4.7572 47 1 7.8185 -7.7740 -6.0996 48 1 2.7359 -3.5128 -0.7665 49 1 1.0416 -4.0598 -0.8519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359714140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:37 Heat of formation + Delta-G solvation = -89.091088 kcal Electronic energy + Delta-G solvation = -25814.767736 eV Core-core repulsion = 22162.162009 eV Total energy + Delta-G solvation = -3652.605727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.96352 -39.36040 -37.77904 -34.81228 -33.70524 -32.96444 -32.33908 -30.51190 -30.40859 -28.77982 -25.73850 -25.26705 -24.01545 -22.18087 -21.92432 -21.19311 -20.87513 -20.16053 -19.01087 -17.12948 -16.71271 -16.61429 -16.07200 -15.75305 -15.59606 -15.32512 -14.81248 -14.42205 -14.04502 -13.83810 -13.56792 -13.43445 -13.13674 -13.08888 -12.76572 -12.32290 -12.17475 -12.13282 -12.10865 -11.89915 -11.69234 -11.29955 -11.20123 -11.05228 -11.00408 -10.93979 -10.70106 -10.49858 -10.24023 -10.17629 -10.03357 -9.94659 -9.78887 -9.50331 -9.41966 -8.86140 -8.46581 -6.67284 -5.79288 -3.22435 2.77498 3.34128 3.37365 3.43396 3.44118 3.59806 4.27314 4.37886 4.47817 4.58909 4.71491 4.75811 4.89138 5.04033 5.10801 5.18445 5.29771 5.31819 5.34597 5.38686 5.45290 5.47566 5.48840 5.57377 5.62405 5.63993 5.72622 5.83952 5.88690 5.98477 6.02209 6.07176 6.25471 6.34499 6.38708 6.56947 6.58812 6.60016 6.71434 6.79002 6.86569 6.97745 7.39829 7.65780 7.67736 7.77918 8.35951 8.44313 9.20514 9.83975 10.41048 11.29035 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.002603 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.138140 B =10755.971084 C =12253.275017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.127 3.873 16 N -0.725 5.725 17 C 0.511 3.489 18 O -0.551 6.551 19 C -0.141 4.141 20 C -0.096 4.096 21 C 0.073 3.927 22 H 0.070 0.930 23 C -0.152 4.152 24 C -0.156 4.156 25 C 0.044 3.956 26 O -0.370 6.370 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.017 0.983 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.403 0.597 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.607 -17.055 -3.760 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.376 5.376 17 C 0.297 3.703 18 O -0.430 6.430 19 C -0.181 4.181 20 C -0.134 4.134 21 C 0.015 3.985 22 H 0.088 0.912 23 C -0.189 4.189 24 C -0.194 4.194 25 C -0.033 4.033 26 O -0.289 6.289 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.238 0.762 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.868 -17.474 -3.756 22.623 hybrid contribution 0.822 1.185 -0.011 1.442 sum 14.690 -16.290 -3.767 22.256 Atomic orbital electron populations 1.70025 1.05279 1.25631 1.53666 1.25050 0.95281 0.98423 1.00847 0.86372 0.78918 0.83380 0.78101 1.20872 1.21639 1.21049 1.19119 0.92471 0.84826 1.42008 0.91797 1.44033 1.35892 1.01351 1.50116 1.20788 0.88555 0.98262 0.88041 1.22174 1.00077 0.96005 0.99832 1.21344 0.96791 0.97705 0.97958 1.21948 0.98786 0.93689 0.99375 0.90930 1.21441 0.85029 0.97857 0.95384 1.46125 1.24874 1.11898 1.54725 1.20684 0.87055 0.83594 0.78937 1.90675 1.61401 1.29995 1.60899 1.21657 0.95351 1.00152 1.00897 1.21393 0.95953 0.96302 0.99702 1.23091 0.97672 0.90534 0.87193 0.91240 1.22989 1.01512 0.97876 0.96556 1.22941 1.01614 0.97179 0.97690 1.23424 0.90580 0.93403 0.95910 1.89207 1.48351 1.64681 1.26652 1.20897 0.97482 0.86791 0.92090 0.93563 0.96468 0.89591 0.93205 0.92776 0.92495 0.93480 0.91701 0.92131 0.76189 0.89082 0.88144 0.90201 0.89889 0.90297 0.90522 0.90691 0.90695 0.92320 0.89118 0.93123 0.96377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 8 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -14.58 2.99 -172.31 -0.52 -15.09 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.10 -1.66 5.17 -26.69 -0.14 -1.79 16 13 C -0.12 -1.94 2.37 -90.50 -0.21 -2.16 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.13 1.89 5.07 -4.04 -0.02 1.86 16 16 N -0.72 -9.76 5.33 -60.29 -0.32 -10.08 16 17 C 0.51 7.05 7.83 -10.99 -0.09 6.96 16 18 O -0.55 -9.51 15.98 5.55 0.09 -9.42 16 19 C -0.14 -1.46 5.64 -27.88 -0.16 -1.62 16 20 C -0.10 -0.96 4.13 -26.73 -0.11 -1.07 16 21 C 0.07 0.63 3.25 -25.95 -0.08 0.55 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 C -0.15 -1.07 6.63 -25.16 -0.17 -1.24 16 24 C -0.16 -0.99 7.08 -25.16 -0.18 -1.16 16 25 C 0.04 0.33 7.65 37.93 0.29 0.62 16 26 O -0.37 -3.92 11.13 -35.23 -0.39 -4.31 16 27 C 0.15 3.12 5.60 -3.71 -0.02 3.10 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.40 4.86 7.70 -40.82 -0.31 4.55 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.05 8.01 -51.93 -0.42 0.63 16 40 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.98 7.14 -51.93 -0.37 0.61 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -31.87 383.29 -10.05 -41.92 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.98 Total: 2.05 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.30 Total: -1.81 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.22 Total: -50.65 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.30 Total: -13.73 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.87 -10.05 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359714140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.173 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds