Wall clock time and date at job start Fri Apr 10 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48506 * 109.46964 * 240.00116 * 3 2 1 5 5 H 1.48502 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47113 * 120.00228 * 3 2 1 7 7 C 1.38813 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99887 * 163.07666 * 7 2 1 9 9 N 1.36942 * 120.00096 * 343.07001 * 7 2 1 10 10 C 1.46923 * 120.62815 * 331.85124 * 9 7 2 11 11 C 1.53199 * 108.77046 * 233.60540 * 10 9 7 12 12 C 1.53043 * 109.30920 * 305.36413 * 11 10 9 13 13 C 1.53036 * 109.53952 * 61.36840 * 12 11 10 14 14 H 1.08994 * 109.49734 * 58.61623 * 13 12 11 15 15 C 1.53003 * 109.49542 * 178.68266 * 13 12 11 16 16 N 1.46504 * 109.46676 * 184.93398 * 15 13 12 17 17 C 1.34779 * 119.99946 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99455 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46781 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46886 * 179.97438 * 20 19 17 22 22 H 1.09003 * 110.32753 * 52.75255 * 21 20 19 23 23 C 1.54481 * 110.37156 * 174.99791 * 21 20 19 24 24 C 1.54511 * 104.06029 * 142.81280 * 23 21 20 25 25 C 1.54479 * 104.18494 * 359.93213 * 24 23 21 26 26 O 1.44424 * 110.37377 * 290.38364 * 21 20 19 27 27 C 1.46933 * 120.60446 * 151.85995 * 9 7 2 28 28 H 0.96995 * 120.00248 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.59164 * 113.81918 * 10 9 7 30 30 H 1.08998 * 109.70617 * 353.45305 * 10 9 7 31 31 H 1.09001 * 109.50031 * 185.41473 * 11 10 9 32 32 H 1.08993 * 109.52419 * 65.32953 * 11 10 9 33 33 H 1.08998 * 109.46207 * 301.34166 * 12 11 10 34 34 H 1.09006 * 109.45939 * 181.38570 * 12 11 10 35 35 H 1.08992 * 109.47441 * 64.93537 * 15 13 12 36 36 H 1.08996 * 109.46790 * 304.92727 * 15 13 12 37 37 H 0.97003 * 120.00161 * 359.97438 * 16 15 13 38 38 H 1.08999 * 109.47332 * 60.00188 * 19 17 16 39 39 H 1.09004 * 109.47012 * 299.99566 * 19 17 16 40 40 H 1.08999 * 109.47077 * 59.99979 * 20 19 17 41 41 H 1.09000 * 109.47424 * 299.99629 * 20 19 17 42 42 H 1.08996 * 110.51265 * 24.16954 * 23 21 20 43 43 H 1.09003 * 110.51263 * 261.45496 * 23 21 20 44 44 H 1.09005 * 110.50895 * 118.64444 * 24 23 21 45 45 H 1.08994 * 110.50709 * 241.21439 * 24 23 21 46 46 H 1.09000 * 110.37255 * 94.92176 * 25 24 23 47 47 H 1.08994 * 110.37079 * 217.26064 * 25 24 23 48 48 H 1.09003 * 109.61097 * 6.63199 * 27 9 7 49 49 H 1.08993 * 109.56618 * 246.20139 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3701 -2.3626 0.3443 10 6 0.2261 -2.3409 1.2660 11 6 0.4978 -3.3206 2.4120 12 6 0.8126 -4.7019 1.8331 13 6 2.0679 -4.6177 0.9619 14 1 2.9029 -4.2546 1.5610 15 6 2.4006 -6.0055 0.4102 16 7 3.6659 -5.9479 -0.3260 17 6 4.1610 -7.0606 -0.9033 18 8 3.5592 -8.1097 -0.8128 19 6 5.4628 -7.0015 -1.6601 20 6 5.7954 -8.3892 -2.2119 21 6 7.1168 -8.3290 -2.9808 22 1 7.8957 -7.8849 -2.3609 23 6 7.5363 -9.7429 -3.4405 24 6 8.1621 -9.5141 -4.8346 25 6 8.0464 -7.9896 -5.0558 26 8 6.9536 -7.5769 -4.2028 27 6 1.8148 -3.6526 -0.2006 28 1 -0.4850 0.8400 0.0004 29 1 -0.6770 -2.6414 0.7347 30 1 0.0966 -1.3359 1.6675 31 1 -0.3828 -3.3861 3.0512 32 1 1.3472 -2.9694 2.9978 33 1 -0.0275 -5.0420 1.2277 34 1 0.9822 -5.4067 2.6471 35 1 1.6048 -6.3305 -0.2600 36 1 2.4921 -6.7120 1.2351 37 1 4.1474 -5.1088 -0.3980 38 1 6.2584 -6.6764 -0.9897 39 1 5.3716 -6.2951 -2.4852 40 1 4.9997 -8.7139 -2.8824 41 1 5.8865 -9.0960 -1.3870 42 1 6.6656 -10.3944 -3.5150 43 1 8.2725 -10.1644 -2.7559 44 1 9.2076 -9.8225 -4.8391 45 1 7.6022 -10.0544 -5.5978 46 1 8.9690 -7.4918 -4.7572 47 1 7.8185 -7.7740 -6.0996 48 1 2.7359 -3.5128 -0.7665 49 1 1.0416 -4.0598 -0.8519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359714140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:36 Heat of formation + Delta-G solvation = -109.029025 kcal Electronic energy + Delta-G solvation = -25815.632310 eV Core-core repulsion = 22162.162009 eV Total energy + Delta-G solvation = -3653.470301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94009 -40.19552 -39.31848 -36.26599 -34.66929 -34.51116 -32.93463 -32.30266 -31.95150 -29.58581 -27.27319 -26.86933 -24.93541 -23.81571 -22.78623 -22.29915 -21.80461 -21.33434 -20.51114 -18.69200 -17.98182 -17.42721 -16.89696 -16.88363 -16.67685 -16.43977 -16.26737 -15.80845 -15.50061 -15.04955 -14.75196 -14.57539 -14.49302 -14.21667 -14.04366 -13.76799 -13.65819 -13.40830 -13.01625 -12.84730 -12.75818 -12.57651 -12.47601 -12.32185 -12.29278 -11.97782 -11.89012 -11.82366 -11.79087 -11.57895 -11.45887 -11.34221 -11.10560 -10.78316 -10.67507 -10.52183 -10.03277 -8.67372 -7.86234 -5.32482 1.47901 1.50151 1.56836 1.68642 2.28125 2.51882 2.99679 3.28428 3.59504 3.65122 3.76676 3.89440 3.99800 4.01502 4.06641 4.07355 4.13140 4.19714 4.40220 4.42496 4.48849 4.58205 4.58832 4.65104 4.75748 4.77014 4.80441 4.86784 4.88658 4.91957 4.99790 5.01520 5.09299 5.10547 5.12341 5.19264 5.23800 5.30069 5.33782 5.40352 5.51856 5.57751 5.67127 5.78380 5.98081 6.39463 6.59071 7.15431 7.27861 7.86685 8.39000 9.20000 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.002603 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.138140 B =10755.971084 C =12253.275017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.721 5.721 17 C 0.509 3.491 18 O -0.588 6.588 19 C -0.133 4.133 20 C -0.092 4.092 21 C 0.072 3.928 22 H 0.086 0.914 23 C -0.152 4.152 24 C -0.153 4.153 25 C 0.036 3.964 26 O -0.400 6.400 27 C 0.153 3.847 28 H 0.249 0.751 29 H -0.009 1.009 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.057 0.943 49 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.156 -18.016 -3.114 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.012 3.988 16 N -0.373 5.373 17 C 0.297 3.703 18 O -0.469 6.469 19 C -0.172 4.172 20 C -0.130 4.130 21 C 0.015 3.985 22 H 0.103 0.897 23 C -0.190 4.190 24 C -0.191 4.191 25 C -0.040 4.040 26 O -0.320 6.320 27 C 0.027 3.973 28 H 0.058 0.942 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.248 0.752 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.075 0.925 49 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 16.450 -18.450 -3.114 24.914 hybrid contribution 0.005 1.454 -0.265 1.478 sum 16.455 -16.996 -3.378 23.897 Atomic orbital electron populations 1.70194 1.06803 1.25876 1.55448 1.25840 0.96020 1.01660 1.01341 0.85333 0.77526 0.79121 0.78422 1.20001 1.22347 1.20236 1.19516 0.92950 0.85885 1.40904 0.91129 1.44312 1.35880 1.02284 1.50800 1.20629 0.87650 0.97783 0.89246 1.21999 1.00982 0.95896 0.97992 1.21346 0.96562 0.96806 0.98876 1.21705 0.99065 0.93463 0.97717 0.90372 1.21236 0.85371 0.96644 0.95505 1.46104 1.24399 1.12377 1.54411 1.21265 0.87738 0.82848 0.78411 1.90660 1.62639 1.31347 1.62285 1.21671 0.94165 1.00464 1.00910 1.21347 0.96162 0.96082 0.99449 1.23152 0.97003 0.91505 0.86834 0.89657 1.23012 1.01726 0.96846 0.97426 1.22944 1.02712 0.96316 0.97120 1.23617 0.90284 0.94326 0.95801 1.89170 1.49766 1.65414 1.27679 1.21021 0.97022 0.85792 0.93468 0.94195 0.99083 0.92994 0.91258 0.92730 0.92845 0.90120 0.93013 0.91039 0.75210 0.86248 0.88086 0.92647 0.89678 0.91176 0.88760 0.88787 0.90836 0.91113 0.88760 0.92457 0.97942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 11.19 21.65 0.24 -55.61 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 3 Si 0.97 44.49 29.59 68.60 2.03 46.52 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.21 9.58 84.03 0.81 -13.40 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -30.26 2.99 -699.08 -2.09 -32.36 16 10 C 0.17 8.36 5.30 86.37 0.46 8.82 16 11 C -0.13 -4.74 6.08 30.68 0.19 -4.55 16 12 C -0.10 -3.03 5.17 30.62 0.16 -2.87 16 13 C -0.10 -3.10 2.37 -10.72 -0.03 -3.12 16 14 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 15 C 0.14 3.82 5.07 86.38 0.44 4.26 16 16 N -0.72 -18.17 5.33 -463.05 -2.47 -20.64 16 17 C 0.51 13.40 7.83 87.66 0.69 14.09 16 18 O -0.59 -19.95 15.98 -3.05 -0.05 -20.00 16 19 C -0.13 -2.53 5.64 29.85 0.17 -2.36 16 20 C -0.09 -1.77 4.13 30.60 0.13 -1.65 16 21 C 0.07 1.13 3.25 31.10 0.10 1.24 16 22 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 23 C -0.15 -1.89 6.63 31.61 0.21 -1.68 16 24 C -0.15 -1.64 7.08 31.61 0.22 -1.42 16 25 C 0.04 0.49 7.65 72.48 0.55 1.04 16 26 O -0.40 -8.04 11.13 -148.98 -1.66 -9.70 16 27 C 0.15 6.12 5.60 86.36 0.48 6.60 16 28 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 29 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 9.05 7.70 -92.71 -0.71 8.34 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 1.97 8.01 -2.38 -0.02 1.95 16 40 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 42 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.06 2.18 7.14 -2.39 -0.02 2.16 16 49 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -70.16 383.29 1.19 -68.97 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.19 Total: 20.39 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.99 Total: 2.44 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.32 Total: -108.61 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.71 Total: -29.70 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.16 1.19 -68.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359714140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.057 kcal (2) G-P(sol) polarization free energy of solvation -70.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds