Wall clock time and date at job start Fri Apr 10 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00149 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00350 * 3 2 1 5 5 H 1.48499 * 109.46893 * 29.99939 * 3 2 1 6 6 H 1.48495 * 109.47541 * 150.00167 * 3 2 1 7 7 C 1.38810 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99995 * 197.36106 * 7 2 1 9 9 N 1.36939 * 119.99828 * 17.34876 * 7 2 1 10 10 C 1.46925 * 120.63018 * 27.68318 * 9 7 2 11 11 C 1.53195 * 108.77448 * 126.40951 * 10 9 7 12 12 C 1.53039 * 109.31260 * 54.63442 * 11 10 9 13 13 C 1.53035 * 109.53942 * 298.63503 * 12 11 10 14 14 H 1.08995 * 109.49800 * 301.37998 * 13 12 11 15 15 C 1.52998 * 109.49914 * 181.31665 * 13 12 11 16 16 N 1.46501 * 109.47460 * 174.99699 * 15 13 12 17 17 C 1.34775 * 120.00073 * 180.27168 * 16 15 13 18 18 O 1.21280 * 119.99971 * 359.73309 * 17 16 15 19 19 C 1.50701 * 119.99794 * 179.72332 * 17 16 15 20 20 C 1.52998 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47318 * 180.02562 * 20 19 17 22 22 H 1.08995 * 109.86484 * 53.99367 * 21 20 19 23 23 C 1.54098 * 109.88176 * 175.00285 * 21 20 19 24 24 C 1.54810 * 104.18980 * 121.45299 * 23 21 20 25 25 C 1.54990 * 102.08956 * 20.88365 * 24 23 21 26 26 O 1.43743 * 109.87776 * 292.83751 * 21 20 19 27 27 C 1.46930 * 120.62926 * 207.70149 * 9 7 2 28 28 H 0.97003 * 119.99782 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58662 * 6.62524 * 10 9 7 30 30 H 1.08997 * 109.58763 * 246.19837 * 10 9 7 31 31 H 1.08998 * 109.49363 * 294.68359 * 11 10 9 32 32 H 1.09001 * 109.52011 * 174.60549 * 11 10 9 33 33 H 1.09000 * 109.45881 * 178.60593 * 12 11 10 34 34 H 1.09007 * 109.45664 * 58.65370 * 12 11 10 35 35 H 1.09002 * 109.46919 * 54.99636 * 15 13 12 36 36 H 1.09005 * 109.47307 * 294.99757 * 15 13 12 37 37 H 0.96995 * 119.99635 * 0.02562 * 16 15 13 38 38 H 1.09002 * 109.47479 * 300.00423 * 19 17 16 39 39 H 1.09002 * 109.46829 * 60.00767 * 19 17 16 40 40 H 1.09002 * 109.47199 * 300.00425 * 20 19 17 41 41 H 1.09006 * 109.47143 * 60.00224 * 20 19 17 42 42 H 1.08993 * 110.49014 * 240.13643 * 23 21 20 43 43 H 1.09007 * 110.48563 * 2.64478 * 23 21 20 44 44 H 1.08996 * 110.90345 * 139.07715 * 24 23 21 45 45 H 1.08997 * 110.90673 * 262.64701 * 24 23 21 46 46 H 1.08999 * 110.62287 * 81.47442 * 25 24 23 47 47 H 1.09000 * 110.61705 * 204.31783 * 25 24 23 48 48 H 1.08997 * 109.58152 * 113.80414 * 27 9 7 49 49 H 1.08994 * 109.59015 * 353.37576 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 0.2277 -2.3340 -1.2755 11 6 0.5005 -3.3037 -2.4297 12 6 0.8183 -4.6891 -1.8624 13 6 2.0740 -4.6096 -0.9912 14 1 2.9080 -4.2401 -1.5878 15 6 2.4097 -6.0012 -0.4511 16 7 3.6762 -5.9476 0.2834 17 6 4.1763 -7.0652 0.8467 18 8 3.5756 -8.1142 0.7497 19 6 5.4822 -7.0112 1.5970 20 6 5.8210 -8.4041 2.1319 21 6 7.1464 -8.3492 2.8941 22 1 7.1004 -7.5771 3.6620 23 6 7.4348 -9.7169 3.5429 24 6 8.7969 -10.1421 2.9424 25 6 9.3804 -8.7865 2.4692 26 8 8.2232 -8.0729 1.9829 27 6 1.8191 -3.6547 0.1793 28 1 -0.4850 0.8401 0.0004 29 1 0.0985 -1.3255 -1.6684 30 1 -0.6745 -2.6405 -0.7462 31 1 1.3491 -2.9458 -3.0126 32 1 -0.3800 -3.3656 -3.0692 33 1 0.9886 -5.3869 -2.6822 34 1 -0.0208 -5.0357 -1.2591 35 1 2.5009 -6.7011 -1.2818 36 1 1.6155 -6.3327 0.2179 37 1 4.1565 -5.1085 0.3613 38 1 6.2736 -6.6779 0.9256 39 1 5.3942 -6.3134 2.4297 40 1 5.0297 -8.7378 2.8032 41 1 5.9090 -9.1017 1.2989 42 1 7.5096 -9.6174 4.6257 43 1 6.6585 -10.4354 3.2796 44 1 9.4328 -10.5951 3.7029 45 1 8.6562 -10.8207 2.1010 46 1 9.8377 -8.2535 3.3027 47 1 10.1046 -8.9388 1.6689 48 1 1.0467 -4.0689 0.8273 49 1 2.7399 -3.5177 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359714142.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:40 Heat of formation + Delta-G solvation = -89.113188 kcal Electronic energy + Delta-G solvation = -25817.811823 eV Core-core repulsion = 22165.205138 eV Total energy + Delta-G solvation = -3652.606685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.00430 -39.37806 -37.78187 -34.81160 -33.69291 -32.96993 -32.36871 -30.51240 -30.41345 -28.78239 -25.71649 -25.27169 -23.94000 -22.26020 -22.02419 -21.16404 -20.87563 -20.16437 -19.01391 -17.11447 -16.68936 -16.61355 -16.16548 -15.77313 -15.59294 -15.26510 -14.82700 -14.40514 -13.95271 -13.86520 -13.56084 -13.43573 -13.14330 -13.10943 -12.77306 -12.32495 -12.19418 -12.17373 -12.11591 -11.97826 -11.63417 -11.29985 -11.20606 -11.12111 -11.01532 -10.91734 -10.72586 -10.48398 -10.22049 -10.17704 -9.95657 -9.94603 -9.78531 -9.50033 -9.42158 -8.85658 -8.47418 -6.68934 -5.80026 -3.22752 2.78464 3.35126 3.36530 3.43460 3.44464 3.56757 4.22887 4.39921 4.47201 4.57599 4.69336 4.78609 4.89824 5.03295 5.10448 5.21117 5.29882 5.31879 5.34669 5.40353 5.44466 5.45469 5.48330 5.58408 5.61275 5.63809 5.73801 5.84130 5.91013 5.98601 6.02343 6.08631 6.25195 6.34413 6.38662 6.57312 6.59637 6.63486 6.71323 6.78652 6.86403 6.97077 7.39754 7.65988 7.67787 7.77661 8.36728 8.43288 9.19680 9.83300 10.40107 11.28203 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002514 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.281450 B =11135.168588 C =12355.532109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.725 5.725 17 C 0.511 3.489 18 O -0.552 6.552 19 C -0.140 4.140 20 C -0.100 4.100 21 C 0.074 3.926 22 H 0.070 0.930 23 C -0.153 4.153 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.372 6.372 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.018 0.982 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.302 -17.421 3.958 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.376 5.376 17 C 0.297 3.703 18 O -0.430 6.430 19 C -0.180 4.180 20 C -0.137 4.137 21 C 0.017 3.983 22 H 0.088 0.912 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.292 6.292 27 C 0.028 3.972 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.036 0.964 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.724 -17.864 3.725 22.833 hybrid contribution 0.622 1.209 0.229 1.379 sum 14.346 -16.654 3.954 22.334 Atomic orbital electron populations 1.70040 1.05278 1.25504 1.53762 1.25039 0.95281 0.98432 1.00917 0.86291 0.79095 0.83690 0.77693 1.21450 1.21785 1.20438 1.19175 0.92656 0.84892 1.41581 0.91699 1.44053 1.35867 1.01206 1.50299 1.20803 0.88523 0.98416 0.87956 1.22172 1.00089 0.95961 0.99872 1.21342 0.96770 0.97711 0.97972 1.21947 0.98791 0.93659 0.99417 0.90904 1.21439 0.84976 0.97849 0.95445 1.46123 1.24711 1.11628 1.55165 1.20703 0.86983 0.83569 0.79021 1.90671 1.61603 1.30093 1.60658 1.21647 0.95455 0.99695 1.01194 1.21524 0.94794 0.96503 1.00918 1.22838 0.88038 0.95964 0.91499 0.91204 1.23006 0.98001 0.97337 1.00739 1.23129 0.96543 0.98333 1.01373 1.23529 0.89428 0.90871 0.99302 1.88907 1.19582 1.71007 1.49663 1.20893 0.97432 0.86795 0.92117 0.93621 0.89534 0.96461 0.92767 0.93195 0.93468 0.92506 0.92139 0.91719 0.76190 0.88318 0.88922 0.89990 0.90462 0.90631 0.90053 0.90355 0.90467 0.92262 0.89082 0.96392 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.82 9.59 -15.06 -0.14 -6.96 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.54 2.99 -172.32 -0.52 -15.06 16 10 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.10 -1.66 5.17 -26.69 -0.14 -1.80 16 13 C -0.12 -1.95 2.37 -90.50 -0.21 -2.16 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.13 1.89 5.07 -4.04 -0.02 1.87 16 16 N -0.72 -9.82 5.33 -60.29 -0.32 -10.14 16 17 C 0.51 7.10 7.83 -10.99 -0.09 7.01 16 18 O -0.55 -9.56 15.98 5.56 0.09 -9.47 16 19 C -0.14 -1.47 5.62 -27.88 -0.16 -1.63 16 20 C -0.10 -1.01 3.99 -26.73 -0.11 -1.11 16 21 C 0.07 0.64 3.41 -26.16 -0.09 0.56 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.15 -1.06 6.64 -25.20 -0.17 -1.22 16 24 C -0.16 -0.97 7.15 -24.73 -0.18 -1.14 16 25 C 0.05 0.33 7.72 38.21 0.29 0.62 16 26 O -0.37 -3.79 10.84 -35.23 -0.38 -4.17 16 27 C 0.15 3.11 5.60 -3.71 -0.02 3.09 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.40 4.90 7.71 -40.82 -0.31 4.59 16 38 H 0.10 1.00 7.91 -51.93 -0.41 0.59 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.56 7.70 -51.92 -0.40 0.16 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.97 7.14 -51.93 -0.37 0.60 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -31.72 382.85 -10.03 -41.75 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.96 Total: 2.09 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.29 Total: -1.78 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.22 Total: -50.61 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.29 Total: -13.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.72 -10.03 -41.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359714142.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.364 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds