Wall clock time and date at job start Fri Apr 10 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00149 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00350 * 3 2 1 5 5 H 1.48499 * 109.46893 * 29.99939 * 3 2 1 6 6 H 1.48495 * 109.47541 * 150.00167 * 3 2 1 7 7 C 1.38810 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99995 * 197.36106 * 7 2 1 9 9 N 1.36939 * 119.99828 * 17.34876 * 7 2 1 10 10 C 1.46925 * 120.63018 * 27.68318 * 9 7 2 11 11 C 1.53195 * 108.77448 * 126.40951 * 10 9 7 12 12 C 1.53039 * 109.31260 * 54.63442 * 11 10 9 13 13 C 1.53035 * 109.53942 * 298.63503 * 12 11 10 14 14 H 1.08995 * 109.49800 * 301.37998 * 13 12 11 15 15 C 1.52998 * 109.49914 * 181.31665 * 13 12 11 16 16 N 1.46501 * 109.47460 * 174.99699 * 15 13 12 17 17 C 1.34775 * 120.00073 * 180.27168 * 16 15 13 18 18 O 1.21280 * 119.99971 * 359.73309 * 17 16 15 19 19 C 1.50701 * 119.99794 * 179.72332 * 17 16 15 20 20 C 1.52998 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47318 * 180.02562 * 20 19 17 22 22 H 1.08995 * 109.86484 * 53.99367 * 21 20 19 23 23 C 1.54098 * 109.88176 * 175.00285 * 21 20 19 24 24 C 1.54810 * 104.18980 * 121.45299 * 23 21 20 25 25 C 1.54990 * 102.08956 * 20.88365 * 24 23 21 26 26 O 1.43743 * 109.87776 * 292.83751 * 21 20 19 27 27 C 1.46930 * 120.62926 * 207.70149 * 9 7 2 28 28 H 0.97003 * 119.99782 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58662 * 6.62524 * 10 9 7 30 30 H 1.08997 * 109.58763 * 246.19837 * 10 9 7 31 31 H 1.08998 * 109.49363 * 294.68359 * 11 10 9 32 32 H 1.09001 * 109.52011 * 174.60549 * 11 10 9 33 33 H 1.09000 * 109.45881 * 178.60593 * 12 11 10 34 34 H 1.09007 * 109.45664 * 58.65370 * 12 11 10 35 35 H 1.09002 * 109.46919 * 54.99636 * 15 13 12 36 36 H 1.09005 * 109.47307 * 294.99757 * 15 13 12 37 37 H 0.96995 * 119.99635 * 0.02562 * 16 15 13 38 38 H 1.09002 * 109.47479 * 300.00423 * 19 17 16 39 39 H 1.09002 * 109.46829 * 60.00767 * 19 17 16 40 40 H 1.09002 * 109.47199 * 300.00425 * 20 19 17 41 41 H 1.09006 * 109.47143 * 60.00224 * 20 19 17 42 42 H 1.08993 * 110.49014 * 240.13643 * 23 21 20 43 43 H 1.09007 * 110.48563 * 2.64478 * 23 21 20 44 44 H 1.08996 * 110.90345 * 139.07715 * 24 23 21 45 45 H 1.08997 * 110.90673 * 262.64701 * 24 23 21 46 46 H 1.08999 * 110.62287 * 81.47442 * 25 24 23 47 47 H 1.09000 * 110.61705 * 204.31783 * 25 24 23 48 48 H 1.08997 * 109.58152 * 113.80414 * 27 9 7 49 49 H 1.08994 * 109.59015 * 353.37576 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 0.2277 -2.3340 -1.2755 11 6 0.5005 -3.3037 -2.4297 12 6 0.8183 -4.6891 -1.8624 13 6 2.0740 -4.6096 -0.9912 14 1 2.9080 -4.2401 -1.5878 15 6 2.4097 -6.0012 -0.4511 16 7 3.6762 -5.9476 0.2834 17 6 4.1763 -7.0652 0.8467 18 8 3.5756 -8.1142 0.7497 19 6 5.4822 -7.0112 1.5970 20 6 5.8210 -8.4041 2.1319 21 6 7.1464 -8.3492 2.8941 22 1 7.1004 -7.5771 3.6620 23 6 7.4348 -9.7169 3.5429 24 6 8.7969 -10.1421 2.9424 25 6 9.3804 -8.7865 2.4692 26 8 8.2232 -8.0729 1.9829 27 6 1.8191 -3.6547 0.1793 28 1 -0.4850 0.8401 0.0004 29 1 0.0985 -1.3255 -1.6684 30 1 -0.6745 -2.6405 -0.7462 31 1 1.3491 -2.9458 -3.0126 32 1 -0.3800 -3.3656 -3.0692 33 1 0.9886 -5.3869 -2.6822 34 1 -0.0208 -5.0357 -1.2591 35 1 2.5009 -6.7011 -1.2818 36 1 1.6155 -6.3327 0.2179 37 1 4.1565 -5.1085 0.3613 38 1 6.2736 -6.6779 0.9256 39 1 5.3942 -6.3134 2.4297 40 1 5.0297 -8.7378 2.8032 41 1 5.9090 -9.1017 1.2989 42 1 7.5096 -9.6174 4.6257 43 1 6.6585 -10.4354 3.2796 44 1 9.4328 -10.5951 3.7029 45 1 8.6562 -10.8207 2.1010 46 1 9.8377 -8.2535 3.3027 47 1 10.1046 -8.9388 1.6689 48 1 1.0467 -4.0689 0.8273 49 1 2.7399 -3.5177 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359714142.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:39 Heat of formation + Delta-G solvation = -108.768659 kcal Electronic energy + Delta-G solvation = -25818.664149 eV Core-core repulsion = 22165.205138 eV Total energy + Delta-G solvation = -3653.459011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95651 -40.23322 -39.32115 -36.26862 -34.66966 -34.50075 -32.95417 -32.30371 -31.94854 -29.58764 -27.27308 -26.85649 -24.85475 -23.81329 -22.87123 -22.36515 -21.77622 -21.34666 -20.51617 -18.69035 -17.97714 -17.36319 -17.05298 -16.80439 -16.69032 -16.48982 -16.23082 -15.78093 -15.50175 -15.05626 -14.72785 -14.51077 -14.48085 -14.20249 -14.05328 -13.78003 -13.66294 -13.40325 -13.01810 -12.90353 -12.86062 -12.59593 -12.50434 -12.27291 -12.24429 -11.95114 -11.87697 -11.82208 -11.79492 -11.58261 -11.50156 -11.34389 -11.10681 -10.78670 -10.58601 -10.52919 -10.03442 -8.68267 -7.86297 -5.31968 1.47734 1.49411 1.57799 1.68661 2.28148 2.51674 2.98023 3.28227 3.59713 3.66104 3.73382 3.91097 3.99603 4.01455 4.05288 4.07314 4.12833 4.20014 4.40440 4.41516 4.47670 4.58176 4.61533 4.65487 4.77049 4.79054 4.82015 4.85472 4.88497 4.91837 4.97872 5.01483 5.08774 5.10457 5.14111 5.20775 5.23748 5.31266 5.33555 5.40194 5.51871 5.57972 5.67284 5.78253 6.03398 6.39330 6.58930 7.15286 7.27683 7.86721 8.38798 9.19989 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002514 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.281450 B =11135.168588 C =12355.532109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.076 0.924 15 C 0.137 3.863 16 N -0.721 5.721 17 C 0.509 3.491 18 O -0.588 6.588 19 C -0.132 4.132 20 C -0.096 4.096 21 C 0.074 3.926 22 H 0.079 0.921 23 C -0.154 4.154 24 C -0.153 4.153 25 C 0.038 3.962 26 O -0.398 6.398 27 C 0.153 3.847 28 H 0.249 0.751 29 H 0.052 0.948 30 H -0.008 1.008 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.411 0.589 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.005 0.995 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.401 -18.327 4.054 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.390 4.390 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.013 3.987 16 N -0.373 5.373 17 C 0.297 3.703 18 O -0.469 6.469 19 C -0.172 4.172 20 C -0.134 4.134 21 C 0.017 3.983 22 H 0.097 0.903 23 C -0.191 4.191 24 C -0.191 4.191 25 C -0.038 4.038 26 O -0.318 6.318 27 C 0.027 3.973 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.248 0.752 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.023 0.977 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.858 -18.785 3.821 24.879 hybrid contribution -0.040 1.456 0.226 1.474 sum 15.818 -17.329 4.047 23.810 Atomic orbital electron populations 1.70202 1.06780 1.25769 1.55549 1.25815 0.96014 1.01610 1.01456 0.85268 0.78186 0.79519 0.77496 1.21326 1.22487 1.18991 1.19554 0.93085 0.85942 1.40435 0.91085 1.44330 1.35844 1.02178 1.50960 1.20639 0.87687 0.97833 0.89187 1.22000 1.00936 0.95938 0.98033 1.21343 0.96597 0.96742 0.98898 1.21708 0.98980 0.93522 0.97806 0.90584 1.21234 0.85384 0.96566 0.95559 1.46103 1.24260 1.12105 1.54828 1.21270 0.87640 0.82830 0.78512 1.90656 1.62853 1.31396 1.62028 1.21661 0.93518 1.00487 1.01499 1.21476 0.95794 0.95771 1.00359 1.22864 0.86943 0.97301 0.91227 0.90295 1.23029 0.98292 0.96254 1.01561 1.23132 0.96367 0.97857 1.01702 1.23725 0.88839 0.91209 1.00015 1.88868 1.20663 1.71696 1.50571 1.21018 0.97104 0.85663 0.93467 0.94216 0.92974 0.98951 0.92848 0.91264 0.90277 0.92701 0.91355 0.92703 0.75224 0.87562 0.86985 0.90316 0.92289 0.89131 0.90446 0.88453 0.90962 0.91170 0.88363 0.97687 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.60 11.19 21.65 0.24 -55.36 16 2 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 3 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.26 -14.00 9.59 84.03 0.81 -13.20 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -30.10 2.99 -699.10 -2.09 -32.20 16 10 C 0.17 8.31 5.31 86.36 0.46 8.77 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -3.04 5.17 30.62 0.16 -2.88 16 13 C -0.10 -3.12 2.37 -10.72 -0.03 -3.15 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.14 3.84 5.07 86.38 0.44 4.28 16 16 N -0.72 -18.31 5.33 -463.05 -2.47 -20.78 16 17 C 0.51 13.52 7.83 87.66 0.69 14.20 16 18 O -0.59 -20.02 15.98 -3.03 -0.05 -20.07 16 19 C -0.13 -2.57 5.62 29.85 0.17 -2.40 16 20 C -0.10 -1.86 3.99 30.59 0.12 -1.74 16 21 C 0.07 1.17 3.41 30.97 0.11 1.28 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 C -0.15 -1.86 6.64 31.58 0.21 -1.65 16 24 C -0.15 -1.61 7.15 31.89 0.23 -1.38 16 25 C 0.04 0.48 7.72 72.66 0.56 1.04 16 26 O -0.40 -7.53 10.84 -148.98 -1.61 -9.14 16 27 C 0.15 6.07 5.60 86.36 0.48 6.55 16 28 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.05 2.86 6.04 -2.39 -0.01 2.85 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.41 9.15 7.71 -92.71 -0.71 8.44 16 38 H 0.11 1.95 7.91 -2.39 -0.02 1.94 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 41 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.99 7.70 -2.38 -0.02 0.97 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 48 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.06 2.17 7.14 -2.39 -0.02 2.16 16 Total: -1.00 -69.23 382.85 1.24 -67.99 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.19 Total: 20.55 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.00 Total: 2.57 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.32 Total: -108.34 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.66 Total: -29.21 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.23 1.24 -67.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359714142.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.782 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds