Wall clock time and date at job start Fri Apr 10 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48501 * 109.46661 * 269.99887 * 3 2 1 5 5 H 1.48493 * 109.47081 * 29.99500 * 3 2 1 6 6 H 1.48502 * 109.46883 * 150.00006 * 3 2 1 7 7 C 1.37875 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00342 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47208 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99871 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00383 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47480 * 270.00369 * 14 13 11 16 16 C 1.53002 * 109.47469 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46817 * 64.99892 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99697 * 16 15 14 22 22 C 1.46500 * 120.00140 * 0.02562 * 13 11 10 23 23 C 1.50703 * 109.46827 * 270.00044 * 22 13 11 24 24 N 1.34780 * 120.00034 * 180.02562 * 23 22 13 25 25 O 1.21280 * 120.00245 * 359.97438 * 23 22 13 26 26 H 0.96999 * 119.99522 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47098 * 60.00159 * 9 7 2 28 28 H 1.09006 * 109.47286 * 299.99894 * 9 7 2 29 29 H 1.09002 * 109.47125 * 59.99974 * 10 9 7 30 30 H 1.09002 * 109.47133 * 299.99699 * 10 9 7 31 31 H 1.08997 * 109.47622 * 149.99808 * 14 13 11 32 32 H 1.09006 * 109.47216 * 30.00396 * 14 13 11 33 33 H 1.09008 * 109.47149 * 59.99636 * 15 14 13 34 34 H 1.08997 * 109.47163 * 299.99707 * 15 14 13 35 35 H 1.09002 * 109.47070 * 305.00072 * 16 15 14 36 36 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 37 37 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 38 38 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 40 40 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 41 41 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 42 42 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 43 43 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 44 44 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 45 45 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 46 46 H 1.09001 * 109.46889 * 29.99076 * 22 13 11 47 47 H 1.08995 * 109.47772 * 149.99952 * 22 13 11 48 48 H 0.97000 * 119.99925 * 359.97438 * 24 23 22 49 49 H 0.96993 * 119.99670 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0025 12 8 0.2789 -4.9671 0.0015 13 7 2.1656 -6.1344 0.0031 14 6 1.4332 -7.4031 0.0043 15 6 1.1785 -7.8437 1.4471 16 6 0.4130 -9.1685 1.4484 17 6 1.2896 -10.2645 0.8391 18 6 0.5244 -11.5894 0.8409 19 6 0.1614 -11.9668 2.2785 20 6 -0.7152 -10.8708 2.8878 21 6 0.0496 -9.5462 2.8858 22 6 3.6306 -6.1345 0.0037 23 6 4.1335 -6.1349 -1.4169 24 7 5.4587 -6.1356 -1.6627 25 8 3.3458 -6.1356 -2.3391 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6039 0.8923 30 1 2.8726 -3.6048 -0.8877 31 1 2.0220 -8.1631 -0.5092 32 1 0.4805 -7.2732 -0.5094 33 1 0.5896 -7.0836 1.9606 34 1 2.1311 -7.9737 1.9608 35 1 -0.4979 -9.0623 0.8592 36 1 1.5486 -9.9955 -0.1849 37 1 2.2005 -10.3707 1.4283 38 1 1.1490 -12.3704 0.4072 39 1 -0.3867 -11.4835 0.2520 40 1 1.0725 -12.0727 2.8674 41 1 -0.3841 -12.9105 2.2797 42 1 -0.9741 -11.1399 3.9117 43 1 -1.6262 -10.7649 2.2988 44 1 0.9604 -9.6524 3.4749 45 1 -0.5749 -8.7653 3.3198 46 1 3.9937 -5.2442 0.5173 47 1 3.9938 -7.0242 0.5179 48 1 6.0887 -6.1354 -0.9252 49 1 5.7823 -6.1362 -2.5771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360137817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:44 Heat of formation + Delta-G solvation = -116.189675 kcal Electronic energy + Delta-G solvation = -26354.538584 eV Core-core repulsion = 22700.757774 eV Total energy + Delta-G solvation = -3653.780810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15409 -39.00386 -38.50545 -35.41923 -33.75586 -33.51493 -33.05989 -31.00694 -30.89716 -28.87681 -27.21642 -25.65219 -23.75177 -22.67408 -21.57344 -21.13901 -20.56236 -19.89072 -18.67114 -17.35069 -17.05601 -16.81285 -16.03552 -15.68663 -15.35084 -14.92291 -14.68709 -14.63979 -14.41230 -14.27502 -14.13344 -13.67654 -13.43663 -13.00758 -12.83089 -12.37868 -12.31171 -12.22761 -12.10475 -11.88048 -11.69352 -11.31178 -11.24288 -11.08982 -10.91614 -10.79061 -10.57927 -10.56878 -10.32654 -10.17096 -10.06679 -9.91672 -9.76494 -9.59859 -9.13599 -8.94785 -8.43342 -8.28496 -5.92921 -3.97217 2.59301 2.99974 3.28308 3.34829 3.40575 3.42800 3.67096 4.48177 4.48945 4.52386 4.58621 4.80831 4.88246 4.92831 5.00662 5.08854 5.15616 5.25056 5.26407 5.31648 5.34329 5.41847 5.44971 5.48873 5.61434 5.63137 5.77729 5.83596 5.91782 5.94562 5.98162 6.06668 6.13334 6.16587 6.20249 6.26270 6.33027 6.39010 6.66558 6.74828 6.92157 7.20356 7.72385 7.77472 7.91145 8.11060 8.21362 8.41796 8.78593 9.11026 9.65828 11.18122 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.003025 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.525700 B = 9254.773439 C =10589.845653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.518 3.482 12 O -0.524 6.524 13 N -0.608 5.608 14 C 0.119 3.881 15 C -0.129 4.129 16 C -0.084 4.084 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.113 4.113 22 C 0.093 3.907 23 C 0.492 3.508 24 N -0.858 5.858 25 O -0.525 6.525 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.400 0.600 49 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.955 -24.141 4.637 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.169 4.169 11 C 0.309 3.691 12 O -0.399 6.399 13 N -0.342 5.342 14 C -0.003 4.003 15 C -0.168 4.168 16 C -0.103 4.103 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.035 4.035 23 C 0.275 3.725 24 N -0.423 5.423 25 O -0.399 6.399 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.132 0.868 47 H 0.123 0.877 48 H 0.228 0.772 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.413 -23.997 4.173 25.769 hybrid contribution 1.153 0.906 -0.107 1.470 sum 9.566 -23.091 4.066 25.322 Atomic orbital electron populations 1.70003 1.06036 1.26531 1.50199 1.25024 0.94822 0.99176 0.95360 0.86601 0.79736 0.83602 0.78058 1.20690 1.21212 1.19926 1.21200 0.92827 0.91031 1.51342 0.92729 1.18891 0.93150 0.89278 0.98627 1.21897 1.00871 0.92319 1.01842 1.21494 0.88474 0.85288 0.73860 1.90661 1.14240 1.87018 1.47934 1.47739 1.04281 1.06718 1.75480 1.21425 0.98077 0.84480 0.96339 1.22008 1.00423 0.96852 0.97504 1.21107 0.98836 0.93856 0.96543 1.21652 0.98349 0.94436 1.00901 1.21540 1.00350 0.97179 0.96718 1.21533 0.99712 0.98042 0.96339 1.21528 0.98651 0.95071 1.00522 1.21556 1.00153 0.96932 0.96428 1.21371 0.82999 1.05599 0.93532 1.21487 0.82553 0.75536 0.92901 1.43877 1.07399 1.78858 1.12207 1.90801 1.55238 1.47641 1.46195 0.92962 0.95800 0.95788 0.90463 0.90547 0.91267 0.89913 0.91106 0.92136 0.90913 0.91813 0.92128 0.92305 0.91994 0.92202 0.92406 0.92251 0.92005 0.92140 0.91840 0.86793 0.87732 0.77170 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.88 13.29 55.43 0.74 -27.15 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 10 C -0.13 -2.76 4.19 -27.88 -0.12 -2.88 16 11 C 0.52 10.67 7.67 -10.99 -0.08 10.59 16 12 O -0.52 -12.96 15.56 5.55 0.09 -12.87 16 13 N -0.61 -9.31 1.96 -175.06 -0.34 -9.66 16 14 C 0.12 1.62 5.16 -4.04 -0.02 1.60 16 15 C -0.13 -1.48 5.01 -26.73 -0.13 -1.61 16 16 C -0.08 -0.83 2.19 -90.62 -0.20 -1.03 16 17 C -0.12 -0.97 4.96 -26.73 -0.13 -1.10 16 18 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 19 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 20 C -0.12 -0.97 5.92 -26.76 -0.16 -1.13 16 21 C -0.11 -1.02 5.20 -26.76 -0.14 -1.16 16 22 C 0.09 1.00 5.69 -5.19 -0.03 0.97 16 23 C 0.49 6.07 8.06 -10.98 -0.09 5.98 16 24 N -0.86 -6.47 8.87 31.22 0.28 -6.20 16 25 O -0.52 -9.40 17.27 5.56 0.10 -9.30 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 1.43 7.40 -51.93 -0.38 1.05 16 30 H 0.08 1.59 8.00 -51.93 -0.42 1.18 16 31 H 0.07 0.81 6.50 -51.93 -0.34 0.47 16 32 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 33 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.11 1.09 6.44 -51.93 -0.33 0.75 16 47 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 48 H 0.40 1.55 8.83 -40.82 -0.36 1.19 16 49 H 0.40 2.84 8.93 -40.82 -0.36 2.48 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -38.06 390.65 -9.03 -47.09 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.80 Total: 0.14 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.95 Total: -4.84 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.67 Total: -43.00 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.18 Total: -22.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.06 -9.03 -47.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360137817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.101 kcal (2) G-P(sol) polarization free energy of solvation -38.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds