Wall clock time and date at job start Fri Apr 10 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48501 * 109.46661 * 269.99887 * 3 2 1 5 5 H 1.48493 * 109.47081 * 29.99500 * 3 2 1 6 6 H 1.48502 * 109.46883 * 150.00006 * 3 2 1 7 7 C 1.37875 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00342 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47208 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99871 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00383 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47480 * 270.00369 * 14 13 11 16 16 C 1.53002 * 109.47469 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46817 * 64.99892 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99697 * 16 15 14 22 22 C 1.46500 * 120.00140 * 0.02562 * 13 11 10 23 23 C 1.50703 * 109.46827 * 270.00044 * 22 13 11 24 24 N 1.34780 * 120.00034 * 180.02562 * 23 22 13 25 25 O 1.21280 * 120.00245 * 359.97438 * 23 22 13 26 26 H 0.96999 * 119.99522 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47098 * 60.00159 * 9 7 2 28 28 H 1.09006 * 109.47286 * 299.99894 * 9 7 2 29 29 H 1.09002 * 109.47125 * 59.99974 * 10 9 7 30 30 H 1.09002 * 109.47133 * 299.99699 * 10 9 7 31 31 H 1.08997 * 109.47622 * 149.99808 * 14 13 11 32 32 H 1.09006 * 109.47216 * 30.00396 * 14 13 11 33 33 H 1.09008 * 109.47149 * 59.99636 * 15 14 13 34 34 H 1.08997 * 109.47163 * 299.99707 * 15 14 13 35 35 H 1.09002 * 109.47070 * 305.00072 * 16 15 14 36 36 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 37 37 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 38 38 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 40 40 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 41 41 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 42 42 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 43 43 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 44 44 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 45 45 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 46 46 H 1.09001 * 109.46889 * 29.99076 * 22 13 11 47 47 H 1.08995 * 109.47772 * 149.99952 * 22 13 11 48 48 H 0.97000 * 119.99925 * 359.97438 * 24 23 22 49 49 H 0.96993 * 119.99670 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0025 12 8 0.2789 -4.9671 0.0015 13 7 2.1656 -6.1344 0.0031 14 6 1.4332 -7.4031 0.0043 15 6 1.1785 -7.8437 1.4471 16 6 0.4130 -9.1685 1.4484 17 6 1.2896 -10.2645 0.8391 18 6 0.5244 -11.5894 0.8409 19 6 0.1614 -11.9668 2.2785 20 6 -0.7152 -10.8708 2.8878 21 6 0.0496 -9.5462 2.8858 22 6 3.6306 -6.1345 0.0037 23 6 4.1335 -6.1349 -1.4169 24 7 5.4587 -6.1356 -1.6627 25 8 3.3458 -6.1356 -2.3391 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8712 -3.6039 0.8923 30 1 2.8726 -3.6048 -0.8877 31 1 2.0220 -8.1631 -0.5092 32 1 0.4805 -7.2732 -0.5094 33 1 0.5896 -7.0836 1.9606 34 1 2.1311 -7.9737 1.9608 35 1 -0.4979 -9.0623 0.8592 36 1 1.5486 -9.9955 -0.1849 37 1 2.2005 -10.3707 1.4283 38 1 1.1490 -12.3704 0.4072 39 1 -0.3867 -11.4835 0.2520 40 1 1.0725 -12.0727 2.8674 41 1 -0.3841 -12.9105 2.2797 42 1 -0.9741 -11.1399 3.9117 43 1 -1.6262 -10.7649 2.2988 44 1 0.9604 -9.6524 3.4749 45 1 -0.5749 -8.7653 3.3198 46 1 3.9937 -5.2442 0.5173 47 1 3.9938 -7.0242 0.5179 48 1 6.0887 -6.1354 -0.9252 49 1 5.7823 -6.1362 -2.5771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360137817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:42 Heat of formation + Delta-G solvation = -143.259838 kcal Electronic energy + Delta-G solvation = -26355.712434 eV Core-core repulsion = 22700.757774 eV Total energy + Delta-G solvation = -3654.954660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40545 -39.96463 -39.59873 -36.71967 -35.61645 -34.62944 -34.12185 -32.88165 -31.61956 -29.86993 -28.52670 -27.35528 -24.99314 -23.58531 -22.99371 -22.16019 -21.64658 -20.60368 -19.97081 -18.93130 -18.14161 -17.92428 -17.68265 -16.85713 -16.47517 -16.35154 -16.18609 -15.76335 -15.58673 -15.07579 -14.97233 -14.78978 -14.54681 -14.35901 -14.18029 -14.05100 -13.61176 -13.28419 -13.07392 -12.98728 -12.85530 -12.72323 -12.68468 -12.46571 -12.06040 -11.96447 -11.95775 -11.67514 -11.60353 -11.34636 -11.32144 -11.29585 -10.97729 -10.81347 -10.67346 -10.58218 -10.57857 -9.68090 -8.18563 -6.33428 1.40867 1.44662 1.55323 1.60223 1.67648 1.94919 2.42164 2.75273 3.14172 3.64930 3.74286 3.81101 3.89699 4.09913 4.12319 4.14948 4.25046 4.33768 4.35077 4.42502 4.48853 4.50963 4.55274 4.57233 4.68512 4.71883 4.76187 4.83346 4.93267 5.02379 5.11886 5.14994 5.21629 5.29364 5.34621 5.38516 5.42809 5.45953 5.52839 5.58921 5.59347 5.64145 5.82845 5.96126 6.15237 6.27225 6.57590 6.84455 7.23484 7.36877 7.43601 8.94515 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.003025 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.525700 B = 9254.773439 C =10589.845653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.045 3.955 10 C -0.115 4.115 11 C 0.513 3.487 12 O -0.585 6.585 13 N -0.596 5.596 14 C 0.120 3.880 15 C -0.117 4.117 16 C -0.082 4.082 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.111 4.111 22 C 0.083 3.917 23 C 0.490 3.510 24 N -0.831 5.831 25 O -0.592 6.592 26 H 0.263 0.737 27 H -0.028 1.028 28 H -0.014 1.014 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.135 0.865 47 H 0.159 0.841 48 H 0.422 0.578 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.374 -25.325 5.889 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.007 3.993 10 C -0.154 4.154 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.328 5.328 14 C -0.002 4.002 15 C -0.156 4.156 16 C -0.101 4.101 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.043 4.043 23 C 0.274 3.726 24 N -0.396 5.396 25 O -0.471 6.471 26 H 0.072 0.928 27 H -0.010 1.010 28 H 0.004 0.996 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.152 0.848 47 H 0.177 0.823 48 H 0.254 0.746 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 12.964 -25.235 5.452 28.889 hybrid contribution -0.188 1.201 -0.514 1.320 sum 12.776 -24.034 4.937 27.663 Atomic orbital electron populations 1.70198 1.08453 1.27840 1.51408 1.26196 0.95747 1.04124 0.94559 0.85286 0.78831 0.77463 0.78451 1.19979 1.21067 1.17353 1.21683 0.93994 0.91401 1.50881 0.90402 1.18663 0.93635 0.92608 0.94384 1.21632 0.99410 0.90448 1.03936 1.21373 0.87745 0.86751 0.73813 1.90638 1.16691 1.87993 1.51073 1.47633 1.06580 1.05500 1.73070 1.21528 0.96704 0.84146 0.97788 1.21897 1.01487 0.96568 0.95604 1.21068 0.98165 0.93789 0.97105 1.21616 0.98578 0.93872 1.00761 1.21553 1.00080 0.97208 0.97048 1.21520 0.99974 0.97846 0.95956 1.21532 0.98356 0.94913 1.01010 1.21533 1.00612 0.97027 0.95713 1.21888 0.79655 1.09247 0.93469 1.21699 0.83443 0.74779 0.92664 1.43651 1.06166 1.76276 1.13527 1.90800 1.57156 1.51188 1.47977 0.92850 1.00957 0.99602 0.86727 0.89628 0.88469 0.93913 0.94437 0.89105 0.93224 0.92126 0.90351 0.90989 0.93106 0.91185 0.91645 0.91386 0.93096 0.90763 0.93411 0.84770 0.82349 0.74572 0.76302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.19 13.29 21.45 0.28 -60.91 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.07 16 3 Si 0.98 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 9 C 0.04 2.62 4.26 29.85 0.13 2.75 16 10 C -0.11 -4.92 4.19 29.85 0.13 -4.80 16 11 C 0.51 21.89 7.67 87.66 0.67 22.56 16 12 O -0.58 -31.32 15.56 -3.05 -0.05 -31.37 16 13 N -0.60 -17.88 1.96 -826.16 -1.62 -19.50 16 14 C 0.12 3.27 5.16 86.38 0.45 3.72 16 15 C -0.12 -2.61 5.01 30.59 0.15 -2.46 16 16 C -0.08 -1.59 2.19 -10.79 -0.02 -1.61 16 17 C -0.11 -1.62 4.96 30.59 0.15 -1.47 16 18 C -0.12 -1.66 5.92 30.60 0.18 -1.47 16 19 C -0.12 -1.45 5.92 30.60 0.18 -1.27 16 20 C -0.12 -1.83 5.92 30.58 0.18 -1.65 16 21 C -0.11 -1.93 5.20 30.58 0.16 -1.77 16 22 C 0.08 1.49 5.69 85.63 0.49 1.98 16 23 C 0.49 10.82 8.06 87.66 0.71 11.52 16 24 N -0.83 -9.48 8.87 -173.53 -1.54 -11.02 16 25 O -0.59 -20.95 17.27 -3.03 -0.05 -21.01 16 26 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 27 H -0.03 -1.90 8.10 -2.39 -0.02 -1.92 16 28 H -0.01 -0.94 8.10 -2.38 -0.02 -0.96 16 29 H 0.11 4.00 7.40 -2.39 -0.02 3.98 16 30 H 0.09 3.52 8.00 -2.39 -0.02 3.50 16 31 H 0.10 2.10 6.50 -2.39 -0.02 2.09 16 32 H 0.04 1.51 7.42 -2.38 -0.02 1.49 16 33 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 0.93 6.57 -2.39 -0.02 0.91 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.13 1.93 6.44 -2.39 -0.02 1.92 16 47 H 0.16 1.19 8.07 -2.39 -0.02 1.17 16 48 H 0.42 1.20 8.83 -92.71 -0.82 0.39 16 49 H 0.41 4.52 8.93 -92.71 -0.83 3.70 16 Total: -1.00 -91.50 390.65 2.58 -88.91 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.71 Total: 13.41 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 4.24 Total: -5.43 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -2.87 Total: -91.42 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.10 Total: -52.37 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -91.50 2.58 -88.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360137817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.348 kcal (2) G-P(sol) polarization free energy of solvation -91.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds