Wall clock time and date at job start Fri Apr 10 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00410 * 2 1 4 4 H 1.48501 * 109.47564 * 240.00619 * 3 2 1 5 5 H 1.48507 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46852 * 120.00415 * 3 2 1 7 7 C 1.37879 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47005 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00012 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99682 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47170 * 186.75099 * 14 13 11 16 16 N 1.46900 * 109.54564 * 177.42915 * 15 14 13 17 17 C 1.48558 * 110.99847 * 56.91458 * 16 15 14 18 18 C 1.54386 * 104.69716 * 200.90126 * 17 16 15 19 19 C 1.54567 * 104.91076 * 23.87917 * 18 17 16 20 20 C 1.48565 * 110.99887 * 301.49527 * 16 15 14 21 21 C 1.53178 * 109.54226 * 297.60659 * 15 14 13 22 22 C 1.53106 * 109.15816 * 63.06443 * 21 15 14 23 23 O 1.42901 * 109.48637 * 57.47126 * 22 21 15 24 24 C 1.42900 * 114.10078 * 298.88729 * 23 22 21 25 25 C 1.53097 * 109.41177 * 61.16050 * 24 23 22 26 26 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47155 * 59.99460 * 9 7 2 28 28 H 1.09005 * 109.46507 * 299.99950 * 9 7 2 29 29 H 1.08993 * 109.47654 * 59.99976 * 10 9 7 30 30 H 1.08995 * 109.47372 * 299.99450 * 10 9 7 31 31 H 0.96994 * 120.00428 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.47537 * 66.75231 * 14 13 11 33 33 H 1.09000 * 109.47329 * 306.75260 * 14 13 11 34 34 H 1.08994 * 110.41022 * 319.73546 * 17 16 15 35 35 H 1.08995 * 110.41368 * 82.06915 * 17 16 15 36 36 H 1.08999 * 110.32190 * 142.80699 * 18 17 16 37 37 H 1.08997 * 110.32635 * 265.01577 * 18 17 16 38 38 H 1.08999 * 110.30495 * 241.08042 * 19 18 17 39 39 H 1.09012 * 110.40115 * 118.93834 * 19 18 17 40 40 H 1.08996 * 110.40881 * 277.81880 * 20 16 15 41 41 H 1.08999 * 110.41105 * 40.14094 * 20 16 15 42 42 H 1.09003 * 109.51907 * 182.87806 * 21 15 14 43 43 H 1.08998 * 109.52249 * 303.06736 * 21 15 14 44 44 H 1.09006 * 109.40286 * 297.49220 * 22 21 15 45 45 H 1.08994 * 109.49611 * 177.50923 * 22 21 15 46 46 H 1.08997 * 109.48301 * 301.18207 * 24 23 22 47 47 H 1.09000 * 109.48294 * 181.13940 * 24 23 22 48 48 H 1.09000 * 109.51996 * 182.48503 * 25 24 23 49 49 H 1.09005 * 109.52356 * 62.29666 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 0.0001 12 8 0.2787 -4.9671 0.0010 13 7 2.1654 -6.1344 -0.0003 14 6 1.4328 -7.4031 0.0009 15 6 2.4185 -8.5610 0.1697 16 7 1.6803 -9.8295 0.2328 17 6 0.8376 -10.0158 -0.9763 18 6 -0.2359 -11.0408 -0.5515 19 6 -0.3199 -10.9144 0.9867 20 6 0.7094 -9.8251 1.3573 21 6 3.3845 -8.5890 -1.0187 22 6 4.2064 -7.2972 -1.0286 23 8 4.9009 -7.1645 0.2132 24 6 4.0450 -7.0846 1.3548 25 6 3.2184 -8.3688 1.4618 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6247 -2.5570 0.8898 29 1 2.8718 -3.6045 0.8894 30 1 2.8717 -3.6045 -0.8905 31 1 3.1354 -6.1345 -0.0006 32 1 0.8988 -7.5152 -0.9427 33 1 0.7195 -7.4100 0.8251 34 1 0.3709 -9.0735 -1.2632 35 1 1.4345 -10.4095 -1.7989 36 1 -1.1954 -10.7947 -1.0063 37 1 0.0701 -12.0483 -0.8331 38 1 -0.0563 -11.8607 1.4590 39 1 -1.3213 -10.6073 1.2887 40 1 1.2097 -10.0772 2.2924 41 1 0.2243 -8.8523 1.4369 42 1 4.0537 -9.4442 -0.9241 43 1 2.8183 -8.6692 -1.9466 44 1 3.5402 -6.4453 -1.1655 45 1 4.9265 -7.3305 -1.8461 46 1 3.3768 -6.2300 1.2491 47 1 4.6490 -6.9651 2.2542 48 1 2.5334 -8.2917 2.3062 49 1 3.8841 -9.2194 1.6081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360139894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:46 Heat of formation + Delta-G solvation = -18.860386 kcal Electronic energy + Delta-G solvation = -27682.672645 eV Core-core repulsion = 24033.112350 eV Total energy + Delta-G solvation = -3649.560295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.86614 -39.02264 -38.40352 -35.12342 -33.48030 -33.37975 -31.63615 -30.99645 -29.99335 -29.09678 -27.43383 -25.49891 -23.99635 -23.94455 -22.31638 -21.31650 -20.78217 -20.31283 -18.76449 -17.30612 -16.65817 -16.58330 -16.20434 -15.74775 -15.52057 -15.27765 -15.24211 -14.63362 -14.49448 -14.42050 -14.32341 -14.00869 -13.21210 -12.72517 -12.68192 -12.63153 -12.56665 -12.21350 -12.16968 -12.03043 -11.82823 -11.63467 -11.59086 -11.34496 -11.20358 -10.92324 -10.75114 -10.66555 -10.63475 -10.30693 -9.98940 -9.73308 -9.65676 -9.20900 -9.09435 -8.73285 -8.59890 -8.33053 -5.97317 -4.01920 3.13043 3.27781 3.34064 3.38745 3.40698 3.64715 3.68099 4.15538 4.33990 4.43919 4.46731 4.57807 4.59729 4.71684 4.73149 4.85392 5.01160 5.09224 5.15283 5.23620 5.29661 5.36206 5.37587 5.39770 5.46419 5.48794 5.53905 5.55616 5.61467 5.68807 5.71891 5.77614 5.78444 5.81544 5.94333 6.03427 6.15970 6.18013 6.48892 6.52145 6.73553 6.83275 6.92081 7.67093 7.72528 7.82842 8.04841 8.36303 8.66648 9.06050 9.61716 11.13572 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.003236 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.787868 B = 8651.254724 C = 9459.576773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.133 4.133 11 C 0.499 3.501 12 O -0.530 6.530 13 N -0.756 5.756 14 C 0.084 3.916 15 C 0.091 3.909 16 N -0.490 5.490 17 C 0.019 3.981 18 C -0.123 4.123 19 C -0.123 4.123 20 C 0.019 3.981 21 C -0.137 4.137 22 C 0.018 3.982 23 O -0.377 6.377 24 C 0.007 3.993 25 C -0.136 4.136 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.416 0.584 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -23.983 0.288 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.173 4.173 11 C 0.288 3.712 12 O -0.405 6.405 13 N -0.430 5.430 14 C -0.041 4.041 15 C 0.000 4.000 16 N -0.213 5.213 17 C -0.108 4.108 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.108 4.108 21 C -0.175 4.175 22 C -0.060 4.060 23 O -0.296 6.296 24 C -0.070 4.070 25 C -0.174 4.174 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.271 0.729 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.388 -24.276 0.358 24.869 hybrid contribution -0.074 1.423 -0.109 1.429 sum 5.315 -22.853 0.249 23.464 Atomic orbital electron populations 1.69989 1.06068 1.26722 1.50067 1.25023 0.94833 0.99242 0.95251 0.86641 0.79542 0.83099 0.78591 1.20216 1.21283 1.20213 1.21184 0.92930 0.90972 1.51592 0.92590 1.18885 0.93096 0.89300 0.98629 1.21924 1.00809 0.91964 1.02570 1.21784 0.88872 0.86011 0.74527 1.90662 1.14529 1.87807 1.47466 1.48518 1.11595 1.05779 1.77084 1.22059 0.95652 0.83806 1.02570 1.21410 0.93730 0.88135 0.96745 1.65720 1.22879 1.29683 1.03018 1.23279 0.94566 0.98967 0.94005 1.22328 0.98507 0.99567 0.95740 1.22327 0.98807 0.99107 0.95920 1.23290 0.93228 0.98817 0.95477 1.22206 0.98193 0.99583 0.97554 1.23378 0.97484 0.97747 0.87381 1.88034 1.33178 1.94178 1.14164 1.23657 0.95097 0.98560 0.89683 1.22178 0.99228 0.99460 0.96522 0.92883 0.95814 0.95811 0.90182 0.90179 0.72939 0.91467 0.90757 0.92677 0.89954 0.91226 0.91070 0.91084 0.91230 0.89922 0.92605 0.89778 0.90572 0.89817 0.87977 0.88730 0.88151 0.90598 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 10 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 11 C 0.50 9.62 7.83 -10.98 -0.09 9.54 16 12 O -0.53 -12.43 15.96 5.56 0.09 -12.35 16 13 N -0.76 -10.87 2.31 -60.29 -0.14 -11.01 16 14 C 0.08 1.08 3.85 -4.04 -0.02 1.07 16 15 C 0.09 0.92 0.45 -131.42 -0.06 0.86 16 16 N -0.49 -4.66 5.19 -214.17 -1.11 -5.77 16 17 C 0.02 0.17 5.32 -2.18 -0.01 0.16 16 18 C -0.12 -0.95 7.02 -25.18 -0.18 -1.12 16 19 C -0.12 -0.96 7.01 -25.19 -0.18 -1.14 16 20 C 0.02 0.18 5.27 -2.18 -0.01 0.16 16 21 C -0.14 -1.31 4.78 -26.58 -0.13 -1.44 16 22 C 0.02 0.18 6.37 37.21 0.24 0.42 16 23 O -0.38 -4.36 10.67 -35.23 -0.38 -4.74 16 24 C 0.01 0.08 6.38 37.21 0.24 0.32 16 25 C -0.14 -1.35 4.74 -26.59 -0.13 -1.47 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.42 5.29 1.78 -40.82 -0.07 5.21 16 32 H 0.07 0.91 6.13 -51.93 -0.32 0.59 16 33 H 0.07 1.05 5.87 -51.93 -0.30 0.74 16 34 H 0.06 0.55 5.56 -51.93 -0.29 0.26 16 35 H 0.08 0.67 7.76 -51.93 -0.40 0.26 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 41 H 0.06 0.58 5.54 -51.93 -0.29 0.29 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.68 7.20 -51.93 -0.37 0.30 16 44 H 0.08 0.96 4.63 -51.93 -0.24 0.72 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.15 4.37 -60.25 -0.26 0.88 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.08 0.73 7.17 -51.93 -0.37 0.36 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -33.27 359.21 -9.35 -42.62 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.94 Total: 4.17 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.00 Total: -8.31 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.51 Total: -43.47 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.29 Total: -17.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.27 -9.35 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360139894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.758 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds