Wall clock time and date at job start Fri Apr 10 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00410 * 2 1 4 4 H 1.48501 * 109.47564 * 240.00619 * 3 2 1 5 5 H 1.48507 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46852 * 120.00415 * 3 2 1 7 7 C 1.37879 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47005 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00012 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99682 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47170 * 186.75099 * 14 13 11 16 16 N 1.46900 * 109.54564 * 177.42915 * 15 14 13 17 17 C 1.48558 * 110.99847 * 56.91458 * 16 15 14 18 18 C 1.54386 * 104.69716 * 200.90126 * 17 16 15 19 19 C 1.54567 * 104.91076 * 23.87917 * 18 17 16 20 20 C 1.48565 * 110.99887 * 301.49527 * 16 15 14 21 21 C 1.53178 * 109.54226 * 297.60659 * 15 14 13 22 22 C 1.53106 * 109.15816 * 63.06443 * 21 15 14 23 23 O 1.42901 * 109.48637 * 57.47126 * 22 21 15 24 24 C 1.42900 * 114.10078 * 298.88729 * 23 22 21 25 25 C 1.53097 * 109.41177 * 61.16050 * 24 23 22 26 26 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47155 * 59.99460 * 9 7 2 28 28 H 1.09005 * 109.46507 * 299.99950 * 9 7 2 29 29 H 1.08993 * 109.47654 * 59.99976 * 10 9 7 30 30 H 1.08995 * 109.47372 * 299.99450 * 10 9 7 31 31 H 0.96994 * 120.00428 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.47537 * 66.75231 * 14 13 11 33 33 H 1.09000 * 109.47329 * 306.75260 * 14 13 11 34 34 H 1.08994 * 110.41022 * 319.73546 * 17 16 15 35 35 H 1.08995 * 110.41368 * 82.06915 * 17 16 15 36 36 H 1.08999 * 110.32190 * 142.80699 * 18 17 16 37 37 H 1.08997 * 110.32635 * 265.01577 * 18 17 16 38 38 H 1.08999 * 110.30495 * 241.08042 * 19 18 17 39 39 H 1.09012 * 110.40115 * 118.93834 * 19 18 17 40 40 H 1.08996 * 110.40881 * 277.81880 * 20 16 15 41 41 H 1.08999 * 110.41105 * 40.14094 * 20 16 15 42 42 H 1.09003 * 109.51907 * 182.87806 * 21 15 14 43 43 H 1.08998 * 109.52249 * 303.06736 * 21 15 14 44 44 H 1.09006 * 109.40286 * 297.49220 * 22 21 15 45 45 H 1.08994 * 109.49611 * 177.50923 * 22 21 15 46 46 H 1.08997 * 109.48301 * 301.18207 * 24 23 22 47 47 H 1.09000 * 109.48294 * 181.13940 * 24 23 22 48 48 H 1.09000 * 109.51996 * 182.48503 * 25 24 23 49 49 H 1.09005 * 109.52356 * 62.29666 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 0.0001 12 8 0.2787 -4.9671 0.0010 13 7 2.1654 -6.1344 -0.0003 14 6 1.4328 -7.4031 0.0009 15 6 2.4185 -8.5610 0.1697 16 7 1.6803 -9.8295 0.2328 17 6 0.8376 -10.0158 -0.9763 18 6 -0.2359 -11.0408 -0.5515 19 6 -0.3199 -10.9144 0.9867 20 6 0.7094 -9.8251 1.3573 21 6 3.3845 -8.5890 -1.0187 22 6 4.2064 -7.2972 -1.0286 23 8 4.9009 -7.1645 0.2132 24 6 4.0450 -7.0846 1.3548 25 6 3.2184 -8.3688 1.4618 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6247 -2.5570 0.8898 29 1 2.8718 -3.6045 0.8894 30 1 2.8717 -3.6045 -0.8905 31 1 3.1354 -6.1345 -0.0006 32 1 0.8988 -7.5152 -0.9427 33 1 0.7195 -7.4100 0.8251 34 1 0.3709 -9.0735 -1.2632 35 1 1.4345 -10.4095 -1.7989 36 1 -1.1954 -10.7947 -1.0063 37 1 0.0701 -12.0483 -0.8331 38 1 -0.0563 -11.8607 1.4590 39 1 -1.3213 -10.6073 1.2887 40 1 1.2097 -10.0772 2.2924 41 1 0.2243 -8.8523 1.4369 42 1 4.0537 -9.4442 -0.9241 43 1 2.8183 -8.6692 -1.9466 44 1 3.5402 -6.4453 -1.1655 45 1 4.9265 -7.3305 -1.8461 46 1 3.3768 -6.2300 1.2491 47 1 4.6490 -6.9651 2.2542 48 1 2.5334 -8.2917 2.3062 49 1 3.8841 -9.2194 1.6081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360139894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:46 Heat of formation + Delta-G solvation = -41.721878 kcal Electronic energy + Delta-G solvation = -27683.663994 eV Core-core repulsion = 24033.112350 eV Total energy + Delta-G solvation = -3650.551644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.85104 -40.27391 -39.41587 -36.15966 -35.57661 -34.52610 -32.97752 -32.44272 -30.75922 -29.80087 -28.82995 -27.17446 -25.13540 -24.74491 -23.51639 -22.91200 -21.44834 -21.33539 -20.04827 -18.79312 -18.06754 -17.65869 -17.19181 -17.03641 -16.61082 -16.54892 -16.21264 -16.13290 -15.75066 -15.73781 -15.24692 -14.93132 -14.46285 -14.22193 -14.20862 -13.55131 -13.49584 -13.33422 -13.27667 -13.11948 -12.94729 -12.78688 -12.68206 -12.56927 -12.51788 -12.24680 -12.02142 -11.96361 -11.68329 -11.54912 -11.36527 -11.34890 -11.17759 -10.89541 -10.57344 -10.45742 -9.93998 -9.51169 -8.19191 -6.33516 1.41774 1.46218 1.53951 1.56670 2.06810 2.42843 2.74720 2.86960 3.13729 3.34814 3.49898 3.68103 3.74482 3.84392 3.88343 3.95465 3.97255 4.08061 4.23503 4.25567 4.30344 4.42963 4.44551 4.49711 4.54547 4.58935 4.59893 4.71406 4.74369 4.76461 4.86590 4.93417 4.97007 5.01690 5.03742 5.06550 5.12074 5.22610 5.25517 5.26566 5.47489 5.58696 5.77992 5.82472 5.91063 6.07668 6.15462 6.31201 6.83942 7.16761 7.36786 8.93218 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.003236 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.787868 B = 8651.254724 C = 9459.576773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.045 3.955 10 C -0.124 4.124 11 C 0.502 3.498 12 O -0.582 6.582 13 N -0.730 5.730 14 C 0.085 3.915 15 C 0.097 3.903 16 N -0.486 5.486 17 C 0.016 3.984 18 C -0.122 4.122 19 C -0.122 4.122 20 C 0.016 3.984 21 C -0.133 4.133 22 C 0.015 3.985 23 O -0.385 6.385 24 C 0.007 3.993 25 C -0.133 4.133 26 H 0.263 0.737 27 H -0.017 1.017 28 H -0.017 1.017 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.428 0.572 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -25.124 0.221 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.163 4.163 11 C 0.291 3.709 12 O -0.461 6.461 13 N -0.403 5.403 14 C -0.040 4.040 15 C 0.006 3.994 16 N -0.208 5.208 17 C -0.112 4.112 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.112 4.112 21 C -0.171 4.171 22 C -0.062 4.062 23 O -0.304 6.304 24 C -0.071 4.071 25 C -0.171 4.171 26 H 0.072 0.928 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.285 0.715 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.141 0.859 46 H 0.094 0.906 47 H 0.135 0.865 48 H 0.095 0.905 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.121 -25.469 0.290 26.734 hybrid contribution -0.925 1.696 -0.087 1.934 sum 7.196 -23.773 0.203 24.839 Atomic orbital electron populations 1.70171 1.08294 1.27905 1.51304 1.26133 0.95730 1.03927 0.94545 0.85373 0.78067 0.77299 0.79515 1.18669 1.21295 1.18670 1.21675 0.94004 0.91564 1.51073 0.90607 1.18661 0.93574 0.92258 0.94808 1.21709 0.99504 0.90311 1.04812 1.21549 0.88025 0.87082 0.74284 1.90647 1.16602 1.88511 1.50383 1.48393 1.12024 1.05005 1.74853 1.22188 0.96235 0.83822 1.01726 1.21390 0.93266 0.87175 0.97562 1.65783 1.23071 1.28564 1.03410 1.23344 0.94996 0.98701 0.94126 1.22344 0.98257 0.99773 0.95582 1.22341 0.98473 0.99077 0.96118 1.23337 0.93556 0.98457 0.95816 1.22192 0.97994 0.99536 0.97394 1.23446 0.97840 0.97271 0.87648 1.88038 1.33576 1.94188 1.14560 1.23652 0.95118 0.98007 0.90292 1.22162 0.99185 0.99418 0.96287 0.92821 0.99831 0.99813 0.87828 0.87835 0.71482 0.92139 0.92135 0.94216 0.88839 0.91004 0.89875 0.89947 0.91122 0.89116 0.94381 0.88870 0.89881 0.91381 0.85904 0.90552 0.86480 0.90454 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.51 4.26 29.85 0.13 2.64 16 10 C -0.12 -5.08 5.64 29.85 0.17 -4.91 16 11 C 0.50 19.86 7.83 87.66 0.69 20.55 16 12 O -0.58 -28.88 15.96 -3.03 -0.05 -28.92 16 13 N -0.73 -20.91 2.31 -463.05 -1.07 -21.98 16 14 C 0.09 2.20 3.85 86.38 0.33 2.53 16 15 C 0.10 1.85 0.45 3.65 0.00 1.85 16 16 N -0.49 -8.50 5.19 -831.50 -4.32 -12.81 16 17 C 0.02 0.26 5.32 86.45 0.46 0.72 16 18 C -0.12 -1.68 7.02 31.60 0.22 -1.46 16 19 C -0.12 -1.74 7.01 31.60 0.22 -1.51 16 20 C 0.02 0.27 5.27 86.45 0.46 0.73 16 21 C -0.13 -2.24 4.78 30.69 0.15 -2.10 16 22 C 0.02 0.28 6.37 72.02 0.46 0.74 16 23 O -0.38 -7.96 10.67 -148.98 -1.59 -9.55 16 24 C 0.01 0.13 6.38 72.01 0.46 0.59 16 25 C -0.13 -2.39 4.74 30.69 0.15 -2.24 16 26 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 27 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 28 H -0.02 -1.05 8.10 -2.38 -0.02 -1.07 16 29 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 31 H 0.43 10.41 1.78 -92.71 -0.16 10.24 16 32 H 0.06 1.67 6.13 -2.38 -0.01 1.66 16 33 H 0.06 1.77 5.87 -2.39 -0.01 1.75 16 34 H 0.04 0.78 5.56 -2.39 -0.01 0.77 16 35 H 0.09 1.33 7.76 -2.39 -0.02 1.31 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.09 1.41 7.76 -2.39 -0.02 1.39 16 41 H 0.04 0.80 5.54 -2.39 -0.01 0.79 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.30 7.20 -2.39 -0.02 1.29 16 44 H 0.07 1.45 4.63 -2.38 -0.01 1.44 16 45 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.08 1.75 4.37 -18.80 -0.08 1.67 16 47 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.08 1.38 7.17 -2.39 -0.02 1.36 16 49 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -74.61 359.21 0.58 -74.04 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.71 Total: 24.88 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.58 Total: -12.72 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -5.10 Total: -94.09 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.64 Total: -38.48 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.61 0.58 -74.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360139894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.315 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds