Wall clock time and date at job start Fri Apr 10 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00316 * 2 1 4 4 H 1.48497 * 109.47302 * 270.00244 * 3 2 1 5 5 H 1.48497 * 109.46810 * 30.00322 * 3 2 1 6 6 H 1.48501 * 109.47212 * 150.00111 * 3 2 1 7 7 C 1.37878 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00702 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99435 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46741 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47039 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00000 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00377 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00270 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46932 * 179.97438 * 14 13 11 16 16 N 1.46501 * 109.46932 * 180.02562 * 15 14 13 17 17 C 1.34771 * 119.99915 * 180.02562 * 16 15 14 18 18 O 1.21278 * 120.00224 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00023 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47344 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46817 * 64.99877 * 20 19 17 22 22 C 1.52999 * 109.47317 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47159 * 300.00546 * 22 21 20 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 22 21 25 25 C 1.53000 * 109.47233 * 184.99683 * 20 19 17 26 26 H 0.97003 * 119.99535 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47410 * 60.00550 * 9 7 2 28 28 H 1.08997 * 109.47424 * 300.00072 * 9 7 2 29 29 H 1.08999 * 109.47369 * 60.00176 * 10 9 7 30 30 H 1.08996 * 109.47536 * 300.00047 * 10 9 7 31 31 H 0.97004 * 119.99318 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47004 * 59.99859 * 14 13 11 33 33 H 1.08997 * 109.46832 * 299.99518 * 14 13 11 34 34 H 1.08995 * 109.46928 * 59.99933 * 15 14 13 35 35 H 1.08997 * 109.47011 * 300.00003 * 15 14 13 36 36 H 0.97002 * 119.99602 * 359.97438 * 16 15 14 37 37 H 1.09008 * 109.47224 * 59.99699 * 19 17 16 38 38 H 1.08997 * 109.47214 * 299.99692 * 19 17 16 39 39 H 1.09002 * 109.47070 * 305.00057 * 20 19 17 40 40 H 1.08996 * 109.47853 * 300.00202 * 21 20 19 41 41 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 42 42 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 44 44 H 1.09002 * 109.46935 * 299.99411 * 23 22 21 45 45 H 1.09001 * 109.46812 * 179.97438 * 23 22 21 46 46 H 1.08993 * 109.47194 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.46695 * 59.99734 * 24 23 22 48 48 H 1.08992 * 109.47399 * 300.00166 * 25 20 19 49 49 H 1.09004 * 109.46724 * 60.00652 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2788 -4.9671 -0.0021 13 7 2.1655 -6.1344 -0.0008 14 6 1.4329 -7.4032 -0.0008 15 6 2.4272 -8.5661 -0.0009 16 7 1.6946 -9.8348 -0.0016 17 6 2.3685 -11.0020 -0.0013 18 8 3.5812 -11.0021 -0.0009 19 6 1.6150 -12.3070 -0.0026 20 6 2.6091 -13.4700 -0.0026 21 6 3.4030 -13.4622 1.3053 22 6 4.3968 -14.6255 1.3057 23 6 3.6355 -15.9467 1.1789 24 6 2.8416 -15.9545 -0.1289 25 6 1.8483 -14.7914 -0.1295 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 3.1355 -6.1344 -0.0004 32 1 0.8066 -7.4610 -0.8910 33 1 0.8061 -7.4607 0.8890 34 1 3.0538 -8.5084 0.8890 35 1 3.0538 -8.5083 -0.8909 36 1 0.7246 -9.8347 -0.0015 37 1 0.9892 -12.3644 -0.8933 38 1 0.9874 -12.3651 0.8867 39 1 3.2939 -13.3627 -0.8439 40 1 3.9450 -12.5209 1.3959 41 1 2.7183 -13.5696 2.1466 42 1 4.9620 -14.6203 2.2377 43 1 5.0815 -14.5186 0.4644 44 1 2.9507 -16.0536 2.0202 45 1 4.3435 -16.7754 1.1788 46 1 2.2997 -16.8958 -0.2194 47 1 3.5264 -15.8475 -0.9702 48 1 1.1637 -14.8987 0.7117 49 1 1.2828 -14.7969 -1.0613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360154509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:49 Heat of formation + Delta-G solvation = -147.875401 kcal Electronic energy + Delta-G solvation = -24548.089572 eV Core-core repulsion = 20892.934766 eV Total energy + Delta-G solvation = -3655.154806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12228 -40.63688 -39.07645 -36.96937 -35.55552 -34.96929 -33.62596 -33.00913 -31.54910 -30.47351 -28.17071 -27.23168 -24.36378 -23.47410 -23.13585 -22.60857 -21.32262 -21.06703 -20.57150 -18.84487 -18.06651 -17.57908 -17.11029 -16.82588 -16.65527 -16.44761 -16.34706 -16.07735 -15.60501 -15.09124 -14.90923 -14.86421 -14.72370 -14.34045 -14.14916 -14.10818 -13.32988 -13.22994 -13.05470 -12.96903 -12.85589 -12.79946 -12.75755 -12.46995 -12.43535 -11.95221 -11.90588 -11.81787 -11.63237 -11.30913 -11.30301 -11.27787 -10.91042 -10.81207 -10.56239 -10.54777 -10.18042 -10.07351 -8.17478 -6.31223 1.42956 1.45360 1.56261 1.67086 1.69782 1.83351 2.42346 2.64852 3.15748 3.60884 3.73780 3.81165 3.86353 4.00409 4.07497 4.09194 4.27246 4.35546 4.38117 4.50718 4.53112 4.56942 4.60850 4.63710 4.70024 4.77678 4.82154 4.86070 4.87401 4.90338 5.06922 5.09865 5.21690 5.27986 5.30292 5.34007 5.37267 5.43028 5.45925 5.52090 5.58641 5.64734 5.64823 5.86485 6.18618 6.51119 6.57631 6.87305 7.26340 7.31453 7.39131 8.95065 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.052266 B = 0.001561 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.588125 B =17935.351414 C =18285.505669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.586 6.586 13 N -0.718 5.718 14 C 0.113 3.887 15 C 0.121 3.879 16 N -0.722 5.722 17 C 0.510 3.490 18 O -0.576 6.576 19 C -0.132 4.132 20 C -0.069 4.069 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.111 4.111 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.418 0.582 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.417 0.583 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -34.220 0.785 34.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.465 6.465 13 N -0.373 5.373 14 C -0.011 4.011 15 C -0.004 4.004 16 N -0.376 5.376 17 C 0.298 3.702 18 O -0.455 6.455 19 C -0.172 4.172 20 C -0.088 4.088 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.148 4.148 26 H 0.071 0.929 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.255 0.745 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.188 -34.127 0.789 34.692 hybrid contribution 0.042 1.211 -0.017 1.212 sum 6.230 -32.916 0.772 33.509 Atomic orbital electron populations 1.70174 1.08258 1.27762 1.51492 1.26114 0.95713 1.03866 0.94652 0.85333 0.78664 0.77826 0.78488 1.19753 1.21190 1.18006 1.21732 0.94020 0.91686 1.50765 0.90640 1.18707 0.93765 0.92435 0.94830 1.21645 0.99354 0.90040 1.04979 1.21288 0.87784 0.86588 0.74063 1.90662 1.16569 1.88330 1.50987 1.45711 1.11155 1.04462 1.75970 1.21354 0.94742 0.82252 1.02750 1.21232 0.94084 0.82006 1.03051 1.45829 1.11329 1.04854 1.75552 1.21318 0.88004 0.86368 0.74511 1.90681 1.15913 1.88103 1.50817 1.21820 0.99145 0.89620 1.06597 1.20877 0.96106 0.93697 0.98149 1.21659 0.98217 0.98504 0.97215 1.21502 0.97882 0.95146 1.01128 1.21545 0.99078 0.96728 0.98223 1.21526 0.98155 0.98703 0.97425 1.21569 0.97646 0.92807 1.02776 0.92882 0.99802 0.99800 0.87677 0.87671 0.74493 0.91345 0.91347 0.90900 0.90898 0.74667 0.86460 0.86666 0.92516 0.92734 0.91916 0.92382 0.93212 0.91597 0.91906 0.90972 0.92725 0.90908 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.29 21.45 0.28 -58.91 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.54 -30.84 9.11 25.60 0.23 -30.60 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.04 2.22 4.26 29.85 0.13 2.35 16 10 C -0.12 -4.71 5.64 29.85 0.17 -4.54 16 11 C 0.51 19.02 7.83 87.65 0.69 19.70 16 12 O -0.59 -27.68 15.98 -3.04 -0.05 -27.73 16 13 N -0.72 -17.75 5.56 -463.05 -2.57 -20.32 16 14 C 0.11 2.32 5.79 86.38 0.50 2.82 16 15 C 0.12 1.98 5.79 86.38 0.50 2.48 16 16 N -0.72 -9.81 5.56 -463.08 -2.57 -12.39 16 17 C 0.51 8.43 7.55 87.66 0.66 9.09 16 18 O -0.58 -14.37 13.97 -3.02 -0.04 -14.41 16 19 C -0.13 -1.25 5.17 29.85 0.15 -1.10 16 20 C -0.07 -0.86 1.84 -10.79 -0.02 -0.88 16 21 C -0.12 -1.79 4.94 30.59 0.15 -1.63 16 22 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 23 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 24 C -0.12 -1.13 5.92 30.58 0.18 -0.95 16 25 C -0.11 -0.93 5.20 30.58 0.16 -0.78 16 26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 27 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 28 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 29 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.42 7.52 8.47 -92.71 -0.79 6.74 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 3.51 8.47 -92.71 -0.79 2.72 16 37 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.96 7.95 -2.39 -0.02 0.94 16 40 H 0.05 1.14 5.95 -2.39 -0.01 1.12 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -80.84 393.07 0.76 -80.08 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.65 Total: 13.94 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 4.33 Total: -6.47 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -4.86 Total: -91.62 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.09 Total: -42.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -80.84 0.76 -80.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360154509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.795 kcal (2) G-P(sol) polarization free energy of solvation -80.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds