Wall clock time and date at job start Fri Apr 10 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48497 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46957 * 299.99658 * 3 2 1 6 6 H 1.48496 * 109.47335 * 59.99613 * 3 2 1 7 7 C 1.38811 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00081 * 197.36698 * 7 2 1 9 9 N 1.36942 * 120.00153 * 17.37621 * 7 2 1 10 10 C 1.46925 * 120.62888 * 27.66806 * 9 7 2 11 11 C 1.53192 * 108.77213 * 126.39512 * 10 9 7 12 12 C 1.53040 * 109.31469 * 54.63361 * 11 10 9 13 13 C 1.53043 * 109.54030 * 298.63631 * 12 11 10 14 14 H 1.09001 * 109.49646 * 301.41257 * 13 12 11 15 15 C 1.52995 * 109.50120 * 181.31529 * 13 12 11 16 16 N 1.46494 * 109.47341 * 175.00293 * 15 13 12 17 17 C 1.34779 * 120.00116 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99624 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00002 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.46813 * 179.97438 * 19 17 16 21 21 O 1.42899 * 110.01641 * 63.61125 * 20 19 17 22 22 C 1.54265 * 110.03555 * 302.16631 * 20 19 17 23 23 C 1.54886 * 104.19632 * 217.10809 * 22 20 19 24 24 C 1.54890 * 102.74823 * 37.93916 * 23 22 20 25 25 C 1.53879 * 110.02824 * 184.99842 * 20 19 17 26 26 C 1.46922 * 120.62861 * 207.67459 * 9 7 2 27 27 H 0.97007 * 119.99736 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58974 * 6.61272 * 10 9 7 29 29 H 1.08995 * 109.58796 * 246.18274 * 10 9 7 30 30 H 1.09005 * 109.49978 * 294.68656 * 11 10 9 31 31 H 1.09001 * 109.49945 * 174.58708 * 11 10 9 32 32 H 1.09001 * 109.46366 * 178.61536 * 12 11 10 33 33 H 1.09000 * 109.44869 * 58.64898 * 12 11 10 34 34 H 1.09006 * 109.46808 * 295.00242 * 15 13 12 35 35 H 1.08996 * 109.47001 * 54.99383 * 15 13 12 36 36 H 0.96997 * 120.00035 * 359.97438 * 16 15 13 37 37 H 1.09001 * 109.46986 * 299.99809 * 19 17 16 38 38 H 1.09003 * 109.46960 * 59.99784 * 19 17 16 39 39 H 0.96697 * 114.00092 * 300.70075 * 21 20 19 40 40 H 1.08998 * 110.48389 * 335.78681 * 22 20 19 41 41 H 1.09001 * 110.48442 * 98.42750 * 22 20 19 42 42 H 1.08997 * 110.75547 * 279.62574 * 23 22 20 43 43 H 1.08997 * 110.91801 * 156.32910 * 23 22 20 44 44 H 1.09004 * 110.48696 * 203.37793 * 24 23 22 45 45 H 1.09008 * 110.59840 * 80.79732 * 24 23 22 46 46 H 1.08998 * 110.03143 * 238.56845 * 25 20 19 47 47 H 1.08998 * 110.03285 * 359.97438 * 25 20 19 48 48 H 1.09003 * 109.58836 * 113.82034 * 26 9 7 49 49 H 1.08995 * 109.58818 * 353.38937 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3531 10 6 0.2279 -2.3348 -1.2742 11 6 0.5011 -3.3048 -2.4279 12 6 0.8191 -4.6900 -1.8601 13 6 2.0746 -4.6100 -0.9886 14 1 2.9085 -4.2399 -1.5850 15 6 2.4105 -6.0013 -0.4479 16 7 3.6766 -5.9471 0.2869 17 6 4.1744 -7.0634 0.8550 18 8 3.5739 -8.1126 0.7582 19 6 5.4772 -7.0078 1.6105 20 6 5.8129 -8.3991 2.1513 21 8 6.0176 -9.3085 1.0682 22 6 4.6711 -8.9036 3.0576 23 6 5.3966 -9.6675 4.1929 24 6 6.6556 -8.7994 4.4389 25 6 7.0747 -8.3329 3.0295 26 6 1.8192 -3.6547 0.1814 27 1 -0.4850 0.8401 -0.0004 28 1 0.0986 -1.3265 -1.6675 29 1 -0.6743 -2.6413 -0.7450 30 1 1.3499 -2.9471 -3.0108 31 1 -0.3795 -3.3671 -3.0672 32 1 0.9898 -5.3881 -2.6796 33 1 -0.0201 -5.0363 -1.2569 34 1 1.6161 -6.3327 0.2209 35 1 2.5019 -6.7014 -1.2783 36 1 4.1571 -5.1081 0.3641 37 1 6.2713 -6.6762 0.9415 38 1 5.3859 -6.3078 2.4411 39 1 5.2531 -9.4023 0.4835 40 1 4.1066 -8.0639 3.4630 41 1 4.0139 -9.5751 2.5052 42 1 5.6759 -10.6695 3.8672 43 1 4.7776 -9.7128 5.0889 44 1 7.4467 -9.3950 4.8945 45 1 6.4138 -7.9427 5.0681 46 1 7.8428 -8.9951 2.6301 47 1 7.4481 -7.3096 3.0701 48 1 1.0467 -4.0689 0.8294 49 1 2.7398 -3.5173 0.7486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362210700.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:52 Heat of formation + Delta-G solvation = -95.752614 kcal Electronic energy + Delta-G solvation = -26604.284124 eV Core-core repulsion = 22951.389532 eV Total energy + Delta-G solvation = -3652.894593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46740 -38.65644 -37.66228 -35.03737 -34.70614 -33.08351 -31.38279 -30.49345 -30.05813 -28.93357 -26.42376 -25.35751 -24.67898 -22.17386 -21.22181 -21.01892 -20.54412 -19.89901 -19.09833 -17.26865 -16.68437 -16.66075 -15.96163 -15.76014 -15.37118 -15.07601 -14.86194 -14.43835 -13.85586 -13.73796 -13.53225 -13.46894 -13.05871 -12.83012 -12.74737 -12.40533 -12.30003 -12.22117 -12.03352 -11.59557 -11.35593 -11.34325 -11.21040 -11.06800 -10.86572 -10.77266 -10.71740 -10.53565 -10.26479 -10.22845 -9.99873 -9.97865 -9.84888 -9.56549 -9.46908 -8.99701 -8.51857 -6.73304 -5.84268 -3.27085 2.57896 3.19588 3.32565 3.40688 3.42295 4.06403 4.33668 4.42611 4.44280 4.61312 4.83500 4.93758 5.04855 5.08191 5.24747 5.27950 5.31242 5.38973 5.41258 5.43676 5.53118 5.56882 5.64026 5.69720 5.76867 5.78451 5.88102 5.90073 5.93632 5.95816 6.15003 6.18038 6.21930 6.28125 6.32533 6.45271 6.53848 6.65242 6.71986 6.80972 6.90560 7.35243 7.49792 7.62585 7.66753 7.73521 8.19205 8.38886 9.15288 9.78912 10.35484 11.23956 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.002899 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.992495 B = 9655.844024 C =10650.355321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.721 5.721 17 C 0.513 3.487 18 O -0.550 6.550 19 C -0.172 4.172 20 C 0.149 3.851 21 O -0.563 6.563 22 C -0.139 4.139 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.114 4.114 26 C 0.155 3.845 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.404 0.596 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.384 0.616 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.018 0.982 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 -15.346 3.308 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.371 5.371 17 C 0.300 3.700 18 O -0.430 6.430 19 C -0.212 4.212 20 C 0.107 3.893 21 O -0.372 6.372 22 C -0.177 4.177 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.152 4.152 26 C 0.028 3.972 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.239 0.761 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.235 0.765 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.036 0.964 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.339 -15.968 3.515 19.345 hybrid contribution -0.028 1.544 -0.271 1.568 sum 10.311 -14.423 3.244 18.025 Atomic orbital electron populations 1.70052 1.05294 1.25444 1.53701 1.25040 0.95274 0.98445 1.00850 0.86243 0.79336 0.83972 0.77320 1.20262 1.21536 1.21706 1.19195 0.92660 0.84868 1.41695 0.91703 1.44050 1.35896 1.01180 1.50270 1.20806 0.88512 0.98444 0.87954 1.22173 1.00119 0.95925 0.99881 1.21340 0.96711 0.97759 0.97952 1.21960 0.98862 0.93591 0.99467 0.90893 1.21470 0.84792 0.98006 0.95465 1.46130 1.24810 1.11643 1.54561 1.20611 0.86634 0.83811 0.78942 1.90617 1.61512 1.29880 1.60971 1.22585 0.96106 1.00724 1.01785 1.21493 0.94813 0.86134 0.86822 1.86416 1.44329 1.65031 1.41424 1.23013 0.97371 1.00631 0.96659 1.22501 0.96435 0.99006 0.98367 1.22362 0.97942 0.99639 0.96233 1.22172 0.96619 1.02135 0.94234 1.20888 0.97389 0.86874 0.92081 0.93638 0.89510 0.96447 0.92755 0.93153 0.93449 0.92494 0.91576 0.91960 0.76123 0.88158 0.87829 0.76499 0.91414 0.89868 0.91405 0.91665 0.91511 0.91435 0.90314 0.90756 0.96413 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.21 2.99 -172.32 -0.52 -14.73 16 10 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 13 C -0.12 -1.86 2.37 -90.50 -0.21 -2.08 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.13 1.74 5.07 -4.05 -0.02 1.72 16 16 N -0.72 -8.78 5.33 -60.30 -0.32 -9.11 16 17 C 0.51 6.28 7.31 -10.98 -0.08 6.20 16 18 O -0.55 -8.06 12.51 -9.79 -0.12 -8.18 16 19 C -0.17 -1.65 4.62 -27.88 -0.13 -1.78 16 20 C 0.15 1.55 0.98 -89.50 -0.09 1.47 16 21 O -0.56 -6.92 12.89 -50.58 -0.65 -7.57 16 22 C -0.14 -1.50 4.67 -25.07 -0.12 -1.62 16 23 C -0.13 -1.14 6.91 -24.74 -0.17 -1.31 16 24 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 25 C -0.11 -1.00 6.27 -25.61 -0.16 -1.17 16 26 C 0.15 3.00 5.60 -3.71 -0.02 2.98 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 4.45 7.71 -40.82 -0.31 4.13 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.38 4.67 6.90 45.56 0.31 4.98 16 40 H 0.07 0.74 7.80 -51.93 -0.41 0.34 16 41 H 0.08 1.04 7.20 -51.93 -0.37 0.66 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.08 0.74 7.95 -51.93 -0.41 0.32 16 47 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -29.97 374.26 -10.27 -40.24 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.17 Total: 6.91 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.72 Total: -4.24 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.22 Total: -48.88 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.77 Total: -15.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.97 -10.27 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362210700.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.517 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds