Wall clock time and date at job start Fri Apr 10 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48497 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46957 * 299.99658 * 3 2 1 6 6 H 1.48496 * 109.47335 * 59.99613 * 3 2 1 7 7 C 1.38811 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00081 * 197.36698 * 7 2 1 9 9 N 1.36942 * 120.00153 * 17.37621 * 7 2 1 10 10 C 1.46925 * 120.62888 * 27.66806 * 9 7 2 11 11 C 1.53192 * 108.77213 * 126.39512 * 10 9 7 12 12 C 1.53040 * 109.31469 * 54.63361 * 11 10 9 13 13 C 1.53043 * 109.54030 * 298.63631 * 12 11 10 14 14 H 1.09001 * 109.49646 * 301.41257 * 13 12 11 15 15 C 1.52995 * 109.50120 * 181.31529 * 13 12 11 16 16 N 1.46494 * 109.47341 * 175.00293 * 15 13 12 17 17 C 1.34779 * 120.00116 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99624 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00002 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.46813 * 179.97438 * 19 17 16 21 21 O 1.42899 * 110.01641 * 63.61125 * 20 19 17 22 22 C 1.54265 * 110.03555 * 302.16631 * 20 19 17 23 23 C 1.54886 * 104.19632 * 217.10809 * 22 20 19 24 24 C 1.54890 * 102.74823 * 37.93916 * 23 22 20 25 25 C 1.53879 * 110.02824 * 184.99842 * 20 19 17 26 26 C 1.46922 * 120.62861 * 207.67459 * 9 7 2 27 27 H 0.97007 * 119.99736 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58974 * 6.61272 * 10 9 7 29 29 H 1.08995 * 109.58796 * 246.18274 * 10 9 7 30 30 H 1.09005 * 109.49978 * 294.68656 * 11 10 9 31 31 H 1.09001 * 109.49945 * 174.58708 * 11 10 9 32 32 H 1.09001 * 109.46366 * 178.61536 * 12 11 10 33 33 H 1.09000 * 109.44869 * 58.64898 * 12 11 10 34 34 H 1.09006 * 109.46808 * 295.00242 * 15 13 12 35 35 H 1.08996 * 109.47001 * 54.99383 * 15 13 12 36 36 H 0.96997 * 120.00035 * 359.97438 * 16 15 13 37 37 H 1.09001 * 109.46986 * 299.99809 * 19 17 16 38 38 H 1.09003 * 109.46960 * 59.99784 * 19 17 16 39 39 H 0.96697 * 114.00092 * 300.70075 * 21 20 19 40 40 H 1.08998 * 110.48389 * 335.78681 * 22 20 19 41 41 H 1.09001 * 110.48442 * 98.42750 * 22 20 19 42 42 H 1.08997 * 110.75547 * 279.62574 * 23 22 20 43 43 H 1.08997 * 110.91801 * 156.32910 * 23 22 20 44 44 H 1.09004 * 110.48696 * 203.37793 * 24 23 22 45 45 H 1.09008 * 110.59840 * 80.79732 * 24 23 22 46 46 H 1.08998 * 110.03143 * 238.56845 * 25 20 19 47 47 H 1.08998 * 110.03285 * 359.97438 * 25 20 19 48 48 H 1.09003 * 109.58836 * 113.82034 * 26 9 7 49 49 H 1.08995 * 109.58818 * 353.38937 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3531 10 6 0.2279 -2.3348 -1.2742 11 6 0.5011 -3.3048 -2.4279 12 6 0.8191 -4.6900 -1.8601 13 6 2.0746 -4.6100 -0.9886 14 1 2.9085 -4.2399 -1.5850 15 6 2.4105 -6.0013 -0.4479 16 7 3.6766 -5.9471 0.2869 17 6 4.1744 -7.0634 0.8550 18 8 3.5739 -8.1126 0.7582 19 6 5.4772 -7.0078 1.6105 20 6 5.8129 -8.3991 2.1513 21 8 6.0176 -9.3085 1.0682 22 6 4.6711 -8.9036 3.0576 23 6 5.3966 -9.6675 4.1929 24 6 6.6556 -8.7994 4.4389 25 6 7.0747 -8.3329 3.0295 26 6 1.8192 -3.6547 0.1814 27 1 -0.4850 0.8401 -0.0004 28 1 0.0986 -1.3265 -1.6675 29 1 -0.6743 -2.6413 -0.7450 30 1 1.3499 -2.9471 -3.0108 31 1 -0.3795 -3.3671 -3.0672 32 1 0.9898 -5.3881 -2.6796 33 1 -0.0201 -5.0363 -1.2569 34 1 1.6161 -6.3327 0.2209 35 1 2.5019 -6.7014 -1.2783 36 1 4.1571 -5.1081 0.3641 37 1 6.2713 -6.6762 0.9415 38 1 5.3859 -6.3078 2.4411 39 1 5.2531 -9.4023 0.4835 40 1 4.1066 -8.0639 3.4630 41 1 4.0139 -9.5751 2.5052 42 1 5.6759 -10.6695 3.8672 43 1 4.7776 -9.7128 5.0889 44 1 7.4467 -9.3950 4.8945 45 1 6.4138 -7.9427 5.0681 46 1 7.8428 -8.9951 2.6301 47 1 7.4481 -7.3096 3.0701 48 1 1.0467 -4.0689 0.8294 49 1 2.7398 -3.5173 0.7486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362210700.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:51 Heat of formation + Delta-G solvation = -114.463773 kcal Electronic energy + Delta-G solvation = -26605.095501 eV Core-core repulsion = 22951.389532 eV Total energy + Delta-G solvation = -3653.705969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39084 -39.78308 -38.93416 -36.25420 -35.67256 -34.66949 -32.50192 -32.28846 -31.27253 -29.66715 -27.49490 -27.19226 -25.78041 -23.82995 -22.58697 -21.89600 -21.56286 -20.74765 -20.52032 -18.71274 -18.05115 -17.58999 -16.93421 -16.81831 -16.65968 -16.29227 -16.00101 -15.74134 -15.48188 -15.06289 -14.62993 -14.50107 -14.37776 -14.05067 -14.01067 -13.73952 -13.56421 -13.39278 -13.01047 -12.90006 -12.88322 -12.51984 -12.35961 -12.23582 -12.02415 -11.97956 -11.94332 -11.82658 -11.59610 -11.58318 -11.44539 -11.33071 -11.10381 -10.82208 -10.70201 -10.54007 -10.04170 -8.68577 -7.86918 -5.32435 1.46595 1.49065 1.58888 1.63252 2.23500 2.51258 3.27747 3.28119 3.56335 3.60435 3.66307 3.85387 3.99053 4.00282 4.01513 4.10475 4.26902 4.35626 4.40762 4.54200 4.57592 4.58075 4.62389 4.72665 4.77037 4.83638 4.87948 4.90009 4.92994 5.00229 5.05436 5.06282 5.10009 5.16914 5.21323 5.23253 5.33062 5.37731 5.41861 5.48085 5.51032 5.57598 5.66940 5.77838 6.38822 6.54850 6.76898 7.14801 7.24593 7.86403 8.38270 9.19493 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.002899 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.992495 B = 9655.844024 C =10650.355321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.260 4.260 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.100 4.100 14 H 0.076 0.924 15 C 0.138 3.862 16 N -0.718 5.718 17 C 0.511 3.489 18 O -0.577 6.577 19 C -0.165 4.165 20 C 0.141 3.859 21 O -0.575 6.575 22 C -0.139 4.139 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.153 3.847 27 H 0.248 0.752 28 H 0.051 0.949 29 H -0.008 1.008 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.381 0.619 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.004 0.996 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 -15.888 3.321 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.390 4.390 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.121 4.121 14 H 0.095 0.905 15 C 0.014 3.986 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.458 6.458 19 C -0.205 4.205 20 C 0.100 3.900 21 O -0.385 6.385 22 C -0.177 4.177 23 C -0.164 4.164 24 C -0.158 4.158 25 C -0.151 4.151 26 C 0.028 3.972 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.022 0.978 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.555 -16.530 3.532 21.055 hybrid contribution -0.744 1.654 -0.238 1.829 sum 11.811 -14.876 3.294 19.278 Atomic orbital electron populations 1.70211 1.06814 1.25697 1.55599 1.25806 0.95981 1.01597 1.01472 0.85231 0.78861 0.79922 0.76575 1.18638 1.21986 1.22188 1.19588 0.93119 0.85919 1.40366 0.90997 1.44326 1.35835 1.02206 1.50919 1.20634 0.87689 0.97823 0.89215 1.22000 1.00917 0.95999 0.98008 1.21338 0.96624 0.96677 0.98906 1.21717 0.98951 0.93654 0.97765 0.90539 1.21228 0.85283 0.96489 0.95609 1.46083 1.24306 1.12149 1.54426 1.21079 0.87229 0.83183 0.78557 1.90618 1.62435 1.30854 1.61857 1.22601 0.94850 1.00676 1.02374 1.21708 0.95513 0.86219 0.86510 1.86410 1.44331 1.65797 1.41914 1.22965 0.97361 1.00226 0.97156 1.22509 0.97110 0.98741 0.98009 1.22374 0.97480 0.99907 0.96042 1.22215 0.95507 1.03228 0.94101 1.21021 0.97069 0.85666 0.93486 0.94240 0.93040 0.99040 0.92809 0.91364 0.90229 0.92784 0.92688 0.91033 0.75253 0.86480 0.85849 0.76800 0.91769 0.92208 0.92057 0.90925 0.90397 0.90341 0.90970 0.88827 0.97798 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.98 11.19 21.65 0.24 -54.74 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 3 Si 0.97 43.71 29.59 68.60 2.03 45.74 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.26 -13.72 9.59 84.03 0.81 -12.92 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -29.39 2.99 -699.11 -2.09 -31.48 16 10 C 0.17 8.16 5.31 86.36 0.46 8.62 16 11 C -0.13 -4.64 6.08 30.67 0.19 -4.46 16 12 C -0.10 -2.90 5.17 30.62 0.16 -2.74 16 13 C -0.10 -2.96 2.37 -10.72 -0.03 -2.99 16 14 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 15 C 0.14 3.51 5.07 86.38 0.44 3.95 16 16 N -0.72 -15.96 5.33 -463.07 -2.47 -18.43 16 17 C 0.51 11.63 7.31 87.66 0.64 12.27 16 18 O -0.58 -16.41 12.51 11.65 0.15 -16.27 16 19 C -0.17 -2.76 4.62 29.85 0.14 -2.63 16 20 C 0.14 2.73 0.98 -10.07 -0.01 2.72 16 21 O -0.58 -13.68 12.89 -134.30 -1.73 -15.42 16 22 C -0.14 -2.90 4.67 31.67 0.15 -2.75 16 23 C -0.13 -2.15 6.91 31.88 0.22 -1.93 16 24 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16 25 C -0.11 -1.72 6.27 31.32 0.20 -1.52 16 26 C 0.15 5.84 5.60 86.36 0.48 6.32 16 27 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.05 2.79 6.04 -2.39 -0.01 2.77 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 7.98 7.71 -92.71 -0.71 7.26 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.38 9.21 6.90 -74.06 -0.51 8.70 16 40 H 0.06 1.35 7.80 -2.39 -0.02 1.33 16 41 H 0.06 1.52 7.20 -2.39 -0.02 1.50 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.07 1.21 7.95 -2.39 -0.02 1.19 16 47 H 0.09 1.06 7.67 -2.39 -0.02 1.04 16 48 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.06 2.09 7.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.86 374.26 0.30 -65.56 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.29 Total: 27.01 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.47 Total: -1.98 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.32 Total: -104.65 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.59 Total: -31.68 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -65.86 0.30 -65.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362210700.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.905 kcal (2) G-P(sol) polarization free energy of solvation -65.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds