Wall clock time and date at job start Fri Apr 10 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48507 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47459 * 300.00321 * 3 2 1 6 6 H 1.48499 * 109.47139 * 60.00773 * 3 2 1 7 7 C 1.38814 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00179 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.69823 * 325.51355 * 10 9 7 12 12 C 1.53488 * 109.67625 * 204.99711 * 10 9 7 13 13 C 1.52449 * 109.20448 * 126.01465 * 12 10 9 14 14 C 1.53275 * 109.60214 * 43.92199 * 13 12 10 15 15 C 1.53425 * 109.31269 * 77.09340 * 14 13 12 16 16 C 1.53423 * 108.49862 * 287.65068 * 15 14 13 17 17 N 1.46071 * 110.10569 * 316.34868 * 16 15 14 18 18 C 1.34775 * 120.16559 * 293.03304 * 17 16 15 19 19 O 1.21281 * 120.00615 * 354.84344 * 18 17 16 20 20 C 1.50705 * 119.99706 * 174.83720 * 18 17 16 21 21 C 1.52999 * 109.47222 * 185.15695 * 20 18 17 22 22 H 1.08995 * 110.43735 * 303.91057 * 21 20 18 23 23 C 1.54809 * 110.48798 * 181.22005 * 21 20 18 24 24 C 1.54993 * 102.09508 * 220.44312 * 23 21 20 25 25 O 1.44387 * 103.48745 * 37.02513 * 24 23 21 26 26 C 1.43749 * 106.97625 * 319.94004 * 25 24 23 27 27 C 1.47124 * 119.65898 * 113.05634 * 17 16 15 28 28 H 0.97004 * 120.00315 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00128 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.52312 * 245.94859 * 12 10 9 31 31 H 1.08993 * 109.52471 * 6.07750 * 12 10 9 32 32 H 1.09004 * 109.43925 * 164.03468 * 13 12 10 33 33 H 1.09007 * 109.43160 * 283.90282 * 13 12 10 34 34 H 1.08990 * 109.51883 * 317.12959 * 14 13 12 35 35 H 1.08999 * 109.50633 * 197.04307 * 14 13 12 36 36 H 1.09005 * 109.63057 * 167.95416 * 15 14 13 37 37 H 1.08997 * 109.80012 * 47.45211 * 15 14 13 38 38 H 1.09000 * 109.37048 * 196.14969 * 16 15 14 39 39 H 1.09001 * 109.25951 * 76.47405 * 16 15 14 40 40 H 1.08999 * 109.47124 * 305.15962 * 20 18 17 41 41 H 1.09001 * 109.47260 * 65.15663 * 20 18 17 42 42 H 1.09007 * 110.90727 * 338.64418 * 23 21 20 43 43 H 1.09003 * 110.90777 * 102.24402 * 23 21 20 44 44 H 1.08994 * 110.61980 * 278.52541 * 24 23 21 45 45 H 1.08999 * 110.62135 * 155.52356 * 24 23 21 46 46 H 1.08996 * 109.87569 * 267.09036 * 26 25 24 47 47 H 1.08991 * 109.99993 * 146.00713 * 26 25 24 48 48 H 1.09002 * 109.84782 * 168.33413 * 27 17 16 49 49 H 1.09002 * 109.84771 * 47.34981 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 1 2.9747 -3.5518 -0.5819 12 6 1.1824 -4.7590 -0.6135 13 6 1.9454 -5.4338 -1.7477 14 6 3.3919 -5.6927 -1.3117 15 6 3.4306 -6.9111 -0.3800 16 6 2.8245 -6.5101 0.9712 17 7 3.3253 -5.1993 1.3769 18 6 4.6260 -5.0387 1.6910 19 8 5.3642 -6.0002 1.7280 20 6 5.1634 -3.6641 1.9960 21 6 6.6787 -3.7409 2.1925 22 1 6.9253 -4.4605 2.9732 23 6 7.2518 -2.3448 2.5377 24 6 8.5653 -2.3205 1.7153 25 8 8.2131 -3.0120 0.4977 26 6 7.3754 -4.1190 0.8710 27 6 2.4022 -4.0554 1.4415 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 0.9383 -5.4967 0.1509 31 1 0.2637 -4.3203 -1.0029 32 1 1.4649 -6.3803 -1.9955 33 1 1.9411 -4.7853 -2.6239 34 1 3.7752 -4.8192 -0.7844 35 1 4.0075 -5.8867 -2.1900 36 1 4.4630 -7.2306 -0.2379 37 1 2.8514 -7.7261 -0.8138 38 1 3.0974 -7.2500 1.7236 39 1 1.7390 -6.4701 0.8806 40 1 4.9380 -2.9936 1.1668 41 1 4.6977 -3.2857 2.9060 42 1 6.5745 -1.5550 2.2125 43 1 7.4593 -2.2625 3.6046 44 1 9.3581 -2.8511 2.2424 45 1 8.8651 -1.2947 1.5010 46 1 7.9836 -5.0119 1.0149 47 1 6.6294 -4.2995 0.0971 48 1 2.8827 -3.2204 1.9515 49 1 1.4946 -4.3418 1.9729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088285823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:40 Heat of formation + Delta-G solvation = -64.866090 kcal Electronic energy + Delta-G solvation = -28222.313449 eV Core-core repulsion = 24570.758196 eV Total energy + Delta-G solvation = -3651.555252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54021 -39.22505 -37.58841 -34.71226 -34.01851 -33.36458 -32.08898 -30.06483 -29.53784 -27.82437 -26.62302 -26.10570 -24.01008 -22.81213 -22.20290 -21.37071 -20.48248 -19.57230 -18.37720 -17.23512 -16.69219 -16.63852 -16.05539 -15.59748 -15.50333 -15.12844 -14.83078 -14.63990 -14.23522 -13.90019 -13.60519 -13.26524 -13.06731 -12.80902 -12.63195 -12.45300 -12.15698 -12.03858 -11.68329 -11.64797 -11.57846 -11.28282 -11.11637 -11.07628 -10.94956 -10.86655 -10.75138 -10.65606 -10.43231 -10.20057 -9.89936 -9.84048 -9.63487 -9.56084 -9.34909 -9.13743 -8.36204 -7.03513 -5.86434 -3.16050 2.85652 3.25954 3.37289 3.44407 3.45588 3.99842 4.43367 4.52672 4.65868 4.85353 4.90604 5.04241 5.13983 5.18064 5.18350 5.25952 5.30911 5.41131 5.46968 5.50081 5.57055 5.62656 5.67549 5.69301 5.72256 5.76052 5.84181 5.88480 5.91892 5.95328 6.03308 6.06060 6.06740 6.19846 6.21132 6.23125 6.33875 6.41976 6.53967 6.62434 6.69283 6.81797 6.93108 7.00519 7.60598 7.67860 8.31859 8.42416 9.43587 9.99759 10.33848 11.35746 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.006368 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.376057 B = 4395.788229 C = 6642.411618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.158 3.842 11 H 0.065 0.935 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.131 4.131 15 C -0.132 4.132 16 C 0.111 3.889 17 N -0.603 5.603 18 C 0.515 3.485 19 O -0.551 6.551 20 C -0.136 4.136 21 C -0.103 4.103 22 H 0.089 0.911 23 C -0.155 4.155 24 C 0.047 3.953 25 O -0.382 6.382 26 C 0.061 3.939 27 C 0.081 3.919 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -10.656 3.843 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.047 3.953 11 H 0.082 0.918 12 C -0.174 4.174 13 C -0.150 4.150 14 C -0.168 4.168 15 C -0.171 4.171 16 C -0.012 4.012 17 N -0.335 5.335 18 C 0.303 3.697 19 O -0.430 6.430 20 C -0.175 4.175 21 C -0.122 4.122 22 H 0.107 0.893 23 C -0.192 4.192 24 C -0.030 4.030 25 O -0.301 6.301 26 C -0.016 4.016 27 C -0.045 4.045 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.498 -10.953 3.632 14.946 hybrid contribution -0.200 0.963 0.279 1.022 sum 9.298 -9.990 3.911 14.197 Atomic orbital electron populations 1.69663 1.05132 1.25695 1.57242 1.24732 0.95455 0.97690 1.02637 0.86192 0.78972 0.84240 0.77265 1.20376 1.21818 1.21836 1.19253 0.90970 0.84033 1.43231 0.91130 1.42548 1.05756 0.99619 1.88024 1.21122 0.95450 0.86402 0.92350 0.91780 1.22246 0.99363 0.97902 0.97883 1.21494 0.95272 0.99760 0.98481 1.21996 0.96969 0.99076 0.98797 1.22063 1.01774 0.97906 0.95329 1.21595 0.99317 0.84363 0.95878 1.48136 1.08663 1.10613 1.66114 1.20605 0.81747 0.91052 0.76268 1.90633 1.57345 1.42002 1.53026 1.21826 0.95416 0.95585 1.04718 1.22280 0.94077 0.97145 0.98703 0.89305 1.23256 0.97671 0.97391 1.00906 1.23511 0.96131 0.97619 0.85717 1.88877 1.68728 1.43387 1.29117 1.23150 0.93228 0.89099 0.96114 1.23213 0.92631 0.86904 1.01702 0.93460 0.78115 0.91939 0.91424 0.92694 0.92172 0.90055 0.92934 0.91360 0.91546 0.92102 0.89388 0.88005 0.88543 0.89751 0.90166 0.92474 0.89102 0.92225 0.90046 0.89428 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.22 9.94 -15.06 -0.15 -6.37 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.34 16 9 N -0.72 -16.28 5.09 -52.87 -0.27 -16.55 16 10 C 0.16 2.78 2.40 -67.36 -0.16 2.62 16 11 H 0.06 1.22 5.40 -51.92 -0.28 0.94 16 12 C -0.14 -2.06 5.23 -26.76 -0.14 -2.20 16 13 C -0.11 -1.54 5.68 -26.87 -0.15 -1.69 16 14 C -0.13 -1.81 5.44 -26.37 -0.14 -1.95 16 15 C -0.13 -1.67 5.55 -26.29 -0.15 -1.82 16 16 C 0.11 1.43 5.12 -4.05 -0.02 1.41 16 17 N -0.60 -8.56 1.72 -172.88 -0.30 -8.85 16 18 C 0.51 7.68 6.26 -10.98 -0.07 7.62 16 19 O -0.55 -9.25 14.30 5.56 0.08 -9.17 16 20 C -0.14 -1.83 3.30 -27.88 -0.09 -1.92 16 21 C -0.10 -1.30 2.66 -89.09 -0.24 -1.53 16 22 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 23 C -0.15 -1.70 6.71 -24.73 -0.17 -1.87 16 24 C 0.05 0.53 7.72 38.21 0.29 0.83 16 25 O -0.38 -5.66 11.52 -35.23 -0.41 -6.06 16 26 C 0.06 0.85 6.42 37.73 0.24 1.09 16 27 C 0.08 1.25 5.37 -3.38 -0.02 1.24 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.38 9.40 7.52 -40.82 -0.31 9.10 16 30 H 0.06 0.84 4.48 -51.93 -0.23 0.61 16 31 H 0.07 1.12 7.61 -51.93 -0.40 0.72 16 32 H 0.05 0.66 7.86 -51.93 -0.41 0.25 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.28 3.68 -51.93 -0.19 1.08 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.96 7.39 -51.93 -0.38 0.57 16 37 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 38 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.09 1.04 5.06 -51.93 -0.26 0.78 16 40 H 0.10 1.50 7.98 -51.93 -0.41 1.09 16 41 H 0.10 1.19 7.64 -51.93 -0.40 0.80 16 42 H 0.08 1.00 7.87 -51.92 -0.41 0.59 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.23 7.32 -51.93 -0.38 0.85 16 48 H 0.09 1.43 6.09 -51.93 -0.32 1.12 16 49 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -29.22 362.64 -8.90 -38.12 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.11 Total: 11.51 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.05 Total: -4.88 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.16 Total: -51.35 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.33 Total: -15.24 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.22 -8.90 -38.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088285823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.748 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds