Wall clock time and date at job start Fri Apr 10 2020 22:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48507 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47459 * 300.00321 * 3 2 1 6 6 H 1.48499 * 109.47139 * 60.00773 * 3 2 1 7 7 C 1.38814 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00179 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.69823 * 325.51355 * 10 9 7 12 12 C 1.53488 * 109.67625 * 204.99711 * 10 9 7 13 13 C 1.52449 * 109.20448 * 126.01465 * 12 10 9 14 14 C 1.53275 * 109.60214 * 43.92199 * 13 12 10 15 15 C 1.53425 * 109.31269 * 77.09340 * 14 13 12 16 16 C 1.53423 * 108.49862 * 287.65068 * 15 14 13 17 17 N 1.46071 * 110.10569 * 316.34868 * 16 15 14 18 18 C 1.34775 * 120.16559 * 293.03304 * 17 16 15 19 19 O 1.21281 * 120.00615 * 354.84344 * 18 17 16 20 20 C 1.50705 * 119.99706 * 174.83720 * 18 17 16 21 21 C 1.52999 * 109.47222 * 185.15695 * 20 18 17 22 22 H 1.08995 * 110.43735 * 303.91057 * 21 20 18 23 23 C 1.54809 * 110.48798 * 181.22005 * 21 20 18 24 24 C 1.54993 * 102.09508 * 220.44312 * 23 21 20 25 25 O 1.44387 * 103.48745 * 37.02513 * 24 23 21 26 26 C 1.43749 * 106.97625 * 319.94004 * 25 24 23 27 27 C 1.47124 * 119.65898 * 113.05634 * 17 16 15 28 28 H 0.97004 * 120.00315 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00128 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.52312 * 245.94859 * 12 10 9 31 31 H 1.08993 * 109.52471 * 6.07750 * 12 10 9 32 32 H 1.09004 * 109.43925 * 164.03468 * 13 12 10 33 33 H 1.09007 * 109.43160 * 283.90282 * 13 12 10 34 34 H 1.08990 * 109.51883 * 317.12959 * 14 13 12 35 35 H 1.08999 * 109.50633 * 197.04307 * 14 13 12 36 36 H 1.09005 * 109.63057 * 167.95416 * 15 14 13 37 37 H 1.08997 * 109.80012 * 47.45211 * 15 14 13 38 38 H 1.09000 * 109.37048 * 196.14969 * 16 15 14 39 39 H 1.09001 * 109.25951 * 76.47405 * 16 15 14 40 40 H 1.08999 * 109.47124 * 305.15962 * 20 18 17 41 41 H 1.09001 * 109.47260 * 65.15663 * 20 18 17 42 42 H 1.09007 * 110.90727 * 338.64418 * 23 21 20 43 43 H 1.09003 * 110.90777 * 102.24402 * 23 21 20 44 44 H 1.08994 * 110.61980 * 278.52541 * 24 23 21 45 45 H 1.08999 * 110.62135 * 155.52356 * 24 23 21 46 46 H 1.08996 * 109.87569 * 267.09036 * 26 25 24 47 47 H 1.08991 * 109.99993 * 146.00713 * 26 25 24 48 48 H 1.09002 * 109.84782 * 168.33413 * 27 17 16 49 49 H 1.09002 * 109.84771 * 47.34981 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 1 2.9747 -3.5518 -0.5819 12 6 1.1824 -4.7590 -0.6135 13 6 1.9454 -5.4338 -1.7477 14 6 3.3919 -5.6927 -1.3117 15 6 3.4306 -6.9111 -0.3800 16 6 2.8245 -6.5101 0.9712 17 7 3.3253 -5.1993 1.3769 18 6 4.6260 -5.0387 1.6910 19 8 5.3642 -6.0002 1.7280 20 6 5.1634 -3.6641 1.9960 21 6 6.6787 -3.7409 2.1925 22 1 6.9253 -4.4605 2.9732 23 6 7.2518 -2.3448 2.5377 24 6 8.5653 -2.3205 1.7153 25 8 8.2131 -3.0120 0.4977 26 6 7.3754 -4.1190 0.8710 27 6 2.4022 -4.0554 1.4415 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 0.9383 -5.4967 0.1509 31 1 0.2637 -4.3203 -1.0029 32 1 1.4649 -6.3803 -1.9955 33 1 1.9411 -4.7853 -2.6239 34 1 3.7752 -4.8192 -0.7844 35 1 4.0075 -5.8867 -2.1900 36 1 4.4630 -7.2306 -0.2379 37 1 2.8514 -7.7261 -0.8138 38 1 3.0974 -7.2500 1.7236 39 1 1.7390 -6.4701 0.8806 40 1 4.9380 -2.9936 1.1668 41 1 4.6977 -3.2857 2.9060 42 1 6.5745 -1.5550 2.2125 43 1 7.4593 -2.2625 3.6046 44 1 9.3581 -2.8511 2.2424 45 1 8.8651 -1.2947 1.5010 46 1 7.9836 -5.0119 1.0149 47 1 6.6294 -4.2995 0.0971 48 1 2.8827 -3.2204 1.9515 49 1 1.4946 -4.3418 1.9729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088285823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:39 Heat of formation + Delta-G solvation = -81.654686 kcal Electronic energy + Delta-G solvation = -28223.041457 eV Core-core repulsion = 24570.758196 eV Total energy + Delta-G solvation = -3652.283260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72382 -40.29619 -38.85243 -36.29641 -35.22475 -34.49924 -33.73084 -31.36841 -30.79443 -29.02884 -27.92288 -27.27072 -25.74557 -23.94402 -23.40054 -22.57848 -21.57154 -20.81485 -19.60293 -19.08001 -17.83742 -17.73146 -17.25615 -16.84098 -16.68166 -16.38006 -16.15135 -15.84610 -15.57136 -15.37335 -15.07246 -14.71227 -14.26298 -13.89865 -13.83330 -13.61874 -13.51666 -13.19458 -13.07550 -12.86971 -12.84346 -12.60673 -12.57134 -12.32466 -12.21542 -12.12329 -12.08258 -11.87672 -11.76224 -11.63395 -11.56788 -11.13895 -11.00909 -10.85986 -10.68070 -10.51638 -9.70550 -8.87531 -7.91435 -5.18756 1.48092 1.50846 1.58584 1.65755 2.09196 2.58998 3.01770 3.37687 3.44127 3.60675 3.79063 3.85599 3.91144 4.04098 4.05448 4.11960 4.15694 4.25578 4.29625 4.36474 4.40846 4.46466 4.49500 4.61087 4.64250 4.66914 4.73243 4.78299 4.80813 4.85575 4.91072 4.94525 5.01288 5.04156 5.11209 5.13724 5.21984 5.24454 5.33529 5.41193 5.44248 5.56293 5.61692 5.75144 5.93112 6.30641 6.46376 7.22950 7.38491 8.13805 8.36372 9.31857 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.006368 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.376057 B = 4395.788229 C = 6642.411618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.074 0.926 9 N -0.728 5.728 10 C 0.157 3.843 11 H 0.051 0.949 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.128 4.128 15 C -0.124 4.124 16 C 0.107 3.893 17 N -0.599 5.599 18 C 0.513 3.487 19 O -0.569 6.569 20 C -0.132 4.132 21 C -0.098 4.098 22 H 0.093 0.907 23 C -0.149 4.149 24 C 0.040 3.960 25 O -0.408 6.408 26 C 0.063 3.937 27 C 0.094 3.906 28 H 0.249 0.751 29 H 0.374 0.626 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 -11.751 4.706 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.362 4.362 8 H 0.092 0.908 9 N -0.369 5.369 10 C 0.048 3.952 11 H 0.069 0.931 12 C -0.168 4.168 13 C -0.144 4.144 14 C -0.166 4.166 15 C -0.162 4.162 16 C -0.015 4.015 17 N -0.330 5.330 18 C 0.303 3.697 19 O -0.449 6.449 20 C -0.172 4.172 21 C -0.118 4.118 22 H 0.112 0.888 23 C -0.186 4.186 24 C -0.035 4.035 25 O -0.328 6.328 26 C -0.014 4.014 27 C -0.031 4.031 28 H 0.058 0.942 29 H 0.207 0.793 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.347 -12.090 4.500 16.537 hybrid contribution -0.384 1.203 -0.028 1.263 sum 9.963 -10.887 4.472 15.420 Atomic orbital electron populations 1.69793 1.06413 1.25746 1.59772 1.25383 0.96136 1.00516 1.04093 0.85296 0.78563 0.80860 0.76462 1.19024 1.22780 1.22103 1.19560 0.91241 0.85054 1.40352 0.90779 1.42699 1.05407 1.00642 1.88121 1.21280 0.94917 0.85342 0.93705 0.93084 1.22187 0.98270 0.97449 0.98847 1.21450 0.95172 1.00534 0.97214 1.21928 0.96893 0.98783 0.98977 1.22006 1.01351 0.97931 0.94938 1.21760 1.00152 0.83546 0.96070 1.48075 1.08314 1.10769 1.65877 1.20818 0.81739 0.91309 0.75859 1.90625 1.57673 1.42692 1.53912 1.21803 0.96287 0.94478 1.04607 1.22252 0.93203 0.98333 0.97968 0.88823 1.23251 0.97132 0.95835 1.02430 1.23763 0.96730 0.98298 0.84747 1.88844 1.68926 1.43786 1.31237 1.23074 0.92904 0.89155 0.96256 1.22854 0.93179 0.87288 0.99772 0.94181 0.79304 0.89622 0.92855 0.90036 0.93666 0.92277 0.92688 0.92875 0.88993 0.91725 0.87867 0.89577 0.87237 0.90674 0.87588 0.90669 0.87841 0.92278 0.91996 0.90280 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.39 13.06 21.65 0.28 -56.10 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.96 44.31 29.55 68.60 2.03 46.33 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.23 -11.76 9.94 84.03 0.84 -10.93 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -33.10 5.09 -321.17 -1.63 -34.74 16 10 C 0.16 5.44 2.40 45.37 0.11 5.55 16 11 H 0.05 1.94 5.40 -2.38 -0.01 1.93 16 12 C -0.13 -3.73 5.23 30.58 0.16 -3.57 16 13 C -0.11 -2.72 5.68 30.50 0.17 -2.55 16 14 C -0.13 -3.36 5.44 30.83 0.17 -3.20 16 15 C -0.12 -2.85 5.55 30.88 0.17 -2.68 16 16 C 0.11 2.48 5.12 86.60 0.44 2.92 16 17 N -0.60 -16.12 1.72 -819.26 -1.41 -17.53 16 18 C 0.51 14.86 6.26 87.66 0.55 15.41 16 19 O -0.57 -18.57 14.30 -3.03 -0.04 -18.61 16 20 C -0.13 -3.46 3.30 29.85 0.10 -3.36 16 21 C -0.10 -2.37 2.66 -9.80 -0.03 -2.39 16 22 H 0.09 2.18 7.95 -2.39 -0.02 2.16 16 23 C -0.15 -3.00 6.71 31.89 0.21 -2.79 16 24 C 0.04 0.85 7.72 72.66 0.56 1.41 16 25 O -0.41 -11.89 11.52 -148.98 -1.72 -13.61 16 26 C 0.06 1.75 6.42 72.35 0.46 2.21 16 27 C 0.09 2.82 5.37 86.47 0.46 3.28 16 28 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.37 18.50 7.52 -92.71 -0.70 17.80 16 30 H 0.09 2.06 4.48 -2.39 -0.01 2.05 16 31 H 0.05 1.72 7.61 -2.39 -0.02 1.70 16 32 H 0.08 1.69 7.86 -2.38 -0.02 1.67 16 33 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 1.83 3.68 -2.39 -0.01 1.82 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.41 7.39 -2.38 -0.02 1.39 16 37 H 0.09 1.67 7.90 -2.39 -0.02 1.66 16 38 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 39 H 0.10 2.08 5.06 -2.39 -0.01 2.07 16 40 H 0.09 2.55 7.98 -2.39 -0.02 2.53 16 41 H 0.11 2.56 7.64 -2.39 -0.02 2.54 16 42 H 0.07 1.67 7.87 -2.38 -0.02 1.65 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.93 7.32 -2.39 -0.02 1.91 16 48 H 0.08 2.52 6.09 -2.39 -0.01 2.51 16 49 H 0.08 2.22 7.97 -2.39 -0.02 2.21 16 Total: -1.00 -62.88 362.64 2.61 -60.27 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.25 Total: 37.94 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 4.85 Total: -3.96 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -2.76 Total: -108.37 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.76 Total: -32.22 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.88 2.61 -60.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088285823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.383 kcal (2) G-P(sol) polarization free energy of solvation -62.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds