Wall clock time and date at job start Fri Apr 10 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00116 * 2 1 4 4 H 1.48500 * 109.47379 * 270.00437 * 3 2 1 5 5 H 1.48495 * 109.47447 * 30.00550 * 3 2 1 6 6 H 1.48503 * 109.46835 * 150.00344 * 3 2 1 7 7 C 1.38813 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99906 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00250 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99929 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.63469 * 325.41245 * 10 9 7 12 12 C 1.53487 * 109.63788 * 205.00056 * 10 9 7 13 13 C 1.52475 * 109.14951 * 125.88609 * 12 10 9 14 14 C 1.53113 * 109.67089 * 43.92965 * 13 12 10 15 15 C 1.53437 * 109.34785 * 77.03128 * 14 13 12 16 16 C 1.53414 * 108.66655 * 287.55221 * 15 14 13 17 17 N 1.46197 * 110.05799 * 316.63777 * 16 15 14 18 18 C 1.34771 * 120.01955 * 292.73435 * 17 16 15 19 19 O 1.21286 * 119.99635 * 354.98225 * 18 17 16 20 20 C 1.50698 * 120.00353 * 174.98255 * 18 17 16 21 21 C 1.52993 * 109.47314 * 184.96681 * 20 18 17 22 22 H 1.09005 * 110.45925 * 52.39714 * 21 20 18 23 23 C 1.54506 * 110.51285 * 175.00026 * 21 20 18 24 24 C 1.54485 * 104.06309 * 118.64628 * 23 21 20 25 25 O 1.44422 * 104.80371 * 23.97855 * 24 23 21 26 26 C 1.44428 * 105.27705 * 319.49060 * 25 24 23 27 27 C 1.47136 * 119.79330 * 112.83907 * 17 16 15 28 28 H 0.97006 * 119.99663 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00221 * 0.02562 * 9 7 2 30 30 H 1.09008 * 109.52520 * 5.98477 * 12 10 9 31 31 H 1.08997 * 109.52703 * 245.79148 * 12 10 9 32 32 H 1.08995 * 109.43671 * 283.86695 * 13 12 10 33 33 H 1.09002 * 109.43411 * 163.98884 * 13 12 10 34 34 H 1.09002 * 109.49376 * 317.07161 * 14 13 12 35 35 H 1.08992 * 109.51232 * 197.00871 * 14 13 12 36 36 H 1.09002 * 109.63245 * 47.35864 * 15 14 13 37 37 H 1.08999 * 109.63191 * 167.74780 * 15 14 13 38 38 H 1.09007 * 109.35867 * 76.64084 * 16 15 14 39 39 H 1.08998 * 109.36118 * 196.23082 * 16 15 14 40 40 H 1.08996 * 109.47368 * 304.97170 * 20 18 17 41 41 H 1.09003 * 109.46730 * 64.96855 * 20 18 17 42 42 H 1.09003 * 110.51557 * 237.29065 * 23 21 20 43 43 H 1.09003 * 110.51001 * 359.86735 * 23 21 20 44 44 H 1.09001 * 110.36953 * 142.81000 * 24 23 21 45 45 H 1.09000 * 110.37116 * 265.04075 * 24 23 21 46 46 H 1.08994 * 110.36889 * 281.68160 * 26 25 24 47 47 H 1.08996 * 110.37278 * 159.34081 * 26 25 24 48 48 H 1.09009 * 109.84604 * 168.24793 * 27 17 16 49 49 H 1.08999 * 109.85126 * 47.25860 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9730 -3.5515 -0.5833 12 6 1.1812 -4.7586 -0.6115 13 6 1.9429 -5.4312 -1.7483 14 6 3.3892 -5.6901 -1.3174 15 6 3.4318 -6.9092 -0.3867 16 6 2.8331 -6.5131 0.9691 17 7 3.3313 -5.1992 1.3726 18 6 4.6329 -5.0376 1.6825 19 8 5.3722 -5.9985 1.7152 20 6 5.1697 -3.6631 1.9884 21 6 6.6851 -3.7393 2.1842 22 1 7.1542 -4.2387 1.3364 23 6 7.2781 -2.3254 2.3753 24 6 7.9057 -2.3692 3.7863 25 8 8.1716 -3.7679 4.0286 26 6 7.0246 -4.4701 3.5022 27 6 2.4070 -4.0564 1.4411 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 0.2616 -4.3197 -0.9987 31 1 0.9396 -5.4976 0.1525 32 1 1.9359 -4.7818 -2.6236 33 1 1.4632 -6.3781 -1.9960 34 1 3.7736 -4.8167 -0.7905 35 1 4.0024 -5.8828 -2.1976 36 1 2.8495 -7.7219 -0.8208 37 1 4.4645 -7.2305 -0.2512 38 1 1.7468 -6.4758 0.8874 39 1 3.1118 -7.2547 1.7177 40 1 4.9436 -2.9920 1.1598 41 1 4.7042 -3.2857 2.8989 42 1 8.0420 -2.1267 1.6236 43 1 6.4919 -1.5719 2.3281 44 1 8.8335 -1.7975 3.8068 45 1 7.2051 -1.9809 4.5255 46 1 6.1882 -4.4058 4.1980 47 1 7.2755 -5.5122 3.3044 48 1 2.8882 -3.2213 1.9504 49 1 1.5014 -4.3442 1.9751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088285824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:44 Heat of formation + Delta-G solvation = -81.734354 kcal Electronic energy + Delta-G solvation = -27996.889127 eV Core-core repulsion = 24344.602412 eV Total energy + Delta-G solvation = -3652.286715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69180 -40.29685 -38.83880 -36.28066 -35.22153 -34.51556 -33.72026 -31.34408 -30.70165 -29.04196 -27.91438 -27.22197 -25.71276 -23.95369 -23.53056 -22.56194 -21.46324 -20.80877 -19.64776 -19.08903 -18.05199 -17.28256 -17.17750 -16.96911 -16.55037 -16.29795 -16.21095 -16.01528 -15.55496 -15.34477 -14.88409 -14.62938 -14.51401 -14.09164 -13.79170 -13.65154 -13.39975 -13.11375 -13.06720 -12.84695 -12.81291 -12.60156 -12.58265 -12.27806 -12.17723 -12.14263 -12.10222 -11.88022 -11.71956 -11.55944 -11.54518 -11.12071 -10.98594 -10.83889 -10.77789 -10.54393 -9.69904 -8.86558 -7.89726 -5.17279 1.50655 1.51981 1.59108 1.67032 2.09010 2.60414 3.04095 3.40007 3.45916 3.69936 3.82113 3.87029 3.89750 4.05383 4.07417 4.12429 4.16680 4.19257 4.28892 4.33521 4.37572 4.46761 4.52954 4.57045 4.66356 4.70782 4.74844 4.80929 4.82906 4.87557 4.91148 4.93752 5.02002 5.09808 5.12854 5.14572 5.22232 5.25631 5.34309 5.42054 5.45155 5.57280 5.62682 5.75514 5.83529 6.31743 6.47499 7.24286 7.39667 8.15260 8.37626 9.33432 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009241 B = 0.005943 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.356212 B = 4710.176728 C = 7213.681446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.959 3.041 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.263 1.263 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.729 5.729 10 C 0.157 3.843 11 H 0.054 0.946 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.128 4.128 15 C -0.124 4.124 16 C 0.107 3.893 17 N -0.598 5.598 18 C 0.513 3.487 19 O -0.569 6.569 20 C -0.131 4.131 21 C -0.099 4.099 22 H 0.077 0.923 23 C -0.152 4.152 24 C 0.040 3.960 25 O -0.401 6.401 26 C 0.060 3.940 27 C 0.094 3.906 28 H 0.249 0.751 29 H 0.374 0.626 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.636 -10.746 3.236 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.789 3.211 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.188 1.188 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.369 5.369 10 C 0.048 3.952 11 H 0.072 0.928 12 C -0.168 4.168 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.162 4.162 16 C -0.015 4.015 17 N -0.330 5.330 18 C 0.302 3.698 19 O -0.450 6.450 20 C -0.170 4.170 21 C -0.118 4.118 22 H 0.095 0.905 23 C -0.189 4.189 24 C -0.036 4.036 25 O -0.320 6.320 26 C -0.017 4.017 27 C -0.031 4.031 28 H 0.057 0.943 29 H 0.206 0.794 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.338 -11.223 3.357 14.981 hybrid contribution -0.502 1.326 -0.270 1.444 sum 8.835 -9.897 3.086 13.621 Atomic orbital electron populations 1.69798 1.06506 1.25772 1.59750 1.25410 0.96123 1.00605 1.04122 0.85354 0.78202 0.80433 0.77124 1.22227 1.22816 1.18771 1.19559 0.91381 0.84952 1.40388 0.90404 1.42717 1.05411 1.00691 1.88120 1.21278 0.94976 0.85277 0.93645 0.92783 1.22188 0.98297 0.97485 0.98816 1.21422 0.95231 1.00486 0.97223 1.21899 0.96845 0.98779 0.98980 1.21998 1.01317 0.98013 0.94899 1.21758 1.00119 0.83527 0.96080 1.48107 1.08189 1.10730 1.66008 1.20839 0.81762 0.91356 0.75853 1.90627 1.57669 1.42804 1.53854 1.21812 0.95830 0.94642 1.04757 1.22193 0.93959 0.96521 0.99121 0.90469 1.23048 1.01421 0.96251 0.98211 1.23583 1.01777 0.82746 0.95525 1.89082 1.41769 1.19160 1.82003 1.23411 0.88311 0.96983 0.92964 1.22857 0.93101 0.87287 0.99840 0.94260 0.79383 0.92919 0.89796 0.93559 0.90229 0.92063 0.92566 0.89152 0.92893 0.87998 0.91833 0.88491 0.87756 0.89751 0.89338 0.87584 0.91435 0.92384 0.89568 0.90152 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.74 13.06 21.65 0.28 -55.46 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.96 43.15 29.55 68.60 2.03 45.17 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.23 -11.45 9.94 84.03 0.84 -10.61 16 8 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -32.32 5.09 -321.16 -1.64 -33.96 16 10 C 0.16 5.27 2.40 45.36 0.11 5.38 16 11 H 0.05 1.95 5.39 -2.39 -0.01 1.94 16 12 C -0.13 -3.64 5.24 30.58 0.16 -3.48 16 13 C -0.11 -2.62 5.67 30.46 0.17 -2.45 16 14 C -0.13 -3.20 5.44 30.78 0.17 -3.03 16 15 C -0.12 -2.78 5.54 30.88 0.17 -2.61 16 16 C 0.11 2.45 5.12 86.58 0.44 2.90 16 17 N -0.60 -15.72 1.72 -818.94 -1.41 -17.13 16 18 C 0.51 14.52 6.67 87.66 0.58 15.11 16 19 O -0.57 -18.50 13.96 -3.05 -0.04 -18.55 16 20 C -0.13 -3.29 3.29 29.84 0.10 -3.20 16 21 C -0.10 -2.41 2.71 -9.78 -0.03 -2.44 16 22 H 0.08 2.07 7.98 -2.38 -0.02 2.05 16 23 C -0.15 -3.14 6.74 31.61 0.21 -2.93 16 24 C 0.04 0.82 7.63 72.49 0.55 1.37 16 25 O -0.40 -10.70 11.65 -148.98 -1.74 -12.44 16 26 C 0.06 1.54 6.31 72.49 0.46 2.00 16 27 C 0.09 2.74 5.38 86.47 0.47 3.20 16 28 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 29 H 0.37 18.17 7.52 -92.71 -0.70 17.48 16 30 H 0.05 1.66 7.60 -2.38 -0.02 1.65 16 31 H 0.08 1.98 4.51 -2.39 -0.01 1.97 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.61 7.85 -2.39 -0.02 1.59 16 34 H 0.06 1.80 3.68 -2.39 -0.01 1.79 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.62 7.89 -2.39 -0.02 1.60 16 37 H 0.05 1.38 7.41 -2.39 -0.02 1.36 16 38 H 0.10 2.03 5.09 -2.38 -0.01 2.01 16 39 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 40 H 0.10 2.56 7.98 -2.39 -0.02 2.54 16 41 H 0.10 2.43 7.46 -2.39 -0.02 2.41 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 1.76 7.73 -2.39 -0.02 1.74 16 44 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 1.43 7.74 -2.39 -0.02 1.41 16 47 H 0.09 2.41 7.71 -2.39 -0.02 2.39 16 48 H 0.08 2.47 6.09 -2.38 -0.01 2.46 16 49 H 0.08 2.13 7.97 -2.39 -0.02 2.12 16 Total: -1.00 -60.99 362.43 2.61 -58.38 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.25 Total: 38.02 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.87 Total: -4.05 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -2.76 Total: -106.54 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.78 Total: -30.98 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -60.99 2.61 -58.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088285824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.350 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds