Wall clock time and date at job start Fri Apr 10 2020 22:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48505 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46844 * 299.99938 * 3 2 1 6 6 H 1.48494 * 109.47220 * 60.00130 * 3 2 1 7 7 C 1.38817 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99724 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.52241 * 34.87198 * 10 9 7 12 12 C 1.53805 * 109.52482 * 154.99605 * 10 9 7 13 13 C 1.52449 * 109.40539 * 197.73827 * 12 10 9 14 14 C 1.53956 * 110.73037 * 246.27543 * 13 12 10 15 15 C 1.52880 * 109.72892 * 44.36531 * 14 13 12 16 16 C 1.53443 * 109.38703 * 72.89795 * 15 14 13 17 17 N 1.45326 * 108.41252 * 282.27673 * 16 15 14 18 18 C 1.34779 * 120.36695 * 136.65849 * 17 16 15 19 19 O 1.21277 * 120.00147 * 184.60718 * 18 17 16 20 20 C 1.50698 * 120.00062 * 4.60940 * 18 17 16 21 21 H 1.09006 * 109.48013 * 40.50536 * 20 18 17 22 22 C 1.53089 * 109.47899 * 280.47679 * 20 18 17 23 23 C 1.53185 * 109.21379 * 182.43949 * 22 20 18 24 24 C 1.53181 * 109.03117 * 56.88766 * 23 22 20 25 25 C 1.53091 * 109.21179 * 303.11113 * 24 23 22 26 26 O 1.42900 * 109.48399 * 160.53356 * 20 18 17 27 27 C 1.46966 * 119.27123 * 316.92814 * 17 16 15 28 28 H 0.97005 * 120.00410 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00194 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47738 * 77.76181 * 12 10 9 31 31 H 1.08999 * 109.49479 * 317.72907 * 12 10 9 32 32 H 1.08995 * 109.22013 * 125.94851 * 13 12 10 33 33 H 1.08995 * 109.21952 * 6.59497 * 13 12 10 34 34 H 1.08994 * 109.42414 * 284.28254 * 14 13 12 35 35 H 1.08999 * 109.37862 * 164.41737 * 14 13 12 36 36 H 1.08998 * 109.48790 * 312.91673 * 15 14 13 37 37 H 1.09008 * 109.47845 * 192.86680 * 15 14 13 38 38 H 1.09003 * 109.67864 * 162.54244 * 16 15 14 39 39 H 1.09008 * 109.67626 * 42.00374 * 16 15 14 40 40 H 1.09006 * 109.52437 * 302.31235 * 22 20 18 41 41 H 1.09002 * 109.52344 * 62.43633 * 22 20 18 42 42 H 1.09000 * 109.49827 * 297.04853 * 23 22 20 43 43 H 1.09001 * 109.59900 * 176.77860 * 23 22 20 44 44 H 1.09004 * 109.51839 * 183.17898 * 24 23 22 45 45 H 1.08999 * 109.52213 * 63.05168 * 24 23 22 46 46 H 1.09002 * 109.48216 * 177.55951 * 25 24 23 47 47 H 1.08997 * 109.48426 * 297.58377 * 25 24 23 48 48 H 1.08997 * 109.53472 * 231.25560 * 27 17 16 49 49 H 1.09003 * 109.52763 * 351.48425 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9701 -3.5508 0.5868 12 6 1.1774 -4.7588 0.6122 13 6 2.0523 -5.9396 1.0175 14 6 1.7313 -7.1760 0.1583 15 6 1.6060 -6.7662 -1.3093 16 6 2.9989 -6.4526 -1.8712 17 7 3.3947 -5.1335 -1.4073 18 6 4.6473 -4.9160 -0.9598 19 8 4.9468 -3.8360 -0.4966 20 6 5.6757 -6.0150 -1.0351 21 1 5.5735 -6.5442 -1.9825 22 6 5.4623 -6.9940 0.1223 23 6 6.5475 -8.0742 0.0756 24 6 7.9232 -7.4026 0.1268 25 6 8.0416 -6.4078 -1.0308 26 8 6.9849 -5.4497 -0.9437 27 6 2.4123 -4.0405 -1.4258 28 1 -0.4851 0.8401 0.0004 29 1 0.3555 -2.3881 0.0002 30 1 0.4418 -5.0866 -0.1224 31 1 0.6643 -4.3679 1.4909 32 1 1.8736 -6.1752 2.0666 33 1 3.1004 -5.6720 0.8840 34 1 0.7922 -7.6163 0.4933 35 1 2.5325 -7.9074 0.2634 36 1 0.9747 -5.8811 -1.3870 37 1 1.1599 -7.5824 -1.8778 38 1 2.9663 -6.4640 -2.9607 39 1 3.7134 -7.1958 -1.5172 40 1 5.5241 -6.4577 1.0693 41 1 4.4805 -7.4585 0.0302 42 1 6.4540 -8.6440 -0.8489 43 1 6.4358 -8.7419 0.9298 44 1 8.7019 -8.1601 0.0371 45 1 8.0358 -6.8747 1.0738 46 1 9.0022 -5.8957 -0.9733 47 1 7.9707 -6.9422 -1.9781 48 1 2.8389 -3.1757 -1.9339 49 1 1.5143 -4.3667 -1.9506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088295939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:48 Heat of formation + Delta-G solvation = -65.658096 kcal Electronic energy + Delta-G solvation = -28383.307632 eV Core-core repulsion = 24731.718036 eV Total energy + Delta-G solvation = -3651.589596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73638 -39.01825 -37.19516 -35.05449 -33.92430 -33.74137 -32.18445 -31.47388 -29.62151 -27.65985 -26.36353 -25.35316 -24.20554 -23.53254 -22.56757 -20.86781 -20.57186 -19.88644 -18.70089 -17.29295 -16.92208 -16.59850 -16.00457 -15.84904 -15.26585 -14.97206 -14.57975 -14.43959 -14.31039 -14.01794 -13.62349 -13.55203 -13.29921 -12.93140 -12.82908 -12.70186 -12.36026 -12.17609 -11.92199 -11.64265 -11.54637 -11.36707 -11.23771 -10.98113 -10.90489 -10.76809 -10.69654 -10.63508 -10.39147 -10.19818 -10.01687 -9.79562 -9.66441 -9.51709 -9.12617 -8.92901 -8.18839 -6.85553 -5.66573 -2.94673 2.82387 2.98472 3.52637 3.58878 3.64262 3.93046 4.40424 4.53238 4.56194 4.66162 4.73107 4.74293 4.85446 4.87457 4.95073 5.05421 5.15847 5.27837 5.31369 5.32093 5.40222 5.43645 5.52464 5.62723 5.65086 5.67738 5.75471 5.76042 5.81827 5.83017 5.87382 5.97878 6.02573 6.07885 6.16598 6.22177 6.41003 6.48686 6.54420 6.72256 6.74248 6.93669 7.02877 7.26529 7.73708 7.92658 8.51790 8.54767 9.64478 10.19325 10.54789 11.56218 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.004576 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.619466 B = 6117.509503 C = 7370.375125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.720 5.720 10 C 0.162 3.838 11 H 0.065 0.935 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.151 4.151 16 C 0.101 3.899 17 N -0.602 5.602 18 C 0.514 3.486 19 O -0.501 6.501 20 C 0.076 3.924 21 H 0.075 0.925 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.159 4.159 25 C 0.059 3.941 26 O -0.353 6.353 27 C 0.101 3.899 28 H 0.253 0.747 29 H 0.383 0.617 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.074 0.926 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 -23.320 -3.131 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.211 4.211 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.360 5.360 10 C 0.051 3.949 11 H 0.083 0.917 12 C -0.168 4.168 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.188 4.188 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.299 3.701 19 O -0.374 6.374 20 C 0.015 3.985 21 H 0.092 0.908 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.196 4.196 25 C -0.018 4.018 26 O -0.271 6.271 27 C -0.023 4.023 28 H 0.062 0.938 29 H 0.216 0.784 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.992 -22.350 -2.839 24.646 hybrid contribution 0.051 0.498 -0.163 0.527 sum 10.043 -21.852 -3.003 24.236 Atomic orbital electron populations 1.69672 1.05061 1.25352 1.58567 1.24710 0.95464 0.97588 1.03292 0.86147 0.79191 0.84201 0.77015 1.20354 1.22007 1.21990 1.19428 0.91393 0.83856 1.41414 0.90660 1.42405 1.05639 0.99791 1.88188 1.20633 0.95307 0.85932 0.92988 0.91678 1.22093 0.98358 0.95334 1.01016 1.21699 1.00893 0.94664 0.98411 1.21746 1.01048 0.97575 0.94799 1.22339 0.97084 1.03022 0.96390 1.21692 0.97068 0.84898 0.98615 1.47852 1.10958 1.11015 1.63995 1.19966 0.82415 0.88699 0.79046 1.90792 1.78966 1.25453 1.42193 1.21946 0.84571 0.93260 0.98735 0.90756 1.22284 1.00092 0.96944 0.99588 1.21581 0.94265 0.97352 1.02476 1.22219 0.97658 0.99230 1.00534 1.22637 0.91045 0.91179 0.96907 1.88093 1.12471 1.32380 1.94181 1.22529 0.90194 0.87887 1.01640 0.93765 0.78373 0.91915 0.91840 0.92889 0.91819 0.92137 0.92534 0.89011 0.91271 0.92082 0.90346 0.90096 0.89733 0.91698 0.91004 0.90825 0.90734 0.88487 0.93230 0.90728 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.98 13.06 55.49 0.72 -28.25 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 23.71 29.55 -169.99 -5.02 18.68 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 7 C -0.23 -6.73 9.89 -15.06 -0.15 -6.88 16 8 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 9 N -0.72 -18.61 5.12 -53.61 -0.27 -18.89 16 10 C 0.16 3.38 2.38 -68.12 -0.16 3.22 16 11 H 0.07 1.56 5.99 -51.93 -0.31 1.25 16 12 C -0.13 -2.17 4.97 -26.59 -0.13 -2.30 16 13 C -0.12 -1.61 5.40 -26.51 -0.14 -1.76 16 14 C -0.11 -1.16 5.62 -26.29 -0.15 -1.31 16 15 C -0.15 -1.51 5.45 -26.56 -0.14 -1.65 16 16 C 0.10 1.05 5.48 -4.44 -0.02 1.03 16 17 N -0.60 -9.00 1.70 -174.68 -0.30 -9.29 16 18 C 0.51 8.74 5.49 -10.99 -0.06 8.68 16 19 O -0.50 -11.34 15.19 -13.55 -0.21 -11.54 16 20 C 0.08 0.98 2.20 -27.84 -0.06 0.92 16 21 H 0.07 0.78 7.25 -51.93 -0.38 0.41 16 22 C -0.15 -1.55 4.72 -26.59 -0.13 -1.68 16 23 C -0.12 -0.91 6.03 -26.54 -0.16 -1.07 16 24 C -0.16 -1.28 6.13 -26.59 -0.16 -1.44 16 25 C 0.06 0.57 6.84 37.20 0.25 0.83 16 26 O -0.35 -5.17 10.01 -54.34 -0.54 -5.72 16 27 C 0.10 1.87 4.73 -4.40 -0.02 1.85 16 28 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 30 H 0.06 0.96 5.47 -51.93 -0.28 0.68 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.96 4.99 -51.93 -0.26 0.70 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.49 6.50 -51.93 -0.34 0.15 16 36 H 0.09 1.11 3.35 -51.93 -0.17 0.93 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.67 4.07 -51.92 -0.21 0.46 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.75 4.70 -51.93 -0.24 0.51 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 1.65 8.09 -51.93 -0.42 1.23 16 49 H 0.07 1.22 6.06 -51.93 -0.31 0.90 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -34.71 354.93 -9.48 -44.19 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.87 Total: 7.60 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.34 Total: -2.12 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.15 Total: -56.43 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.75 Total: -17.26 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.71 -9.48 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.472 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds