Wall clock time and date at job start Fri Apr 10 2020 22:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48505 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46844 * 299.99938 * 3 2 1 6 6 H 1.48494 * 109.47220 * 60.00130 * 3 2 1 7 7 C 1.38817 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99724 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.52241 * 34.87198 * 10 9 7 12 12 C 1.53805 * 109.52482 * 154.99605 * 10 9 7 13 13 C 1.52449 * 109.40539 * 197.73827 * 12 10 9 14 14 C 1.53956 * 110.73037 * 246.27543 * 13 12 10 15 15 C 1.52880 * 109.72892 * 44.36531 * 14 13 12 16 16 C 1.53443 * 109.38703 * 72.89795 * 15 14 13 17 17 N 1.45326 * 108.41252 * 282.27673 * 16 15 14 18 18 C 1.34779 * 120.36695 * 136.65849 * 17 16 15 19 19 O 1.21277 * 120.00147 * 184.60718 * 18 17 16 20 20 C 1.50698 * 120.00062 * 4.60940 * 18 17 16 21 21 H 1.09006 * 109.48013 * 40.50536 * 20 18 17 22 22 C 1.53089 * 109.47899 * 280.47679 * 20 18 17 23 23 C 1.53185 * 109.21379 * 182.43949 * 22 20 18 24 24 C 1.53181 * 109.03117 * 56.88766 * 23 22 20 25 25 C 1.53091 * 109.21179 * 303.11113 * 24 23 22 26 26 O 1.42900 * 109.48399 * 160.53356 * 20 18 17 27 27 C 1.46966 * 119.27123 * 316.92814 * 17 16 15 28 28 H 0.97005 * 120.00410 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00194 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47738 * 77.76181 * 12 10 9 31 31 H 1.08999 * 109.49479 * 317.72907 * 12 10 9 32 32 H 1.08995 * 109.22013 * 125.94851 * 13 12 10 33 33 H 1.08995 * 109.21952 * 6.59497 * 13 12 10 34 34 H 1.08994 * 109.42414 * 284.28254 * 14 13 12 35 35 H 1.08999 * 109.37862 * 164.41737 * 14 13 12 36 36 H 1.08998 * 109.48790 * 312.91673 * 15 14 13 37 37 H 1.09008 * 109.47845 * 192.86680 * 15 14 13 38 38 H 1.09003 * 109.67864 * 162.54244 * 16 15 14 39 39 H 1.09008 * 109.67626 * 42.00374 * 16 15 14 40 40 H 1.09006 * 109.52437 * 302.31235 * 22 20 18 41 41 H 1.09002 * 109.52344 * 62.43633 * 22 20 18 42 42 H 1.09000 * 109.49827 * 297.04853 * 23 22 20 43 43 H 1.09001 * 109.59900 * 176.77860 * 23 22 20 44 44 H 1.09004 * 109.51839 * 183.17898 * 24 23 22 45 45 H 1.08999 * 109.52213 * 63.05168 * 24 23 22 46 46 H 1.09002 * 109.48216 * 177.55951 * 25 24 23 47 47 H 1.08997 * 109.48426 * 297.58377 * 25 24 23 48 48 H 1.08997 * 109.53472 * 231.25560 * 27 17 16 49 49 H 1.09003 * 109.52763 * 351.48425 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9701 -3.5508 0.5868 12 6 1.1774 -4.7588 0.6122 13 6 2.0523 -5.9396 1.0175 14 6 1.7313 -7.1760 0.1583 15 6 1.6060 -6.7662 -1.3093 16 6 2.9989 -6.4526 -1.8712 17 7 3.3947 -5.1335 -1.4073 18 6 4.6473 -4.9160 -0.9598 19 8 4.9468 -3.8360 -0.4966 20 6 5.6757 -6.0150 -1.0351 21 1 5.5735 -6.5442 -1.9825 22 6 5.4623 -6.9940 0.1223 23 6 6.5475 -8.0742 0.0756 24 6 7.9232 -7.4026 0.1268 25 6 8.0416 -6.4078 -1.0308 26 8 6.9849 -5.4497 -0.9437 27 6 2.4123 -4.0405 -1.4258 28 1 -0.4851 0.8401 0.0004 29 1 0.3555 -2.3881 0.0002 30 1 0.4418 -5.0866 -0.1224 31 1 0.6643 -4.3679 1.4909 32 1 1.8736 -6.1752 2.0666 33 1 3.1004 -5.6720 0.8840 34 1 0.7922 -7.6163 0.4933 35 1 2.5325 -7.9074 0.2634 36 1 0.9747 -5.8811 -1.3870 37 1 1.1599 -7.5824 -1.8778 38 1 2.9663 -6.4640 -2.9607 39 1 3.7134 -7.1958 -1.5172 40 1 5.5241 -6.4577 1.0693 41 1 4.4805 -7.4585 0.0302 42 1 6.4540 -8.6440 -0.8489 43 1 6.4358 -8.7419 0.9298 44 1 8.7019 -8.1601 0.0371 45 1 8.0358 -6.8747 1.0738 46 1 9.0022 -5.8957 -0.9733 47 1 7.9707 -6.9422 -1.9781 48 1 2.8389 -3.1757 -1.9339 49 1 1.5143 -4.3667 -1.9506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088295939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:47 Heat of formation + Delta-G solvation = -88.763419 kcal Electronic energy + Delta-G solvation = -28384.309554 eV Core-core repulsion = 24731.718036 eV Total energy + Delta-G solvation = -3652.591518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91683 -40.02843 -38.52211 -36.74598 -35.15954 -34.61563 -33.97633 -32.46019 -31.30091 -29.03444 -27.55613 -26.43439 -25.51341 -24.95584 -23.68941 -22.40989 -21.31068 -20.99608 -19.97301 -19.11997 -18.37930 -17.68750 -17.24768 -16.89515 -16.46549 -16.26856 -15.97549 -15.52666 -15.38726 -15.31414 -15.16931 -14.84799 -14.42433 -14.24147 -14.07832 -13.66129 -13.56844 -13.49932 -13.16583 -13.06614 -12.84048 -12.68526 -12.51756 -12.22153 -12.15872 -12.03765 -11.97454 -11.86852 -11.74300 -11.46450 -11.43290 -11.34409 -11.19117 -11.02596 -10.55317 -10.40357 -9.62704 -8.95000 -7.99108 -5.26561 1.39904 1.40073 1.52589 1.57229 1.80817 2.52282 2.98328 3.33284 3.45796 3.70042 3.77965 3.87244 3.93309 4.01244 4.01986 4.03454 4.10768 4.17648 4.19357 4.27374 4.43133 4.45072 4.50223 4.63043 4.63593 4.74430 4.76710 4.84230 4.85502 4.86507 4.95347 5.03511 5.07210 5.09255 5.16547 5.18342 5.27360 5.32982 5.37824 5.44175 5.48284 5.51059 5.57928 5.73284 6.15054 6.25953 6.54231 7.25253 7.31337 8.04633 8.31564 9.23848 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.004576 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.619466 B = 6117.509503 C = 7370.375125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.053 0.947 9 N -0.730 5.730 10 C 0.163 3.837 11 H 0.025 0.975 12 C -0.119 4.119 13 C -0.116 4.116 14 C -0.107 4.107 15 C -0.148 4.148 16 C 0.091 3.909 17 N -0.593 5.593 18 C 0.503 3.497 19 O -0.575 6.575 20 C 0.083 3.917 21 H 0.109 0.891 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.157 4.157 25 C 0.050 3.950 26 O -0.399 6.399 27 C 0.117 3.883 28 H 0.253 0.747 29 H 0.377 0.623 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 -27.571 -4.348 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.071 0.929 9 N -0.371 5.371 10 C 0.054 3.946 11 H 0.043 0.957 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.186 4.186 16 C -0.030 4.030 17 N -0.327 5.327 18 C 0.291 3.709 19 O -0.454 6.454 20 C 0.022 3.978 21 H 0.126 0.874 22 C -0.183 4.183 23 C -0.151 4.151 24 C -0.195 4.195 25 C -0.026 4.026 26 O -0.318 6.318 27 C -0.008 4.008 28 H 0.062 0.938 29 H 0.209 0.791 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.092 0.908 48 H 0.044 0.956 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.245 -26.692 -4.079 28.880 hybrid contribution 0.036 1.777 0.222 1.791 sum 10.281 -24.915 -3.857 27.228 Atomic orbital electron populations 1.69782 1.06026 1.25955 1.59656 1.25383 0.96385 1.00386 1.03745 0.85223 0.77678 0.80537 0.77285 1.20778 1.21132 1.21284 1.19448 0.90564 0.85704 1.40895 0.92914 1.42493 1.05353 1.00699 1.88540 1.20724 0.94103 0.85473 0.94329 0.95681 1.21991 0.98400 0.95037 1.00292 1.21665 0.98891 0.95098 0.99786 1.21754 1.02896 0.95854 0.93960 1.22332 0.96178 1.03293 0.96766 1.22153 0.98265 0.82470 1.00138 1.47828 1.09774 1.12022 1.63055 1.20987 0.83547 0.88915 0.77462 1.90755 1.80354 1.28726 1.45543 1.21996 0.82816 0.91603 1.01376 0.87352 1.22275 1.02381 0.96837 0.96835 1.21620 0.92380 0.96459 1.04621 1.22222 0.99230 0.99311 0.98736 1.22926 0.89721 0.91085 0.98831 1.88042 1.13903 1.35232 1.94654 1.21948 0.91583 0.88037 0.99214 0.93823 0.79096 0.89793 0.93994 0.92389 0.93693 0.90546 0.89786 0.91404 0.87453 0.89806 0.87460 0.93227 0.87801 0.88952 0.89381 0.87996 0.92802 0.88322 0.90813 0.95579 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.20 13.06 21.65 0.28 -60.92 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.96 50.53 29.55 68.60 2.03 52.56 16 4 H -0.28 -14.83 7.11 99.48 0.71 -14.12 16 5 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.23 -14.55 9.89 84.03 0.83 -13.72 16 8 H 0.05 3.46 7.83 -2.91 -0.02 3.44 16 9 N -0.73 -40.08 5.12 -323.54 -1.66 -41.74 16 10 C 0.16 7.22 2.38 44.87 0.11 7.33 16 11 H 0.03 1.32 5.99 -2.39 -0.01 1.30 16 12 C -0.12 -4.05 4.97 30.68 0.15 -3.89 16 13 C -0.12 -3.04 5.40 30.73 0.17 -2.87 16 14 C -0.11 -1.72 5.62 30.88 0.17 -1.55 16 15 C -0.15 -2.31 5.45 30.70 0.17 -2.14 16 16 C 0.09 1.55 5.48 86.75 0.48 2.02 16 17 N -0.59 -17.54 1.70 -824.96 -1.40 -18.94 16 18 C 0.50 17.66 5.49 87.66 0.48 18.14 16 19 O -0.58 -28.34 15.19 15.25 0.23 -28.11 16 20 C 0.08 2.03 2.20 29.88 0.07 2.09 16 21 H 0.11 1.87 7.25 -2.38 -0.02 1.85 16 22 C -0.15 -2.65 4.72 30.69 0.14 -2.51 16 23 C -0.11 -1.28 6.03 30.72 0.19 -1.09 16 24 C -0.16 -2.14 6.13 30.69 0.19 -1.95 16 25 C 0.05 0.89 6.84 72.01 0.49 1.38 16 26 O -0.40 -11.74 10.01 -130.71 -1.31 -13.05 16 27 C 0.12 4.51 4.73 85.90 0.41 4.91 16 28 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 29 H 0.38 21.25 7.80 -92.70 -0.72 20.52 16 30 H 0.08 2.49 5.47 -2.38 -0.01 2.47 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.36 4.99 -2.39 -0.01 1.35 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.95 6.50 -2.39 -0.02 0.94 16 36 H 0.07 1.42 3.35 -2.39 -0.01 1.42 16 37 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.24 4.07 -2.38 -0.01 1.23 16 40 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.10 1.41 4.70 -2.39 -0.01 1.40 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 48 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 49 H 0.10 3.26 6.06 -2.39 -0.01 3.25 16 Total: -1.00 -84.43 354.93 2.92 -81.52 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.24 Total: 26.17 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.50 Total: 2.51 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -2.77 Total: -121.60 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.08 Total: -41.16 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.03 Total: 52.56 kcal Total: -84.43 2.92 -81.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.247 kcal (2) G-P(sol) polarization free energy of solvation -84.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds