Wall clock time and date at job start Fri Apr 10 2020 22:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48494 * 109.47055 * 89.99770 * 3 2 1 5 5 H 1.48503 * 109.47055 * 210.00192 * 3 2 1 6 6 H 1.48504 * 109.46666 * 329.99780 * 3 2 1 7 7 C 1.38816 * 120.00245 * 179.71983 * 2 1 3 8 8 H 1.08000 * 119.99818 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00182 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99995 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.48118 * 325.00289 * 10 9 7 12 12 C 1.52878 * 109.48168 * 204.96988 * 10 9 7 13 13 C 1.53951 * 109.72894 * 167.14291 * 12 10 9 14 14 C 1.52445 * 110.71942 * 315.61286 * 13 12 10 15 15 C 1.53800 * 109.41019 * 113.74241 * 14 13 12 16 16 C 1.52336 * 109.15460 * 282.15821 * 15 14 13 17 17 N 1.46968 * 109.10583 * 72.69922 * 16 15 14 18 18 C 1.34777 * 120.36415 * 68.38722 * 17 16 15 19 19 O 1.21282 * 119.99801 * 355.03936 * 18 17 16 20 20 C 1.50696 * 120.00244 * 175.04999 * 18 17 16 21 21 H 1.09003 * 109.48122 * 51.67231 * 20 18 17 22 22 C 1.53091 * 109.47945 * 291.64832 * 20 18 17 23 23 C 1.53178 * 109.16734 * 182.40727 * 22 20 18 24 24 C 1.53179 * 109.03232 * 56.97747 * 23 22 20 25 25 C 1.53085 * 109.16728 * 303.01955 * 24 23 22 26 26 O 1.42906 * 109.48256 * 171.70571 * 20 18 17 27 27 C 1.45332 * 119.27102 * 248.35957 * 17 16 15 28 28 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99478 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.42967 * 287.20575 * 12 10 9 31 31 H 1.09004 * 109.42947 * 47.05085 * 12 10 9 32 32 H 1.09005 * 109.22013 * 195.29543 * 13 12 10 33 33 H 1.08998 * 109.20326 * 75.91656 * 13 12 10 34 34 H 1.08996 * 109.48336 * 353.75347 * 14 13 12 35 35 H 1.09008 * 109.47718 * 233.72287 * 14 13 12 36 36 H 1.08998 * 109.52499 * 162.25804 * 15 14 13 37 37 H 1.09000 * 109.57547 * 42.09505 * 15 14 13 38 38 H 1.08997 * 109.53143 * 312.81749 * 16 15 14 39 39 H 1.09001 * 109.59514 * 192.62429 * 16 15 14 40 40 H 1.09002 * 109.52154 * 302.31585 * 22 20 18 41 41 H 1.09003 * 109.52288 * 62.44207 * 22 20 18 42 42 H 1.08996 * 109.54337 * 176.85068 * 23 22 20 43 43 H 1.09005 * 109.53895 * 297.02595 * 23 22 20 44 44 H 1.08999 * 109.51956 * 62.93262 * 24 23 22 45 45 H 1.09001 * 109.51966 * 183.05291 * 24 23 22 46 46 H 1.08999 * 109.48479 * 177.58918 * 25 24 23 47 47 H 1.08997 * 109.48376 * 297.63274 * 25 24 23 48 48 H 1.08998 * 109.67938 * 283.61566 * 27 17 16 49 49 H 1.09007 * 109.67924 * 163.07593 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0059 8 1 1.4703 -2.1374 0.0100 9 7 3.3796 -1.2021 0.0053 10 6 4.1122 -2.4708 0.0110 11 1 3.5651 -3.2038 0.6040 12 6 5.4988 -2.2563 0.6179 13 6 6.1484 -3.6180 0.9242 14 6 5.1467 -4.5564 1.5874 15 6 4.8471 -5.7336 0.6440 16 6 3.8803 -5.2725 -0.4392 17 7 4.5936 -4.3969 -1.3797 18 6 5.5471 -4.8993 -2.1889 19 8 5.8839 -6.0595 -2.0817 20 6 6.1948 -4.0195 -3.2269 21 1 6.5540 -3.1048 -2.7552 22 6 5.1707 -3.6678 -4.3091 23 6 5.8518 -2.8238 -5.3908 24 6 7.0469 -3.6007 -5.9518 25 6 7.9986 -3.9549 -4.8062 26 8 7.2942 -4.7131 -3.8207 27 6 4.2591 -2.9834 -1.4278 28 1 -0.4850 0.8400 -0.0004 29 1 3.8645 -0.3621 0.0012 30 1 6.1226 -1.7079 -0.0880 31 1 5.4062 -1.6829 1.5402 32 1 6.9969 -3.4687 1.5920 33 1 6.4983 -4.0657 -0.0060 34 1 4.2244 -4.0145 1.7968 35 1 5.5656 -4.9352 2.5197 36 1 4.3974 -6.5491 1.2104 37 1 5.7733 -6.0773 0.1834 38 1 3.0569 -4.7232 0.0171 39 1 3.4892 -6.1387 -0.9729 40 1 4.7810 -4.5838 -4.7533 41 1 4.3520 -3.1012 -3.8655 42 1 5.1426 -2.6169 -6.1922 43 1 6.1965 -1.8849 -4.9575 44 1 6.6951 -4.5152 -6.4292 45 1 7.5699 -2.9855 -6.6840 46 1 8.8295 -4.5448 -5.1931 47 1 8.3814 -3.0394 -4.3553 48 1 3.3199 -2.8466 -1.9638 49 1 5.0540 -2.4351 -1.9334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088295940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:51 Heat of formation + Delta-G solvation = -67.131897 kcal Electronic energy + Delta-G solvation = -28371.971680 eV Core-core repulsion = 24720.318175 eV Total energy + Delta-G solvation = -3651.653505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73709 -39.05603 -37.39463 -34.74783 -34.34974 -33.60428 -32.42527 -31.49853 -30.30941 -27.59778 -26.36501 -25.47808 -24.12726 -23.45802 -22.29619 -21.45723 -20.52940 -19.70308 -18.83198 -17.69487 -17.11566 -16.61259 -15.88152 -15.86050 -15.33325 -14.85004 -14.75528 -14.35820 -14.25701 -14.04194 -13.83709 -13.66235 -13.30202 -12.86382 -12.79453 -12.65986 -12.63444 -12.45657 -11.94012 -11.69112 -11.54423 -11.47462 -11.26470 -11.15958 -10.99118 -10.86691 -10.75573 -10.57564 -10.44403 -10.33577 -10.30803 -9.88625 -9.69485 -9.62129 -9.37840 -8.99066 -8.28370 -7.38705 -5.87535 -3.24776 2.75621 2.89270 3.28992 3.32510 3.38618 3.90966 4.48277 4.49361 4.64542 4.65346 4.78995 4.81065 4.92878 5.00411 5.02030 5.11322 5.25200 5.29091 5.31714 5.37047 5.42043 5.53746 5.55243 5.62142 5.62889 5.72298 5.74268 5.77334 5.84438 5.84741 5.89966 5.94869 6.04738 6.10422 6.15017 6.18412 6.25643 6.30353 6.47322 6.55288 6.57518 6.69144 6.89008 7.02821 7.65710 7.86944 8.30765 8.37752 9.08546 9.81012 9.99762 11.30217 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.005160 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.920563 B = 5425.269202 C = 6733.306800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.159 3.841 11 H 0.079 0.921 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.127 4.127 15 C -0.138 4.138 16 C 0.118 3.882 17 N -0.594 5.594 18 C 0.521 3.479 19 O -0.529 6.529 20 C 0.075 3.925 21 H 0.081 0.919 22 C -0.149 4.149 23 C -0.121 4.121 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.356 6.356 27 C 0.079 3.921 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.318 -6.613 -6.433 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.049 3.951 11 H 0.096 0.904 12 C -0.166 4.166 13 C -0.152 4.152 14 C -0.164 4.164 15 C -0.176 4.176 16 C -0.004 4.004 17 N -0.328 5.328 18 C 0.308 3.692 19 O -0.405 6.405 20 C 0.014 3.986 21 H 0.098 0.902 22 C -0.187 4.187 23 C -0.158 4.158 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.274 6.274 27 C -0.047 4.047 28 H 0.071 0.929 29 H 0.195 0.805 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.271 -7.466 -6.311 17.298 hybrid contribution 0.443 1.767 -0.239 1.837 sum 14.713 -5.699 -6.550 17.084 Atomic orbital electron populations 1.69691 1.05138 1.25977 1.56846 1.24666 0.95171 0.97201 1.01636 0.86589 0.79180 0.85058 0.77869 1.21022 1.20312 1.21752 1.19036 0.80369 0.94715 1.43829 0.89129 1.42778 1.04065 1.01810 1.89924 1.20923 0.91682 0.89877 0.92574 0.90388 1.22075 0.96620 0.96827 1.01038 1.21650 0.97776 0.95393 1.00393 1.21836 1.00402 0.96370 0.97817 1.22057 1.01215 0.97687 0.96666 1.21541 0.94843 0.93858 0.90194 1.47755 1.37456 1.09979 1.37640 1.19983 0.79926 0.87899 0.81432 1.90664 1.61899 1.17744 1.70233 1.21913 0.88710 0.94679 0.93271 0.90181 1.22190 0.98470 1.01625 0.96440 1.21580 0.97467 0.98341 0.98436 1.22213 0.97462 1.01246 0.98608 1.22633 0.94215 0.96311 0.88580 1.88037 1.43476 1.40716 1.55182 1.22769 1.01118 0.78906 1.01866 0.92938 0.80528 0.92708 0.91519 0.92898 0.92176 0.90387 0.92550 0.91448 0.90365 0.88888 0.91488 0.90571 0.89338 0.90900 0.91465 0.90932 0.90810 0.88584 0.93137 0.90448 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 20.84 27.73 -169.99 -4.71 16.13 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.07 6.52 56.52 0.37 -5.71 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.44 10.37 -15.06 -0.16 -6.60 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.74 -15.76 4.93 -53.26 -0.26 -16.03 16 10 C 0.16 2.70 2.29 -67.76 -0.16 2.55 16 11 H 0.08 1.38 3.29 -51.93 -0.17 1.20 16 12 C -0.13 -1.86 5.22 -26.30 -0.14 -2.00 16 13 C -0.11 -1.53 5.40 -26.52 -0.14 -1.67 16 14 C -0.13 -1.66 5.49 -26.60 -0.15 -1.81 16 15 C -0.14 -1.84 5.54 -26.65 -0.15 -1.99 16 16 C 0.12 1.68 5.20 -4.13 -0.02 1.66 16 17 N -0.59 -8.77 1.68 -174.36 -0.29 -9.06 16 18 C 0.52 8.24 5.59 -10.99 -0.06 8.18 16 19 O -0.53 -10.00 15.09 -14.21 -0.21 -10.21 16 20 C 0.08 1.02 2.22 -27.84 -0.06 0.96 16 21 H 0.08 1.00 6.85 -51.93 -0.36 0.65 16 22 C -0.15 -1.80 5.16 -26.59 -0.14 -1.93 16 23 C -0.12 -1.18 6.03 -26.55 -0.16 -1.34 16 24 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 25 C 0.06 0.60 6.84 37.20 0.25 0.85 16 26 O -0.36 -5.09 9.95 -55.00 -0.55 -5.63 16 27 C 0.08 1.22 4.11 -4.44 -0.02 1.20 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.36 7.63 5.66 -40.82 -0.23 7.40 16 30 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.87 5.38 -51.93 -0.28 0.59 16 34 H 0.08 1.11 5.47 -51.93 -0.28 0.82 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.19 6.04 -51.93 -0.31 0.88 16 38 H 0.09 1.35 6.07 -51.93 -0.31 1.04 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.09 6.14 -51.93 -0.32 0.78 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.08 1.34 7.79 -51.93 -0.40 0.93 16 49 H 0.07 0.98 5.23 -51.93 -0.27 0.71 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -30.92 355.04 -9.27 -40.19 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.02 Total: 9.61 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.35 Total: -3.36 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.22 Total: -52.08 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.76 Total: -15.85 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.92 -9.27 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.941 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds