Wall clock time and date at job start Fri Apr 10 2020 22:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48494 * 109.47055 * 89.99770 * 3 2 1 5 5 H 1.48503 * 109.47055 * 210.00192 * 3 2 1 6 6 H 1.48504 * 109.46666 * 329.99780 * 3 2 1 7 7 C 1.38816 * 120.00245 * 179.71983 * 2 1 3 8 8 H 1.08000 * 119.99818 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00182 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99995 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.48118 * 325.00289 * 10 9 7 12 12 C 1.52878 * 109.48168 * 204.96988 * 10 9 7 13 13 C 1.53951 * 109.72894 * 167.14291 * 12 10 9 14 14 C 1.52445 * 110.71942 * 315.61286 * 13 12 10 15 15 C 1.53800 * 109.41019 * 113.74241 * 14 13 12 16 16 C 1.52336 * 109.15460 * 282.15821 * 15 14 13 17 17 N 1.46968 * 109.10583 * 72.69922 * 16 15 14 18 18 C 1.34777 * 120.36415 * 68.38722 * 17 16 15 19 19 O 1.21282 * 119.99801 * 355.03936 * 18 17 16 20 20 C 1.50696 * 120.00244 * 175.04999 * 18 17 16 21 21 H 1.09003 * 109.48122 * 51.67231 * 20 18 17 22 22 C 1.53091 * 109.47945 * 291.64832 * 20 18 17 23 23 C 1.53178 * 109.16734 * 182.40727 * 22 20 18 24 24 C 1.53179 * 109.03232 * 56.97747 * 23 22 20 25 25 C 1.53085 * 109.16728 * 303.01955 * 24 23 22 26 26 O 1.42906 * 109.48256 * 171.70571 * 20 18 17 27 27 C 1.45332 * 119.27102 * 248.35957 * 17 16 15 28 28 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99478 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.42967 * 287.20575 * 12 10 9 31 31 H 1.09004 * 109.42947 * 47.05085 * 12 10 9 32 32 H 1.09005 * 109.22013 * 195.29543 * 13 12 10 33 33 H 1.08998 * 109.20326 * 75.91656 * 13 12 10 34 34 H 1.08996 * 109.48336 * 353.75347 * 14 13 12 35 35 H 1.09008 * 109.47718 * 233.72287 * 14 13 12 36 36 H 1.08998 * 109.52499 * 162.25804 * 15 14 13 37 37 H 1.09000 * 109.57547 * 42.09505 * 15 14 13 38 38 H 1.08997 * 109.53143 * 312.81749 * 16 15 14 39 39 H 1.09001 * 109.59514 * 192.62429 * 16 15 14 40 40 H 1.09002 * 109.52154 * 302.31585 * 22 20 18 41 41 H 1.09003 * 109.52288 * 62.44207 * 22 20 18 42 42 H 1.08996 * 109.54337 * 176.85068 * 23 22 20 43 43 H 1.09005 * 109.53895 * 297.02595 * 23 22 20 44 44 H 1.08999 * 109.51956 * 62.93262 * 24 23 22 45 45 H 1.09001 * 109.51966 * 183.05291 * 24 23 22 46 46 H 1.08999 * 109.48479 * 177.58918 * 25 24 23 47 47 H 1.08997 * 109.48376 * 297.63274 * 25 24 23 48 48 H 1.08998 * 109.67938 * 283.61566 * 27 17 16 49 49 H 1.09007 * 109.67924 * 163.07593 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0059 8 1 1.4703 -2.1374 0.0100 9 7 3.3796 -1.2021 0.0053 10 6 4.1122 -2.4708 0.0110 11 1 3.5651 -3.2038 0.6040 12 6 5.4988 -2.2563 0.6179 13 6 6.1484 -3.6180 0.9242 14 6 5.1467 -4.5564 1.5874 15 6 4.8471 -5.7336 0.6440 16 6 3.8803 -5.2725 -0.4392 17 7 4.5936 -4.3969 -1.3797 18 6 5.5471 -4.8993 -2.1889 19 8 5.8839 -6.0595 -2.0817 20 6 6.1948 -4.0195 -3.2269 21 1 6.5540 -3.1048 -2.7552 22 6 5.1707 -3.6678 -4.3091 23 6 5.8518 -2.8238 -5.3908 24 6 7.0469 -3.6007 -5.9518 25 6 7.9986 -3.9549 -4.8062 26 8 7.2942 -4.7131 -3.8207 27 6 4.2591 -2.9834 -1.4278 28 1 -0.4850 0.8400 -0.0004 29 1 3.8645 -0.3621 0.0012 30 1 6.1226 -1.7079 -0.0880 31 1 5.4062 -1.6829 1.5402 32 1 6.9969 -3.4687 1.5920 33 1 6.4983 -4.0657 -0.0060 34 1 4.2244 -4.0145 1.7968 35 1 5.5656 -4.9352 2.5197 36 1 4.3974 -6.5491 1.2104 37 1 5.7733 -6.0773 0.1834 38 1 3.0569 -4.7232 0.0171 39 1 3.4892 -6.1387 -0.9729 40 1 4.7810 -4.5838 -4.7533 41 1 4.3520 -3.1012 -3.8655 42 1 5.1426 -2.6169 -6.1922 43 1 6.1965 -1.8849 -4.9575 44 1 6.6951 -4.5152 -6.4292 45 1 7.5699 -2.9855 -6.6840 46 1 8.8295 -4.5448 -5.1931 47 1 8.3814 -3.0394 -4.3553 48 1 3.3199 -2.8466 -1.9638 49 1 5.0540 -2.4351 -1.9334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088295940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:51 Heat of formation + Delta-G solvation = -85.025760 kcal Electronic energy + Delta-G solvation = -28372.747616 eV Core-core repulsion = 24720.318175 eV Total energy + Delta-G solvation = -3652.429441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92643 -40.08416 -38.69776 -36.33328 -35.50557 -34.53634 -34.05898 -32.70821 -31.75246 -28.95953 -27.53442 -26.59331 -25.30291 -24.78672 -23.53565 -22.81446 -21.39611 -20.98667 -20.06438 -19.54309 -18.30139 -17.74176 -17.17956 -16.87746 -16.55575 -16.23854 -15.87288 -15.67510 -15.39479 -15.14219 -15.08403 -14.83604 -14.63338 -14.35853 -14.07978 -13.90268 -13.71935 -13.66363 -13.26288 -13.11469 -12.85951 -12.64437 -12.50132 -12.27636 -12.14308 -12.11771 -11.96998 -11.88495 -11.77238 -11.56810 -11.46677 -11.40013 -11.22652 -10.96881 -10.55792 -10.45772 -9.63804 -9.21581 -7.97591 -5.31835 1.42352 1.45467 1.51287 1.52998 1.74902 2.52795 2.87577 3.34025 3.39944 3.64089 3.68168 3.75497 3.84001 3.97401 3.98970 4.01565 4.04032 4.14657 4.15970 4.24381 4.34096 4.45965 4.51791 4.53903 4.59131 4.66170 4.72667 4.76719 4.82620 4.83362 4.93322 4.98050 5.01601 5.05140 5.12176 5.12423 5.18844 5.29310 5.32048 5.34707 5.40130 5.45789 5.67740 5.83103 6.09543 6.24692 6.43271 7.10766 7.14105 7.86747 8.06026 9.23464 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.005160 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.920563 B = 5425.269202 C = 6733.306800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.245 1.245 6 H -0.302 1.302 7 C -0.224 4.224 8 H 0.059 0.941 9 N -0.744 5.744 10 C 0.155 3.845 11 H 0.070 0.930 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.129 4.129 16 C 0.113 3.887 17 N -0.588 5.588 18 C 0.519 3.481 19 O -0.563 6.563 20 C 0.079 3.921 21 H 0.095 0.905 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.153 4.153 25 C 0.051 3.949 26 O -0.385 6.385 27 C 0.092 3.908 28 H 0.256 0.744 29 H 0.367 0.633 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.154 -5.567 -6.900 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.251 4.251 3 Si 0.777 3.223 4 H -0.209 1.209 5 H -0.169 1.169 6 H -0.230 1.230 7 C -0.355 4.355 8 H 0.077 0.923 9 N -0.387 5.387 10 C 0.047 3.953 11 H 0.088 0.912 12 C -0.159 4.159 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.168 4.168 16 C -0.008 4.008 17 N -0.321 5.321 18 C 0.307 3.693 19 O -0.442 6.442 20 C 0.018 3.982 21 H 0.113 0.887 22 C -0.185 4.185 23 C -0.157 4.157 24 C -0.191 4.191 25 C -0.025 4.025 26 O -0.304 6.304 27 C -0.033 4.033 28 H 0.065 0.935 29 H 0.200 0.800 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.168 -6.443 -6.786 19.553 hybrid contribution -0.437 1.282 -0.094 1.358 sum 16.731 -5.161 -6.880 18.812 Atomic orbital electron populations 1.69875 1.07222 1.26519 1.59760 1.25426 0.95898 1.01031 1.02759 0.85507 0.78945 0.79991 0.77893 1.20947 1.16934 1.22956 1.18966 0.82361 0.93302 1.40908 0.92263 1.42720 1.02434 1.03613 1.89901 1.21106 0.92778 0.87985 0.93476 0.91208 1.22002 0.94948 0.97762 1.01150 1.21601 0.98176 0.94483 1.00346 1.21810 0.99913 0.96026 0.98409 1.21967 1.00097 0.98355 0.96336 1.21599 0.95066 0.93642 0.90536 1.47706 1.37170 1.09680 1.37579 1.20472 0.79541 0.87785 0.81517 1.90642 1.63030 1.19329 1.71218 1.21894 0.89040 0.94264 0.93016 0.88709 1.22164 0.98131 1.01373 0.96797 1.21611 0.97864 0.98303 0.97881 1.22194 0.97038 1.01204 0.98622 1.22922 0.94469 0.96907 0.88189 1.88003 1.43764 1.42259 1.56356 1.22497 1.00901 0.79397 1.00531 0.93531 0.79963 0.91148 0.91573 0.91103 0.93131 0.91579 0.90873 0.89952 0.91923 0.89501 0.91846 0.91981 0.89958 0.90032 0.90387 0.91796 0.88251 0.87198 0.91657 0.92568 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.35 13.97 21.65 0.30 -60.05 16 2 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 3 Si 0.95 42.51 27.73 68.60 1.90 44.42 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.25 -9.57 6.52 99.48 0.65 -8.92 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.22 -11.65 10.37 84.03 0.87 -10.78 16 8 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 9 N -0.74 -30.50 4.93 -322.42 -1.59 -32.09 16 10 C 0.15 5.05 2.29 45.10 0.10 5.16 16 11 H 0.07 2.44 3.29 -2.39 -0.01 2.43 16 12 C -0.12 -3.20 5.22 30.87 0.16 -3.04 16 13 C -0.11 -2.63 5.40 30.73 0.17 -2.46 16 14 C -0.12 -3.05 5.49 30.68 0.17 -2.88 16 15 C -0.13 -3.36 5.54 30.64 0.17 -3.19 16 16 C 0.11 3.26 5.20 86.07 0.45 3.71 16 17 N -0.59 -17.14 1.68 -823.94 -1.39 -18.52 16 18 C 0.52 16.15 5.59 87.66 0.49 16.64 16 19 O -0.56 -21.37 15.09 15.86 0.24 -21.13 16 20 C 0.08 2.02 2.22 29.88 0.07 2.09 16 21 H 0.10 2.12 6.85 -2.39 -0.02 2.11 16 22 C -0.15 -3.36 5.16 30.68 0.16 -3.20 16 23 C -0.12 -2.04 6.03 30.71 0.19 -1.85 16 24 C -0.15 -2.33 6.14 30.68 0.19 -2.14 16 25 C 0.05 0.90 6.84 72.01 0.49 1.39 16 26 O -0.38 -10.46 9.95 -130.08 -1.29 -11.75 16 27 C 0.09 2.75 4.11 86.75 0.36 3.10 16 28 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.37 14.43 5.66 -92.71 -0.52 13.90 16 30 H 0.07 1.67 7.87 -2.39 -0.02 1.65 16 31 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.35 5.38 -2.39 -0.01 1.34 16 34 H 0.07 1.81 5.47 -2.39 -0.01 1.79 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.87 6.04 -2.39 -0.01 1.86 16 38 H 0.09 2.59 6.07 -2.39 -0.01 2.58 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.96 6.14 -2.39 -0.01 1.94 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 46 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 1.94 7.79 -2.39 -0.02 1.92 16 49 H 0.09 2.33 5.23 -2.38 -0.01 2.31 16 Total: -1.00 -67.94 355.04 3.03 -64.91 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.37 Total: 34.50 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.49 Total: -0.28 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -2.67 Total: -110.66 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.06 Total: -32.88 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.90 Total: 44.42 kcal Total: -67.94 3.03 -64.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.117 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds