Wall clock time and date at job start Fri Apr 10 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48504 * 109.47409 * 269.99860 * 3 2 1 5 5 H 1.48502 * 109.47119 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.46907 * 150.00218 * 3 2 1 7 7 C 1.38811 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99663 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99885 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99604 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.48548 * 34.96751 * 10 9 7 12 12 C 1.52874 * 109.48460 * 154.99928 * 10 9 7 13 13 C 1.53956 * 109.72932 * 192.86066 * 12 10 9 14 14 C 1.52451 * 110.72206 * 44.36459 * 13 12 10 15 15 C 1.53803 * 109.40767 * 246.26208 * 14 13 12 16 16 C 1.52343 * 109.15756 * 77.84404 * 15 14 13 17 17 N 1.46961 * 109.09178 * 287.30741 * 16 15 14 18 18 C 1.34779 * 120.36587 * 291.61296 * 17 16 15 19 19 O 1.21277 * 119.99694 * 355.32875 * 18 17 16 20 20 C 1.50697 * 120.00008 * 175.33002 * 18 17 16 21 21 H 1.09006 * 109.48050 * 310.16421 * 20 18 17 22 22 C 1.53090 * 109.48273 * 70.18673 * 20 18 17 23 23 C 1.53177 * 109.16279 * 177.58873 * 22 20 18 24 24 C 1.53181 * 109.04046 * 303.02218 * 23 22 20 25 25 C 1.53096 * 109.16003 * 56.97747 * 24 23 22 26 26 O 1.42898 * 109.42681 * 302.40193 * 25 24 23 27 27 C 1.45339 * 119.27032 * 111.64033 * 17 16 15 28 28 H 0.97002 * 119.99743 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00155 * 0.27134 * 9 7 2 30 30 H 1.08997 * 109.42923 * 312.93948 * 12 10 9 31 31 H 1.09002 * 109.43169 * 72.83562 * 12 10 9 32 32 H 1.09005 * 109.22891 * 164.67989 * 13 12 10 33 33 H 1.08998 * 109.22827 * 284.08279 * 13 12 10 34 34 H 1.08997 * 109.48164 * 6.24853 * 14 13 12 35 35 H 1.08999 * 109.48196 * 126.27822 * 14 13 12 36 36 H 1.09002 * 109.52718 * 197.74503 * 15 14 13 37 37 H 1.08997 * 109.52376 * 317.87618 * 15 14 13 38 38 H 1.08998 * 109.53027 * 47.18706 * 16 15 14 39 39 H 1.09000 * 109.53403 * 167.34938 * 16 15 14 40 40 H 1.08992 * 109.52794 * 297.49551 * 22 20 18 41 41 H 1.09001 * 109.52118 * 57.62855 * 22 20 18 42 42 H 1.09003 * 109.54297 * 62.88825 * 23 22 20 43 43 H 1.09005 * 109.54667 * 183.06453 * 23 22 20 44 44 H 1.08997 * 109.52285 * 176.88287 * 24 23 22 45 45 H 1.09004 * 109.52072 * 297.07707 * 24 23 22 46 46 H 1.09011 * 109.47641 * 62.37738 * 25 24 23 47 47 H 1.08998 * 109.47480 * 182.39402 * 25 24 23 48 48 H 1.09000 * 109.67236 * 196.91536 * 27 17 16 49 49 H 1.08996 * 109.67794 * 76.38318 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5649 -3.2066 -0.5893 12 6 5.4985 -2.2592 -0.6085 13 6 6.1478 -3.6225 -0.9088 14 6 5.1455 -4.5642 -1.5666 15 6 4.8467 -5.7367 -0.6172 16 6 3.8807 -5.2704 0.4645 17 7 4.5948 -4.3901 1.3998 18 6 5.5492 -4.8884 2.2107 19 8 5.7641 -6.0817 2.2322 20 6 6.3490 -3.9626 3.0905 21 1 6.7341 -3.1360 2.4934 22 6 5.4521 -3.4142 4.2033 23 6 6.2864 -2.5223 5.1279 24 6 7.4634 -3.3343 5.6771 25 6 8.2826 -3.8859 4.5073 26 8 7.4403 -4.6806 3.6701 27 6 4.2603 -2.9763 1.4411 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0047 30 1 5.4054 -1.6904 -1.5336 31 1 6.1229 -1.7082 0.0947 32 1 6.9958 -3.4766 -1.5780 33 1 6.4983 -4.0662 0.0230 34 1 4.2232 -4.0233 -1.7780 35 1 5.5636 -4.9475 -2.4974 36 1 4.3967 -6.5550 -1.1793 37 1 5.7738 -6.0778 -0.1565 38 1 3.0568 -4.7234 0.0061 39 1 3.4903 -6.1347 1.0018 40 1 4.6439 -2.8290 3.7647 41 1 5.0334 -4.2423 4.7752 42 1 6.6636 -1.6672 4.5669 43 1 5.6667 -2.1720 5.9534 44 1 8.0936 -2.6921 6.2923 45 1 7.0862 -4.1609 6.2793 46 1 8.6931 -3.0581 3.9288 47 1 9.0971 -4.4999 4.8916 48 1 5.0557 -2.4256 1.9433 49 1 3.3217 -2.8368 1.9773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088295941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:55 Heat of formation + Delta-G solvation = -66.480729 kcal Electronic energy + Delta-G solvation = -28421.355075 eV Core-core repulsion = 24769.729806 eV Total energy + Delta-G solvation = -3651.625268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75867 -39.04565 -37.42086 -34.76438 -34.35514 -33.59874 -32.44941 -31.51371 -30.30526 -27.61682 -26.36190 -25.49495 -24.14776 -23.44693 -22.30576 -21.46625 -20.53892 -19.70280 -18.83227 -17.69679 -17.13649 -16.64461 -15.94879 -15.82084 -15.34188 -14.85227 -14.74793 -14.36666 -14.21553 -14.02933 -13.85880 -13.72643 -13.33433 -12.86262 -12.79600 -12.64949 -12.62020 -12.46422 -11.94024 -11.68013 -11.56186 -11.52530 -11.25599 -11.13341 -10.98889 -10.87563 -10.76612 -10.58977 -10.46033 -10.35412 -10.31834 -9.87633 -9.69725 -9.63363 -9.41342 -8.99968 -8.28238 -7.38703 -5.87506 -3.24817 2.74104 2.90668 3.28807 3.32279 3.38526 3.90890 4.47210 4.49230 4.64148 4.64833 4.78517 4.80975 4.92419 4.99454 5.00651 5.09300 5.24431 5.27878 5.31285 5.37215 5.39604 5.52906 5.54479 5.60888 5.62041 5.70650 5.73701 5.75625 5.83315 5.84488 5.89152 5.94958 6.03071 6.10279 6.13692 6.16313 6.22777 6.28361 6.46021 6.52625 6.56218 6.67918 6.87365 7.02615 7.65409 7.86946 8.30795 8.37604 9.08523 9.80932 9.99607 11.30245 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.005171 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.688070 B = 5412.996411 C = 6671.982102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.159 3.841 11 H 0.079 0.921 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.136 4.136 16 C 0.116 3.884 17 N -0.594 5.594 18 C 0.521 3.479 19 O -0.530 6.530 20 C 0.076 3.924 21 H 0.081 0.919 22 C -0.153 4.153 23 C -0.121 4.121 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.356 6.356 27 C 0.077 3.923 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -6.193 5.663 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.049 3.951 11 H 0.096 0.904 12 C -0.166 4.166 13 C -0.152 4.152 14 C -0.165 4.165 15 C -0.174 4.174 16 C -0.005 4.005 17 N -0.328 5.328 18 C 0.308 3.692 19 O -0.406 6.406 20 C 0.015 3.985 21 H 0.098 0.902 22 C -0.191 4.191 23 C -0.158 4.158 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.274 6.274 27 C -0.048 4.048 28 H 0.071 0.929 29 H 0.195 0.805 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.114 0.886 48 H 0.090 0.910 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.057 -7.073 5.624 17.560 hybrid contribution 0.493 1.776 0.209 1.855 sum 15.550 -5.297 5.833 17.432 Atomic orbital electron populations 1.69696 1.05139 1.25971 1.56841 1.24668 0.95174 0.97205 1.01636 0.86587 0.79171 0.85056 0.77859 1.21028 1.21754 1.20316 1.19035 0.80370 0.94719 1.43831 0.89128 1.42781 1.04066 1.01806 1.89925 1.20933 0.91670 0.89923 0.92579 0.90375 1.22077 0.96637 0.96772 1.01076 1.21658 0.97799 0.95413 1.00351 1.21845 1.00473 0.96357 0.97810 1.22037 1.00867 0.97768 0.96737 1.21531 0.94886 0.93967 0.90161 1.47760 1.37195 1.09956 1.37933 1.19983 0.80480 0.88584 0.80158 1.90669 1.67203 1.15736 1.66984 1.21898 0.88681 0.93713 0.94220 0.90167 1.22269 0.98903 1.00728 0.97177 1.21581 0.96895 0.97886 0.99459 1.22217 0.98046 1.00591 0.98677 1.22636 0.92625 0.95526 0.90953 1.88032 1.39159 1.35828 1.64380 1.22817 1.01176 0.78985 1.01868 0.92939 0.80530 0.91474 0.92704 0.92846 0.92277 0.90297 0.92501 0.91286 0.90891 0.88837 0.91324 0.89184 0.90506 0.91493 0.90880 0.90807 0.90913 0.93143 0.88573 0.90998 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.97 55.49 0.78 -27.00 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 20.82 27.74 -169.99 -4.72 16.11 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.06 6.51 56.52 0.37 -5.69 16 7 C -0.25 -6.44 10.37 -15.06 -0.16 -6.60 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.74 -15.71 4.93 -53.27 -0.26 -15.98 16 10 C 0.16 2.68 2.29 -67.77 -0.16 2.52 16 11 H 0.08 1.37 3.29 -51.93 -0.17 1.20 16 12 C -0.13 -1.83 5.22 -26.30 -0.14 -1.97 16 13 C -0.11 -1.49 5.41 -26.51 -0.14 -1.64 16 14 C -0.13 -1.64 5.49 -26.59 -0.15 -1.79 16 15 C -0.14 -1.79 5.56 -26.65 -0.15 -1.94 16 16 C 0.12 1.67 5.17 -4.13 -0.02 1.64 16 17 N -0.59 -8.81 1.68 -174.36 -0.29 -9.10 16 18 C 0.52 8.29 5.46 -10.99 -0.06 8.23 16 19 O -0.53 -10.11 15.47 -14.14 -0.22 -10.33 16 20 C 0.08 1.03 2.21 -27.84 -0.06 0.97 16 21 H 0.08 1.00 7.17 -51.93 -0.37 0.63 16 22 C -0.15 -1.85 5.06 -26.59 -0.13 -1.98 16 23 C -0.12 -1.18 6.03 -26.55 -0.16 -1.34 16 24 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 25 C 0.06 0.60 6.84 37.21 0.25 0.85 16 26 O -0.36 -5.09 9.96 -54.93 -0.55 -5.63 16 27 C 0.08 1.19 4.16 -4.44 -0.02 1.17 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.36 7.59 5.66 -40.82 -0.23 7.36 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.83 5.38 -51.93 -0.28 0.55 16 34 H 0.08 1.11 5.47 -51.93 -0.28 0.82 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.09 6.36 -51.93 -0.33 0.76 16 38 H 0.09 1.36 6.07 -51.93 -0.32 1.05 16 39 H 0.07 0.99 8.05 -51.93 -0.42 0.58 16 40 H 0.09 1.12 5.78 -51.93 -0.30 0.82 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.01 4.73 -51.93 -0.25 0.76 16 49 H 0.08 1.36 7.98 -51.93 -0.41 0.94 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -31.04 355.10 -9.27 -40.31 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.01 Total: 9.56 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.35 Total: -3.27 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.22 Total: -52.09 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.77 Total: -15.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.72 Total: 16.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.04 -9.27 -40.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.173 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds