Wall clock time and date at job start Fri Apr 10 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48504 * 109.47409 * 269.99860 * 3 2 1 5 5 H 1.48502 * 109.47119 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.46907 * 150.00218 * 3 2 1 7 7 C 1.38811 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99663 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99885 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99604 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.48548 * 34.96751 * 10 9 7 12 12 C 1.52874 * 109.48460 * 154.99928 * 10 9 7 13 13 C 1.53956 * 109.72932 * 192.86066 * 12 10 9 14 14 C 1.52451 * 110.72206 * 44.36459 * 13 12 10 15 15 C 1.53803 * 109.40767 * 246.26208 * 14 13 12 16 16 C 1.52343 * 109.15756 * 77.84404 * 15 14 13 17 17 N 1.46961 * 109.09178 * 287.30741 * 16 15 14 18 18 C 1.34779 * 120.36587 * 291.61296 * 17 16 15 19 19 O 1.21277 * 119.99694 * 355.32875 * 18 17 16 20 20 C 1.50697 * 120.00008 * 175.33002 * 18 17 16 21 21 H 1.09006 * 109.48050 * 310.16421 * 20 18 17 22 22 C 1.53090 * 109.48273 * 70.18673 * 20 18 17 23 23 C 1.53177 * 109.16279 * 177.58873 * 22 20 18 24 24 C 1.53181 * 109.04046 * 303.02218 * 23 22 20 25 25 C 1.53096 * 109.16003 * 56.97747 * 24 23 22 26 26 O 1.42898 * 109.42681 * 302.40193 * 25 24 23 27 27 C 1.45339 * 119.27032 * 111.64033 * 17 16 15 28 28 H 0.97002 * 119.99743 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00155 * 0.27134 * 9 7 2 30 30 H 1.08997 * 109.42923 * 312.93948 * 12 10 9 31 31 H 1.09002 * 109.43169 * 72.83562 * 12 10 9 32 32 H 1.09005 * 109.22891 * 164.67989 * 13 12 10 33 33 H 1.08998 * 109.22827 * 284.08279 * 13 12 10 34 34 H 1.08997 * 109.48164 * 6.24853 * 14 13 12 35 35 H 1.08999 * 109.48196 * 126.27822 * 14 13 12 36 36 H 1.09002 * 109.52718 * 197.74503 * 15 14 13 37 37 H 1.08997 * 109.52376 * 317.87618 * 15 14 13 38 38 H 1.08998 * 109.53027 * 47.18706 * 16 15 14 39 39 H 1.09000 * 109.53403 * 167.34938 * 16 15 14 40 40 H 1.08992 * 109.52794 * 297.49551 * 22 20 18 41 41 H 1.09001 * 109.52118 * 57.62855 * 22 20 18 42 42 H 1.09003 * 109.54297 * 62.88825 * 23 22 20 43 43 H 1.09005 * 109.54667 * 183.06453 * 23 22 20 44 44 H 1.08997 * 109.52285 * 176.88287 * 24 23 22 45 45 H 1.09004 * 109.52072 * 297.07707 * 24 23 22 46 46 H 1.09011 * 109.47641 * 62.37738 * 25 24 23 47 47 H 1.08998 * 109.47480 * 182.39402 * 25 24 23 48 48 H 1.09000 * 109.67236 * 196.91536 * 27 17 16 49 49 H 1.08996 * 109.67794 * 76.38318 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5649 -3.2066 -0.5893 12 6 5.4985 -2.2592 -0.6085 13 6 6.1478 -3.6225 -0.9088 14 6 5.1455 -4.5642 -1.5666 15 6 4.8467 -5.7367 -0.6172 16 6 3.8807 -5.2704 0.4645 17 7 4.5948 -4.3901 1.3998 18 6 5.5492 -4.8884 2.2107 19 8 5.7641 -6.0817 2.2322 20 6 6.3490 -3.9626 3.0905 21 1 6.7341 -3.1360 2.4934 22 6 5.4521 -3.4142 4.2033 23 6 6.2864 -2.5223 5.1279 24 6 7.4634 -3.3343 5.6771 25 6 8.2826 -3.8859 4.5073 26 8 7.4403 -4.6806 3.6701 27 6 4.2603 -2.9763 1.4411 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0047 30 1 5.4054 -1.6904 -1.5336 31 1 6.1229 -1.7082 0.0947 32 1 6.9958 -3.4766 -1.5780 33 1 6.4983 -4.0662 0.0230 34 1 4.2232 -4.0233 -1.7780 35 1 5.5636 -4.9475 -2.4974 36 1 4.3967 -6.5550 -1.1793 37 1 5.7738 -6.0778 -0.1565 38 1 3.0568 -4.7234 0.0061 39 1 3.4903 -6.1347 1.0018 40 1 4.6439 -2.8290 3.7647 41 1 5.0334 -4.2423 4.7752 42 1 6.6636 -1.6672 4.5669 43 1 5.6667 -2.1720 5.9534 44 1 8.0936 -2.6921 6.2923 45 1 7.0862 -4.1609 6.2793 46 1 8.6931 -3.0581 3.9288 47 1 9.0971 -4.4999 4.8916 48 1 5.0557 -2.4256 1.9433 49 1 3.3217 -2.8368 1.9773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088295941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:55 Heat of formation + Delta-G solvation = -84.579783 kcal Electronic energy + Delta-G solvation = -28422.139908 eV Core-core repulsion = 24769.729806 eV Total energy + Delta-G solvation = -3652.410102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94827 -40.07071 -38.72409 -36.34654 -35.50199 -34.53628 -34.06662 -32.73625 -31.73916 -28.97677 -27.52241 -26.60776 -25.32224 -24.77452 -23.53924 -22.80830 -21.40793 -20.97168 -20.06675 -19.54246 -18.32597 -17.77065 -17.16020 -16.92763 -16.57455 -16.22869 -15.82656 -15.67737 -15.39101 -15.15905 -15.05900 -14.84758 -14.67697 -14.37804 -14.07776 -13.90251 -13.69347 -13.66039 -13.26411 -13.10545 -12.84786 -12.64888 -12.52495 -12.27126 -12.14832 -12.09735 -11.96716 -11.89138 -11.77380 -11.56889 -11.47401 -11.40524 -11.21845 -10.95842 -10.58705 -10.48032 -9.64012 -9.21556 -7.97626 -5.31919 1.42332 1.45615 1.50349 1.52939 1.74974 2.52893 2.87528 3.33742 3.38917 3.64492 3.68392 3.74816 3.84244 3.97755 3.99035 4.01569 4.03512 4.14357 4.15722 4.23528 4.33304 4.46139 4.50233 4.52440 4.59186 4.66123 4.72922 4.76904 4.82142 4.83260 4.92441 4.97787 5.01449 5.05205 5.11327 5.12452 5.18369 5.28724 5.32000 5.35005 5.40129 5.45456 5.66358 5.83011 6.09639 6.24688 6.42533 7.10431 7.13705 7.86805 8.06162 9.23477 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.005171 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.688070 B = 5412.996411 C = 6671.982102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.060 4.060 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.244 1.244 7 C -0.225 4.225 8 H 0.058 0.942 9 N -0.744 5.744 10 C 0.155 3.845 11 H 0.070 0.930 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.127 4.127 16 C 0.112 3.888 17 N -0.589 5.589 18 C 0.519 3.481 19 O -0.566 6.566 20 C 0.080 3.920 21 H 0.097 0.903 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.153 4.153 25 C 0.051 3.949 26 O -0.385 6.385 27 C 0.090 3.910 28 H 0.256 0.744 29 H 0.367 0.633 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.286 -5.032 5.940 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.252 4.252 3 Si 0.777 3.223 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.168 1.168 7 C -0.356 4.356 8 H 0.076 0.924 9 N -0.387 5.387 10 C 0.046 3.954 11 H 0.088 0.912 12 C -0.159 4.159 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.322 5.322 18 C 0.307 3.693 19 O -0.445 6.445 20 C 0.019 3.981 21 H 0.115 0.885 22 C -0.189 4.189 23 C -0.156 4.156 24 C -0.191 4.191 25 C -0.025 4.025 26 O -0.304 6.304 27 C -0.035 4.035 28 H 0.065 0.935 29 H 0.201 0.799 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.128 0.872 48 H 0.111 0.889 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.219 -5.934 5.906 20.051 hybrid contribution -0.475 1.252 0.127 1.345 sum 17.744 -4.683 6.033 19.318 Atomic orbital electron populations 1.69884 1.07256 1.26521 1.59768 1.25439 0.95910 1.01085 1.02746 0.85495 0.78953 0.79905 0.77914 1.20901 1.22999 1.16848 1.18963 0.82406 0.93277 1.40918 0.92350 1.42720 1.02405 1.03641 1.89890 1.21119 0.92878 0.87994 0.93401 0.91239 1.22005 0.94862 0.97791 1.01202 1.21614 0.98192 0.94432 1.00402 1.21819 0.99996 0.95999 0.98406 1.21950 0.99738 0.98477 0.96343 1.21590 0.95193 0.93657 0.90527 1.47722 1.36945 1.09675 1.37826 1.20500 0.80288 0.88532 0.79973 1.90646 1.68315 1.17400 1.68106 1.21878 0.88740 0.93146 0.94341 0.88543 1.22244 0.98922 1.00556 0.97136 1.21613 0.96978 0.97738 0.99312 1.22199 0.97913 1.00567 0.98404 1.22928 0.92508 0.96056 0.90998 1.87999 1.39629 1.37515 1.65262 1.22551 1.00885 0.79467 1.00612 0.93539 0.79926 0.91519 0.91006 0.90929 0.93082 0.91562 0.90756 0.89797 0.92315 0.89479 0.91948 0.89760 0.92045 0.90267 0.90026 0.88214 0.91863 0.91562 0.87209 0.88852 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.51 13.97 21.65 0.30 -60.21 16 2 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 3 Si 0.95 42.46 27.74 68.60 1.90 44.37 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.24 -9.48 6.51 99.48 0.65 -8.83 16 7 C -0.22 -11.68 10.37 84.03 0.87 -10.81 16 8 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 9 N -0.74 -30.40 4.93 -322.44 -1.59 -31.99 16 10 C 0.15 5.01 2.29 45.10 0.10 5.11 16 11 H 0.07 2.42 3.29 -2.39 -0.01 2.41 16 12 C -0.12 -3.12 5.22 30.88 0.16 -2.96 16 13 C -0.11 -2.55 5.41 30.74 0.17 -2.38 16 14 C -0.12 -2.99 5.49 30.68 0.17 -2.82 16 15 C -0.13 -3.25 5.56 30.65 0.17 -3.08 16 16 C 0.11 3.25 5.17 86.07 0.45 3.69 16 17 N -0.59 -17.27 1.68 -823.95 -1.39 -18.66 16 18 C 0.52 16.27 5.46 87.66 0.48 16.75 16 19 O -0.57 -21.76 15.47 15.81 0.24 -21.52 16 20 C 0.08 2.04 2.21 29.88 0.07 2.11 16 21 H 0.10 2.12 7.17 -2.38 -0.02 2.11 16 22 C -0.15 -3.44 5.06 30.68 0.16 -3.29 16 23 C -0.12 -2.01 6.03 30.71 0.19 -1.82 16 24 C -0.15 -2.32 6.14 30.69 0.19 -2.13 16 25 C 0.05 0.89 6.84 72.01 0.49 1.38 16 26 O -0.39 -10.43 9.96 -130.15 -1.30 -11.73 16 27 C 0.09 2.70 4.16 86.74 0.36 3.06 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.37 14.34 5.66 -92.71 -0.52 13.82 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.64 7.87 -2.39 -0.02 1.62 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.05 1.31 5.38 -2.39 -0.01 1.29 16 34 H 0.07 1.78 5.47 -2.39 -0.01 1.77 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.71 6.36 -2.39 -0.02 1.70 16 38 H 0.09 2.62 6.07 -2.39 -0.01 2.60 16 39 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 40 H 0.08 1.99 5.78 -2.39 -0.01 1.98 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.09 2.39 4.73 -2.39 -0.01 2.38 16 49 H 0.05 1.90 7.98 -2.39 -0.02 1.89 16 Total: -1.00 -68.61 355.10 3.03 -65.58 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.37 Total: 34.22 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 4.48 Total: -0.06 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -2.67 Total: -110.86 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.05 Total: -33.25 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.90 Total: 44.37 kcal Total: -68.61 3.03 -65.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.995 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds