Wall clock time and date at job start Fri Apr 10 2020 22:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48503 * 109.47365 * 270.00222 * 3 2 1 5 5 H 1.48502 * 109.47104 * 29.99758 * 3 2 1 6 6 H 1.48494 * 109.47217 * 149.99714 * 3 2 1 7 7 C 1.38810 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99697 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99644 * 180.02562 * 7 2 1 10 10 C 1.45904 * 119.99661 * 179.97438 * 9 7 2 11 11 H 1.10807 * 107.32697 * 327.51303 * 10 9 7 12 12 C 1.52581 * 112.38770 * 209.28269 * 10 9 7 13 13 C 1.51643 * 112.16008 * 343.90424 * 12 10 9 14 14 C 1.52629 * 111.77989 * 293.95001 * 13 12 10 15 15 C 1.52514 * 110.96799 * 303.60914 * 14 13 12 16 16 C 1.52218 * 112.64096 * 81.20964 * 15 14 13 17 17 N 1.45390 * 114.63510 * 20.03267 * 16 15 14 18 18 C 1.35415 * 119.98853 * 76.55233 * 17 16 15 19 19 O 1.21279 * 120.00060 * 175.58276 * 18 17 16 20 20 C 1.50700 * 119.99673 * 355.59561 * 18 17 16 21 21 H 1.09001 * 109.48076 * 321.03231 * 20 18 17 22 22 C 1.53090 * 109.48530 * 81.07396 * 20 18 17 23 23 C 1.53180 * 109.16270 * 177.59038 * 22 20 18 24 24 C 1.53174 * 109.03480 * 303.01866 * 23 22 20 25 25 C 1.53095 * 109.16429 * 56.98213 * 24 23 22 26 26 O 1.42899 * 109.41475 * 302.38904 * 25 24 23 27 27 C 1.46827 * 120.51079 * 252.83895 * 17 16 15 28 28 H 0.96992 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00181 * 0.02562 * 9 7 2 30 30 H 1.10164 * 108.57552 * 103.79102 * 12 10 9 31 31 H 1.09010 * 110.32502 * 220.68344 * 12 10 9 32 32 H 1.09035 * 110.57100 * 56.86664 * 13 12 10 33 33 H 1.09981 * 108.67395 * 174.29342 * 13 12 10 34 34 H 1.10518 * 107.78580 * 185.46786 * 14 13 12 35 35 H 1.08076 * 111.11145 * 68.84688 * 14 13 12 36 36 H 1.09884 * 109.07281 * 319.74521 * 15 14 13 37 37 H 1.09812 * 109.18136 * 202.92465 * 15 14 13 38 38 H 1.10295 * 108.38363 * 140.64277 * 16 15 14 39 39 H 1.09460 * 109.83815 * 256.38210 * 16 15 14 40 40 H 1.08997 * 109.51805 * 297.49625 * 22 20 18 41 41 H 1.09000 * 109.52268 * 57.68315 * 22 20 18 42 42 H 1.09004 * 109.54036 * 183.15234 * 23 22 20 43 43 H 1.08997 * 109.61748 * 62.92723 * 23 22 20 44 44 H 1.09009 * 109.52355 * 297.07375 * 24 23 22 45 45 H 1.09004 * 109.57396 * 176.92213 * 24 23 22 46 46 H 1.09002 * 109.47607 * 182.40549 * 25 24 23 47 47 H 1.08999 * 109.48910 * 62.38190 * 25 24 23 48 48 H 1.09594 * 109.20747 * 198.05092 * 27 17 16 49 49 H 1.09541 * 109.30714 * 316.20504 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1092 -2.4656 0.0000 11 1 3.5013 -3.1977 0.5677 12 6 5.4652 -2.3538 0.6906 13 6 5.9029 -0.9119 0.8615 14 6 6.1722 -0.2388 -0.4816 15 6 7.2112 -1.0161 -1.2830 16 6 6.6145 -2.2116 -2.0122 17 7 5.1747 -2.1475 -2.2042 18 6 4.6549 -1.3461 -3.1640 19 8 3.4612 -1.3524 -3.3783 20 6 5.5597 -0.4467 -3.9661 21 1 6.3284 -0.0304 -3.3150 22 6 6.2211 -1.2547 -5.0856 23 6 7.0918 -0.3214 -5.9324 24 6 6.2230 0.8183 -6.4733 25 6 5.5615 1.5463 -5.3002 26 8 4.7922 0.6153 -4.5364 27 6 4.2791 -3.0067 -1.4197 28 1 -0.4849 0.8400 -0.0004 29 1 3.8646 -0.3620 0.0011 30 1 5.3906 -2.8169 1.6874 31 1 6.2196 -2.9123 0.1364 32 1 5.1540 -0.3477 1.4180 33 1 6.8302 -0.8931 1.4525 34 1 6.5792 0.7685 -0.2788 35 1 5.2559 -0.0983 -1.0372 36 1 8.0018 -1.3641 -0.6038 37 1 7.6824 -0.3430 -2.0115 38 1 7.0866 -2.2837 -3.0064 39 1 6.8702 -3.1350 -1.4830 40 1 6.8423 -2.0379 -4.6512 41 1 5.4520 -1.7046 -5.7133 42 1 7.5215 -0.8790 -6.7647 43 1 7.8921 0.0905 -5.3176 44 1 5.4538 0.4102 -7.1292 45 1 6.8447 1.5178 -7.0323 46 1 4.9084 2.3313 -5.6814 47 1 6.3303 1.9888 -4.6667 48 1 3.3018 -3.0549 -1.9134 49 1 4.6923 -4.0204 -1.3804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088295942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:58 Heat of formation + Delta-G solvation = -87.915962 kcal Electronic energy + Delta-G solvation = -29236.701485 eV Core-core repulsion = 25584.146715 eV Total energy + Delta-G solvation = -3652.554770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73019 -39.98800 -38.64133 -36.51952 -35.07738 -34.58603 -34.09452 -32.43658 -31.50695 -29.17302 -27.88767 -26.77327 -25.43405 -24.95092 -23.60160 -21.89699 -21.28356 -21.08619 -20.04922 -19.48409 -18.11799 -17.60356 -17.01178 -16.88057 -16.58858 -16.25693 -16.08732 -15.68946 -15.64598 -15.27435 -15.19339 -14.65642 -14.54530 -14.40709 -14.11889 -13.64360 -13.59648 -13.43796 -13.09116 -13.05546 -12.80679 -12.60975 -12.49956 -12.40298 -12.22706 -12.15288 -11.95217 -11.90241 -11.81115 -11.51474 -11.43793 -11.13228 -11.09168 -10.85913 -10.57991 -10.36619 -9.75240 -9.02169 -8.03746 -5.30416 1.17997 1.30087 1.31763 1.60736 1.97870 2.43083 2.99470 3.28950 3.47083 3.69667 3.74179 3.83094 3.94153 3.94917 3.98947 4.00059 4.09582 4.13205 4.16027 4.29561 4.39230 4.39595 4.52752 4.56420 4.59505 4.72034 4.81545 4.81593 4.85806 4.91156 4.95682 5.02600 5.04989 5.10279 5.11813 5.14451 5.17242 5.24245 5.34639 5.44956 5.50731 5.57266 5.78382 5.80630 6.15195 6.23175 6.58606 7.12094 7.37850 7.93668 8.06657 9.19488 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.006635 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.584500 B = 4218.958620 C = 5153.609129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.937 3.063 4 H -0.300 1.300 5 H -0.290 1.290 6 H -0.248 1.248 7 C -0.205 4.205 8 H 0.054 0.946 9 N -0.737 5.737 10 C 0.156 3.844 11 H 0.043 0.957 12 C -0.112 4.112 13 C -0.113 4.113 14 C -0.129 4.129 15 C -0.128 4.128 16 C 0.089 3.911 17 N -0.586 5.586 18 C 0.504 3.496 19 O -0.571 6.571 20 C 0.075 3.925 21 H 0.103 0.897 22 C -0.141 4.141 23 C -0.113 4.113 24 C -0.154 4.154 25 C 0.046 3.954 26 O -0.405 6.405 27 C 0.097 3.903 28 H 0.253 0.747 29 H 0.366 0.634 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.028 0.972 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.037 0.963 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.421 -3.375 -8.263 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.256 4.256 3 Si 0.766 3.234 4 H -0.227 1.227 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.337 4.337 8 H 0.072 0.928 9 N -0.381 5.381 10 C 0.046 3.954 11 H 0.061 0.939 12 C -0.150 4.150 13 C -0.150 4.150 14 C -0.167 4.167 15 C -0.166 4.166 16 C -0.032 4.032 17 N -0.319 5.319 18 C 0.292 3.708 19 O -0.448 6.448 20 C 0.014 3.986 21 H 0.120 0.880 22 C -0.178 4.178 23 C -0.150 4.150 24 C -0.192 4.192 25 C -0.030 4.030 26 O -0.325 6.325 27 C -0.028 4.028 28 H 0.062 0.938 29 H 0.203 0.797 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 27.417 -3.447 -8.292 28.850 hybrid contribution -1.010 1.373 -0.063 1.706 sum 26.407 -2.074 -8.355 27.774 Atomic orbital electron populations 1.69859 1.06803 1.25927 1.61289 1.25292 0.95957 1.00497 1.03896 0.85672 0.79221 0.81457 0.77018 1.22736 1.21649 1.17284 1.19023 0.83164 0.92937 1.38570 0.92777 1.42755 1.01867 1.04316 1.89143 1.20839 0.93620 0.87338 0.93564 0.93907 1.21619 0.95283 0.97004 1.01058 1.21185 1.01154 0.96068 0.96644 1.21497 0.99043 0.99302 0.96824 1.21936 0.97647 0.97075 0.99944 1.21865 0.77870 1.00661 1.02840 1.47520 1.08137 1.41838 1.34447 1.21052 0.88224 0.81072 0.80496 1.90765 1.18762 1.67141 1.68165 1.22176 0.92268 0.88636 0.95499 0.88003 1.22193 0.99833 0.99333 0.96482 1.21611 0.97283 0.95866 1.00218 1.22203 1.00002 0.99280 0.97673 1.22929 0.96024 0.91153 0.92852 1.88077 1.36398 1.38567 1.69444 1.22436 0.93815 0.93315 0.93224 0.93836 0.79735 0.91658 0.87780 0.95295 0.89371 0.92791 0.95245 0.87264 0.90364 0.89194 0.86833 0.87328 0.92967 0.88848 0.89219 0.92533 0.87887 0.88946 0.91376 0.94434 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -69.72 13.97 21.65 0.30 -69.42 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.94 52.18 27.74 68.60 1.90 54.08 16 4 H -0.30 -17.50 7.11 99.48 0.71 -16.80 16 5 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 6 H -0.25 -12.29 6.52 99.48 0.65 -11.64 16 7 C -0.21 -12.84 10.36 84.03 0.87 -11.97 16 8 H 0.05 3.68 8.05 -2.91 -0.02 3.65 16 9 N -0.74 -36.73 4.37 -322.91 -1.41 -38.14 16 10 C 0.16 5.86 2.69 44.92 0.12 5.98 16 11 H 0.04 1.72 8.11 -1.41 -0.01 1.71 16 12 C -0.11 -2.87 5.04 30.01 0.15 -2.72 16 13 C -0.11 -3.03 4.74 30.03 0.14 -2.89 16 14 C -0.13 -3.42 4.75 30.31 0.14 -3.28 16 15 C -0.13 -1.97 4.53 30.17 0.14 -1.84 16 16 C 0.09 1.49 4.33 86.33 0.37 1.86 16 17 N -0.59 -17.65 1.73 -820.53 -1.42 -19.07 16 18 C 0.50 19.58 5.80 87.56 0.51 20.09 16 19 O -0.57 -30.95 15.96 15.11 0.24 -30.71 16 20 C 0.07 2.20 2.30 29.88 0.07 2.27 16 21 H 0.10 2.43 5.37 -2.39 -0.01 2.41 16 22 C -0.14 -2.85 5.24 30.68 0.16 -2.69 16 23 C -0.11 -1.52 6.03 30.71 0.19 -1.34 16 24 C -0.15 -2.62 6.14 30.68 0.19 -2.44 16 25 C 0.05 1.11 6.84 72.01 0.49 1.60 16 26 O -0.41 -14.86 10.03 -130.85 -1.31 -16.18 16 27 C 0.10 3.37 5.41 86.28 0.47 3.84 16 28 H 0.25 17.12 8.31 -92.71 -0.77 16.35 16 29 H 0.37 17.98 1.80 -92.71 -0.17 17.81 16 30 H 0.06 1.56 8.24 -1.76 -0.01 1.54 16 31 H 0.10 1.82 4.83 -2.38 -0.01 1.81 16 32 H 0.03 1.00 7.13 -2.37 -0.02 0.99 16 33 H 0.09 1.72 8.22 -1.86 -0.02 1.70 16 34 H 0.05 1.34 8.27 -1.57 -0.01 1.33 16 35 H 0.03 1.08 4.40 -2.87 -0.01 1.07 16 36 H 0.11 0.99 8.08 -1.92 -0.02 0.98 16 37 H 0.08 0.94 7.01 -1.95 -0.01 0.92 16 38 H 0.09 1.03 5.23 -1.69 -0.01 1.03 16 39 H 0.11 1.23 6.50 -2.14 -0.01 1.21 16 40 H 0.11 1.50 5.79 -2.39 -0.01 1.49 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.04 1.74 7.01 -2.07 -0.01 1.72 16 49 H 0.10 2.59 8.15 -2.10 -0.02 2.57 16 Total: -1.00 -94.90 351.74 3.54 -91.36 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.76 Total: 25.46 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.48 Total: 2.62 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -2.53 Total: -126.64 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.07 Total: -46.89 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 1.90 Total: 54.08 kcal Total: -94.90 3.54 -91.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088295942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.447 kcal (2) G-P(sol) polarization free energy of solvation -94.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds