Wall clock time and date at job start Fri Apr 10 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99763 * 2 1 4 4 H 1.48498 * 109.46766 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47463 * 300.00634 * 3 2 1 6 6 H 1.48504 * 109.46821 * 60.00335 * 3 2 1 7 7 C 1.38813 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99657 * 179.72742 * 9 7 2 11 11 H 1.09002 * 109.48546 * 325.23634 * 10 9 7 12 12 C 1.52876 * 109.48545 * 205.19152 * 10 9 7 13 13 C 1.53957 * 109.73092 * 167.12646 * 12 10 9 14 14 C 1.52452 * 110.72991 * 315.63352 * 13 12 10 15 15 C 1.53802 * 109.40543 * 113.72747 * 14 13 12 16 16 C 1.52334 * 109.15600 * 282.16335 * 15 14 13 17 17 N 1.46965 * 109.10669 * 72.70573 * 16 15 14 18 18 C 1.34779 * 120.36942 * 68.37932 * 17 16 15 19 19 O 1.21281 * 119.99633 * 355.01563 * 18 17 16 20 20 C 1.50693 * 119.99881 * 175.01335 * 18 17 16 21 21 C 1.53008 * 109.46978 * 186.81522 * 20 18 17 22 22 O 1.42898 * 112.84705 * 53.80703 * 21 20 18 23 23 C 1.53778 * 113.61488 * 282.50282 * 21 20 18 24 24 C 1.53781 * 87.07819 * 220.01614 * 23 21 20 25 25 C 1.53778 * 113.61463 * 185.00026 * 21 20 18 26 26 C 1.45341 * 119.26519 * 248.35174 * 17 16 15 27 27 H 0.96994 * 120.00057 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00327 * 359.97438 * 9 7 2 29 29 H 1.08991 * 109.42825 * 287.20937 * 12 10 9 30 30 H 1.09005 * 109.42451 * 47.04811 * 12 10 9 31 31 H 1.09003 * 109.22533 * 195.31533 * 13 12 10 32 32 H 1.08992 * 109.19115 * 75.93246 * 13 12 10 33 33 H 1.09007 * 109.47709 * 353.74900 * 14 13 12 34 34 H 1.08997 * 109.49369 * 233.72005 * 14 13 12 35 35 H 1.08995 * 109.52027 * 162.26125 * 15 14 13 36 36 H 1.08998 * 109.57153 * 42.09962 * 15 14 13 37 37 H 1.08994 * 109.53346 * 312.81153 * 16 15 14 38 38 H 1.09003 * 109.59170 * 192.62726 * 16 15 14 39 39 H 1.08992 * 109.47368 * 306.81583 * 20 18 17 40 40 H 1.08996 * 109.47187 * 66.82273 * 20 18 17 41 41 H 0.96710 * 114.00011 * 309.66924 * 22 21 20 42 42 H 1.09001 * 113.61395 * 334.56689 * 23 21 20 43 43 H 1.09004 * 113.61454 * 105.46770 * 23 21 20 44 44 H 1.08995 * 113.61574 * 270.87992 * 24 23 21 45 45 H 1.09004 * 113.69074 * 139.98984 * 24 23 21 46 46 H 1.08994 * 113.61395 * 254.53311 * 25 21 20 47 47 H 1.09004 * 113.61341 * 25.44029 * 25 21 20 48 48 H 1.08996 * 109.68270 * 283.61525 * 26 17 16 49 49 H 1.09004 * 109.70387 * 163.09074 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3966 -1.2123 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0082 11 1 2.9688 -3.5477 -0.5972 12 6 1.1814 -4.7486 -0.6217 13 6 2.0373 -5.9909 -0.9288 14 6 3.3536 -5.5906 -1.5855 15 6 4.5189 -5.9226 -0.6384 16 6 4.5986 -4.8582 0.4485 17 7 3.4799 -5.0412 1.3839 18 6 3.4349 -6.1207 2.1896 19 8 4.2714 -6.9924 2.0826 20 6 2.3454 -6.2445 3.2232 21 6 2.6183 -7.4623 4.1084 22 8 3.9244 -7.4456 4.6879 23 6 2.2541 -8.8007 3.4443 24 6 1.7103 -9.2420 4.8134 25 6 1.4983 -7.7504 5.1221 26 6 2.4228 -4.0447 1.4309 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3880 -0.0016 29 1 0.3919 -5.0167 0.0802 30 1 0.7347 -4.3788 -1.5447 31 1 1.4865 -6.6490 -1.6010 32 1 2.2464 -6.5206 0.0005 33 1 3.3461 -4.5202 -1.7916 34 1 3.4761 -6.1396 -2.5191 35 1 5.4523 -5.9391 -1.2011 36 1 4.3516 -6.8980 -0.1815 37 1 4.5365 -3.8690 -0.0049 38 1 5.5421 -4.9542 0.9857 39 1 2.3246 -5.3453 3.8388 40 1 1.3837 -6.3660 2.7247 41 1 4.6352 -7.2879 4.0513 42 1 1.4852 -8.7123 2.6768 43 1 3.1202 -9.3737 3.1132 44 1 2.4584 -9.7172 5.4478 45 1 0.7828 -9.8115 4.7533 46 1 1.7543 -7.4757 6.1453 47 1 0.5227 -7.3750 4.8133 48 1 2.7717 -3.1647 1.9711 49 1 1.5483 -4.4601 1.9318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088311825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:03 Heat of formation + Delta-G solvation = -52.357918 kcal Electronic energy + Delta-G solvation = -28024.310760 eV Core-core repulsion = 24373.297903 eV Total energy + Delta-G solvation = -3651.012857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76750 -39.31063 -37.43494 -34.69953 -34.45146 -34.08812 -32.39125 -30.78662 -29.60690 -27.03942 -26.18704 -25.78842 -24.20133 -23.35002 -22.16872 -21.53141 -19.66996 -19.60496 -18.55278 -17.32843 -16.92030 -16.57147 -16.02516 -15.86361 -15.12884 -15.01015 -14.70182 -14.33298 -14.25337 -13.91096 -13.62213 -13.31560 -13.10511 -13.01875 -12.79933 -12.42608 -12.40056 -12.24457 -11.76485 -11.54958 -11.46063 -11.28118 -11.24377 -10.95040 -10.92527 -10.87156 -10.72014 -10.48450 -10.45154 -10.32120 -10.21095 -9.85338 -9.77072 -9.65982 -9.50497 -9.01575 -8.29755 -7.09777 -5.88790 -3.19055 2.69650 3.18563 3.35931 3.42207 3.44018 4.05419 4.40830 4.49810 4.53414 4.66276 4.74696 4.87045 5.05830 5.07782 5.11307 5.27982 5.34353 5.39941 5.40742 5.43950 5.58139 5.58901 5.63877 5.65108 5.68969 5.78689 5.82077 5.83241 5.90546 5.96037 6.02293 6.05692 6.17983 6.20314 6.23666 6.26064 6.28258 6.35689 6.50714 6.58197 6.66586 6.75407 6.92379 7.57368 7.61978 7.78716 8.27370 8.30790 9.41025 9.95993 10.30574 11.33279 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.003979 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.074112 B = 7035.890463 C = 7663.086157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.156 3.844 11 H 0.069 0.931 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.127 4.127 15 C -0.136 4.136 16 C 0.115 3.885 17 N -0.592 5.592 18 C 0.516 3.484 19 O -0.556 6.556 20 C -0.164 4.164 21 C 0.131 3.869 22 O -0.548 6.548 23 C -0.157 4.157 24 C -0.136 4.136 25 C -0.129 4.129 26 C 0.080 3.920 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.387 0.613 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -15.584 3.887 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.046 3.954 11 H 0.086 0.914 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.164 4.164 15 C -0.174 4.174 16 C -0.007 4.007 17 N -0.324 5.324 18 C 0.305 3.695 19 O -0.437 6.437 20 C -0.204 4.204 21 C 0.089 3.911 22 O -0.359 6.359 23 C -0.195 4.195 24 C -0.173 4.173 25 C -0.166 4.166 26 C -0.046 4.046 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.240 0.760 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.139 -15.945 4.337 17.035 hybrid contribution 0.252 1.291 -0.523 1.416 sum 4.391 -14.654 3.814 15.766 Atomic orbital electron populations 1.69665 1.05138 1.25754 1.57091 1.24745 0.95476 0.97735 1.02510 0.86158 0.78848 0.84127 0.77273 1.20500 1.21788 1.21790 1.19241 0.90966 0.83974 1.43460 0.91126 1.42419 1.05872 0.99541 1.88177 1.20916 0.95918 0.86500 0.92086 0.91371 1.22036 0.97956 0.95090 1.01128 1.21652 0.95815 0.97529 1.00151 1.21836 0.94435 1.02411 0.97758 1.22037 0.98446 1.00339 0.96605 1.21524 0.88755 0.99946 0.90484 1.47934 1.24122 1.22662 1.37655 1.20528 0.86227 0.81297 0.81433 1.90547 1.41953 1.39850 1.71369 1.22380 0.99368 1.01345 0.97285 1.21788 0.84686 0.91878 0.92792 1.86322 1.15184 1.94852 1.39558 1.23526 1.01478 0.97730 0.96756 1.22754 1.00993 0.96013 0.97589 1.23065 0.97191 0.96628 0.99736 1.22794 0.88860 0.90669 1.02291 0.93418 0.78121 0.92630 0.91571 0.93056 0.92344 0.90487 0.92682 0.91676 0.90346 0.89246 0.91642 0.88272 0.87833 0.75952 0.89933 0.90669 0.90007 0.91539 0.90595 0.88841 0.90971 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.27 9.89 -15.06 -0.15 -6.42 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.29 5.12 -53.26 -0.27 -16.56 16 10 C 0.16 2.72 2.29 -67.76 -0.16 2.57 16 11 H 0.07 1.22 3.29 -51.93 -0.17 1.05 16 12 C -0.12 -1.88 5.22 -26.30 -0.14 -2.02 16 13 C -0.11 -1.51 5.40 -26.51 -0.14 -1.65 16 14 C -0.13 -1.64 5.49 -26.59 -0.15 -1.79 16 15 C -0.14 -1.72 5.54 -26.65 -0.15 -1.87 16 16 C 0.12 1.56 5.20 -4.13 -0.02 1.54 16 17 N -0.59 -8.27 1.68 -174.36 -0.29 -8.56 16 18 C 0.52 7.11 5.88 -10.99 -0.06 7.05 16 19 O -0.56 -8.48 12.32 -12.66 -0.16 -8.63 16 20 C -0.16 -1.95 3.73 -27.88 -0.10 -2.06 16 21 C 0.13 1.57 1.09 -89.81 -0.10 1.47 16 22 O -0.55 -7.67 13.39 -53.45 -0.72 -8.39 16 23 C -0.16 -1.76 7.02 -25.92 -0.18 -1.95 16 24 C -0.14 -1.35 8.02 -25.92 -0.21 -1.56 16 25 C -0.13 -1.32 7.47 -25.92 -0.19 -1.51 16 26 C 0.08 1.24 5.37 -4.43 -0.02 1.22 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.38 9.40 7.80 -40.82 -0.32 9.09 16 29 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.80 5.38 -51.93 -0.28 0.52 16 33 H 0.08 1.10 5.47 -51.93 -0.28 0.82 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.11 6.04 -51.93 -0.31 0.80 16 37 H 0.09 1.26 6.07 -51.93 -0.32 0.95 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.18 7.96 -51.93 -0.41 0.76 16 40 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 41 H 0.39 5.38 6.44 45.56 0.29 5.67 16 42 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 48 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 49 H 0.07 1.04 5.92 -51.93 -0.31 0.74 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -28.31 363.02 -9.66 -37.96 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.52 Total: 15.56 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.87 Total: -7.30 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.16 Total: -50.99 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.87 Total: -17.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.31 -9.66 -37.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088311825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.396 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds