Wall clock time and date at job start Fri Apr 10 2020 22:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99763 * 2 1 4 4 H 1.48498 * 109.46766 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47463 * 300.00634 * 3 2 1 6 6 H 1.48504 * 109.46821 * 60.00335 * 3 2 1 7 7 C 1.38813 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99657 * 179.72742 * 9 7 2 11 11 H 1.09002 * 109.48546 * 325.23634 * 10 9 7 12 12 C 1.52876 * 109.48545 * 205.19152 * 10 9 7 13 13 C 1.53957 * 109.73092 * 167.12646 * 12 10 9 14 14 C 1.52452 * 110.72991 * 315.63352 * 13 12 10 15 15 C 1.53802 * 109.40543 * 113.72747 * 14 13 12 16 16 C 1.52334 * 109.15600 * 282.16335 * 15 14 13 17 17 N 1.46965 * 109.10669 * 72.70573 * 16 15 14 18 18 C 1.34779 * 120.36942 * 68.37932 * 17 16 15 19 19 O 1.21281 * 119.99633 * 355.01563 * 18 17 16 20 20 C 1.50693 * 119.99881 * 175.01335 * 18 17 16 21 21 C 1.53008 * 109.46978 * 186.81522 * 20 18 17 22 22 O 1.42898 * 112.84705 * 53.80703 * 21 20 18 23 23 C 1.53778 * 113.61488 * 282.50282 * 21 20 18 24 24 C 1.53781 * 87.07819 * 220.01614 * 23 21 20 25 25 C 1.53778 * 113.61463 * 185.00026 * 21 20 18 26 26 C 1.45341 * 119.26519 * 248.35174 * 17 16 15 27 27 H 0.96994 * 120.00057 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00327 * 359.97438 * 9 7 2 29 29 H 1.08991 * 109.42825 * 287.20937 * 12 10 9 30 30 H 1.09005 * 109.42451 * 47.04811 * 12 10 9 31 31 H 1.09003 * 109.22533 * 195.31533 * 13 12 10 32 32 H 1.08992 * 109.19115 * 75.93246 * 13 12 10 33 33 H 1.09007 * 109.47709 * 353.74900 * 14 13 12 34 34 H 1.08997 * 109.49369 * 233.72005 * 14 13 12 35 35 H 1.08995 * 109.52027 * 162.26125 * 15 14 13 36 36 H 1.08998 * 109.57153 * 42.09962 * 15 14 13 37 37 H 1.08994 * 109.53346 * 312.81153 * 16 15 14 38 38 H 1.09003 * 109.59170 * 192.62726 * 16 15 14 39 39 H 1.08992 * 109.47368 * 306.81583 * 20 18 17 40 40 H 1.08996 * 109.47187 * 66.82273 * 20 18 17 41 41 H 0.96710 * 114.00011 * 309.66924 * 22 21 20 42 42 H 1.09001 * 113.61395 * 334.56689 * 23 21 20 43 43 H 1.09004 * 113.61454 * 105.46770 * 23 21 20 44 44 H 1.08995 * 113.61574 * 270.87992 * 24 23 21 45 45 H 1.09004 * 113.69074 * 139.98984 * 24 23 21 46 46 H 1.08994 * 113.61395 * 254.53311 * 25 21 20 47 47 H 1.09004 * 113.61341 * 25.44029 * 25 21 20 48 48 H 1.08996 * 109.68270 * 283.61525 * 26 17 16 49 49 H 1.09004 * 109.70387 * 163.09074 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3966 -1.2123 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0082 11 1 2.9688 -3.5477 -0.5972 12 6 1.1814 -4.7486 -0.6217 13 6 2.0373 -5.9909 -0.9288 14 6 3.3536 -5.5906 -1.5855 15 6 4.5189 -5.9226 -0.6384 16 6 4.5986 -4.8582 0.4485 17 7 3.4799 -5.0412 1.3839 18 6 3.4349 -6.1207 2.1896 19 8 4.2714 -6.9924 2.0826 20 6 2.3454 -6.2445 3.2232 21 6 2.6183 -7.4623 4.1084 22 8 3.9244 -7.4456 4.6879 23 6 2.2541 -8.8007 3.4443 24 6 1.7103 -9.2420 4.8134 25 6 1.4983 -7.7504 5.1221 26 6 2.4228 -4.0447 1.4309 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3880 -0.0016 29 1 0.3919 -5.0167 0.0802 30 1 0.7347 -4.3788 -1.5447 31 1 1.4865 -6.6490 -1.6010 32 1 2.2464 -6.5206 0.0005 33 1 3.3461 -4.5202 -1.7916 34 1 3.4761 -6.1396 -2.5191 35 1 5.4523 -5.9391 -1.2011 36 1 4.3516 -6.8980 -0.1815 37 1 4.5365 -3.8690 -0.0049 38 1 5.5421 -4.9542 0.9857 39 1 2.3246 -5.3453 3.8388 40 1 1.3837 -6.3660 2.7247 41 1 4.6352 -7.2879 4.0513 42 1 1.4852 -8.7123 2.6768 43 1 3.1202 -9.3737 3.1132 44 1 2.4584 -9.7172 5.4478 45 1 0.7828 -9.8115 4.7533 46 1 1.7543 -7.4757 6.1453 47 1 0.5227 -7.3750 4.8133 48 1 2.7717 -3.1647 1.9711 49 1 1.5483 -4.4601 1.9318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088311825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:02 Heat of formation + Delta-G solvation = -68.224787 kcal Electronic energy + Delta-G solvation = -28024.998799 eV Core-core repulsion = 24373.297903 eV Total energy + Delta-G solvation = -3651.700896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86402 -40.32688 -38.63355 -36.22983 -35.50444 -35.21626 -33.98136 -32.11894 -30.91980 -28.42392 -27.37378 -26.62500 -25.76635 -24.55087 -23.28956 -22.78888 -20.85169 -20.56397 -19.70351 -19.17716 -18.09006 -17.67088 -17.24302 -16.88863 -16.50787 -16.09068 -15.90894 -15.61998 -15.46121 -15.08782 -14.99047 -14.81307 -14.23053 -14.17870 -13.92347 -13.73704 -13.45728 -13.23739 -13.11076 -12.92708 -12.78711 -12.60347 -12.51418 -12.28036 -12.13269 -12.10077 -11.90717 -11.76999 -11.74716 -11.50844 -11.43357 -11.38146 -11.17626 -10.91801 -10.59538 -10.51437 -9.53682 -8.95907 -7.92768 -5.20838 1.48400 1.50350 1.58313 1.59259 2.04879 2.57756 3.13892 3.39820 3.41672 3.65563 3.71782 3.78068 3.84578 3.93484 4.03959 4.08757 4.13163 4.22181 4.29272 4.40106 4.43922 4.49216 4.57870 4.58925 4.69606 4.72829 4.78174 4.81414 4.86023 4.87785 4.97934 5.04563 5.06902 5.14558 5.14849 5.21237 5.32777 5.34502 5.38378 5.42252 5.45721 5.50733 5.56699 5.71696 6.29498 6.45598 6.73975 7.17233 7.36931 8.11136 8.34002 9.30382 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.003979 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.074112 B = 7035.890463 C = 7663.086157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.068 4.068 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.297 1.297 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.730 5.730 10 C 0.155 3.845 11 H 0.067 0.933 12 C -0.116 4.116 13 C -0.105 4.105 14 C -0.125 4.125 15 C -0.126 4.126 16 C 0.112 3.888 17 N -0.591 5.591 18 C 0.517 3.483 19 O -0.568 6.568 20 C -0.161 4.161 21 C 0.117 3.883 22 O -0.563 6.563 23 C -0.156 4.156 24 C -0.131 4.131 25 C -0.125 4.125 26 C 0.095 3.905 27 H 0.250 0.750 28 H 0.374 0.626 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.384 0.616 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.049 0.951 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 -16.901 3.940 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.370 5.370 10 C 0.046 3.954 11 H 0.085 0.915 12 C -0.154 4.154 13 C -0.143 4.143 14 C -0.162 4.162 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.322 5.322 18 C 0.307 3.693 19 O -0.450 6.450 20 C -0.200 4.200 21 C 0.076 3.924 22 O -0.373 6.373 23 C -0.194 4.194 24 C -0.168 4.168 25 C -0.162 4.162 26 C -0.030 4.030 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.237 0.763 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.132 0.868 48 H 0.068 0.932 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.394 -17.310 4.396 18.392 hybrid contribution 0.259 1.596 -0.550 1.707 sum 4.654 -15.715 3.847 16.835 Atomic orbital electron populations 1.69797 1.06433 1.25817 1.59585 1.25414 0.96174 1.00613 1.03917 0.85241 0.78420 0.80675 0.76446 1.19134 1.22439 1.22402 1.19569 0.91300 0.85026 1.40657 0.90674 1.42568 1.05528 1.00632 1.88265 1.21096 0.95807 0.85218 0.93291 0.91550 1.21938 0.98004 0.95046 1.00455 1.21591 0.95752 0.96517 1.00471 1.21810 0.94324 1.01603 0.98492 1.21947 0.99161 0.99149 0.96203 1.21584 0.88741 0.99930 0.90781 1.47859 1.23826 1.22436 1.38097 1.20831 0.86415 0.80697 0.81367 1.90550 1.42588 1.40193 1.71683 1.22416 0.99363 1.01491 0.96774 1.22063 0.84341 0.92246 0.93761 1.86315 1.16038 1.94967 1.40013 1.23528 1.01207 0.97023 0.97657 1.22728 1.01567 0.96118 0.96421 1.23132 0.97306 0.96717 0.99030 1.22388 0.89744 0.90456 1.00455 0.94135 0.79363 0.91813 0.92896 0.91594 0.92454 0.91966 0.91156 0.90125 0.91376 0.90015 0.91440 0.88147 0.86076 0.76306 0.88803 0.92335 0.90833 0.89573 0.91025 0.86823 0.93235 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.10 13.06 21.65 0.28 -55.82 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.23 -11.91 9.89 84.03 0.83 -11.08 16 8 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -33.00 5.12 -322.42 -1.65 -34.65 16 10 C 0.15 5.25 2.29 45.10 0.10 5.35 16 11 H 0.07 2.32 3.29 -2.39 -0.01 2.31 16 12 C -0.12 -3.36 5.22 30.88 0.16 -3.20 16 13 C -0.11 -2.56 5.40 30.74 0.17 -2.39 16 14 C -0.13 -2.97 5.49 30.68 0.17 -2.81 16 15 C -0.13 -2.96 5.54 30.64 0.17 -2.79 16 16 C 0.11 2.89 5.20 86.07 0.45 3.34 16 17 N -0.59 -15.71 1.68 -823.94 -1.39 -17.10 16 18 C 0.52 13.44 5.88 87.65 0.52 13.96 16 19 O -0.57 -16.62 12.32 14.39 0.18 -16.45 16 20 C -0.16 -3.51 3.73 29.85 0.11 -3.40 16 21 C 0.12 2.63 1.09 -10.27 -0.01 2.62 16 22 O -0.56 -15.35 13.39 -131.56 -1.76 -17.11 16 23 C -0.16 -3.22 7.02 31.12 0.22 -3.00 16 24 C -0.13 -2.32 8.02 31.12 0.25 -2.07 16 25 C -0.12 -2.26 7.47 31.12 0.23 -2.03 16 26 C 0.10 2.87 5.37 86.75 0.47 3.34 16 27 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.37 18.42 7.80 -92.71 -0.72 17.69 16 29 H 0.06 1.74 7.87 -2.39 -0.02 1.72 16 30 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.43 5.38 -2.39 -0.01 1.41 16 33 H 0.06 1.69 5.47 -2.38 -0.01 1.68 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.79 6.04 -2.39 -0.01 1.77 16 37 H 0.08 2.24 6.07 -2.39 -0.01 2.23 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 2.19 7.96 -2.39 -0.02 2.18 16 40 H 0.12 2.23 7.58 -2.39 -0.02 2.21 16 41 H 0.38 10.58 6.44 -74.05 -0.48 10.10 16 42 H 0.09 1.70 8.03 -2.39 -0.02 1.68 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.19 8.14 -2.38 -0.02 1.18 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 1.60 8.10 -2.39 -0.02 1.58 16 48 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 49 H 0.09 2.35 5.92 -2.38 -0.01 2.34 16 Total: -1.00 -60.16 363.02 1.75 -58.42 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.24 Total: 43.97 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.30 Total: -7.41 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -2.76 Total: -107.57 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.58 Total: -33.56 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.16 1.75 -58.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088311825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.806 kcal (2) G-P(sol) polarization free energy of solvation -60.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds