Wall clock time and date at job start Fri Apr 10 2020 22:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48502 * 109.46871 * 270.00216 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00051 * 3 2 1 6 6 H 1.48496 * 109.47109 * 149.99913 * 3 2 1 7 7 C 1.38817 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00361 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99448 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99782 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.52422 * 34.87130 * 10 9 7 12 12 C 1.53795 * 109.52332 * 154.99777 * 10 9 7 13 13 C 1.52455 * 109.40243 * 197.79934 * 12 10 9 14 14 C 1.53954 * 110.73029 * 246.27378 * 13 12 10 15 15 C 1.52874 * 109.73169 * 44.36870 * 14 13 12 16 16 C 1.53446 * 109.38533 * 72.89572 * 15 14 13 17 17 N 1.45335 * 108.41115 * 282.27647 * 16 15 14 18 18 C 1.34780 * 120.36210 * 136.66360 * 17 16 15 19 19 O 1.21285 * 119.99671 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00025 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47218 * 174.27484 * 20 18 17 22 22 O 1.42898 * 112.84815 * 69.54800 * 21 20 18 23 23 C 1.53776 * 113.61311 * 298.35907 * 21 20 18 24 24 C 1.53780 * 87.08331 * 219.93148 * 23 21 20 25 25 C 1.53788 * 87.16958 * 25.39084 * 24 23 21 26 26 C 1.46962 * 119.27112 * 316.93261 * 17 16 15 27 27 H 0.97008 * 119.99940 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99692 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.48297 * 77.82769 * 12 10 9 30 30 H 1.08999 * 109.48777 * 317.78215 * 12 10 9 31 31 H 1.09002 * 109.22234 * 125.95346 * 13 12 10 32 32 H 1.08998 * 109.18674 * 6.57756 * 13 12 10 33 33 H 1.09002 * 109.42564 * 284.28623 * 14 13 12 34 34 H 1.09005 * 109.42336 * 164.45126 * 14 13 12 35 35 H 1.09000 * 109.48258 * 312.91675 * 15 14 13 36 36 H 1.09001 * 109.48510 * 192.86679 * 15 14 13 37 37 H 1.08998 * 109.67223 * 162.54970 * 16 15 14 38 38 H 1.08993 * 109.70839 * 42.02611 * 16 15 14 39 39 H 1.09001 * 109.46981 * 54.27276 * 20 18 17 40 40 H 1.09002 * 109.47395 * 294.27726 * 20 18 17 41 41 H 0.96706 * 113.99933 * 54.16980 * 22 21 20 42 42 H 1.09004 * 113.62202 * 105.38393 * 23 21 20 43 43 H 1.09005 * 113.61881 * 334.47669 * 23 21 20 44 44 H 1.08994 * 113.61893 * 139.97357 * 24 23 21 45 45 H 1.08998 * 113.61589 * 270.80627 * 24 23 21 46 46 H 1.08995 * 113.61537 * 89.16042 * 25 24 23 47 47 H 1.09007 * 113.61066 * 220.06286 * 25 24 23 48 48 H 1.09003 * 109.53286 * 231.25424 * 26 17 16 49 49 H 1.09000 * 109.53290 * 351.47917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5644 -3.2072 -0.5896 12 6 5.5069 -2.2586 -0.6130 13 6 6.0915 -3.6062 -1.0210 14 6 7.3225 -3.9487 -0.1622 15 6 7.0301 -3.6384 1.3059 16 6 6.0614 -4.6886 1.8653 17 7 4.7212 -4.3702 1.4018 18 6 3.9063 -5.3449 0.9520 19 8 2.7894 -5.0716 0.5663 20 6 4.3833 -6.7742 0.9275 21 6 3.2297 -7.6898 0.5130 22 8 2.8577 -7.5281 -0.8572 23 6 2.0371 -7.6557 1.4832 24 6 1.9278 -9.1759 1.2782 25 6 3.4251 -9.1595 0.9277 26 6 4.2667 -2.9728 1.4231 27 1 -0.4850 0.8401 0.0004 28 1 3.8645 -0.3622 0.0004 29 1 6.1587 -1.7875 0.1227 30 1 5.4253 -1.6171 -1.4904 31 1 6.3853 -3.5671 -2.0700 32 1 5.3350 -4.3797 -0.8888 33 1 8.1737 -3.3553 -0.4957 34 1 7.5558 -5.0081 -0.2694 35 1 6.5796 -2.6490 1.3855 36 1 7.9597 -3.6617 1.8746 37 1 6.0873 -4.6683 2.9548 38 1 6.3471 -5.6786 1.5099 39 1 4.7335 -7.0575 1.9201 40 1 5.2001 -6.8725 0.2124 41 1 3.5915 -7.6301 -1.4787 42 1 1.1797 -7.1010 1.1020 43 1 2.3090 -7.3708 2.4996 44 1 1.6993 -9.7244 2.1919 45 1 1.2870 -9.4589 0.4430 46 1 4.0772 -9.2864 1.7918 47 1 3.6867 -9.8171 0.0986 48 1 3.3043 -2.9103 1.9311 49 1 4.9982 -2.3596 1.9494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088311826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:07 Heat of formation + Delta-G solvation = -38.745260 kcal Electronic energy + Delta-G solvation = -28181.776038 eV Core-core repulsion = 24531.353470 eV Total energy + Delta-G solvation = -3650.422568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60122 -39.31435 -37.20103 -35.13938 -34.55283 -33.84120 -32.08575 -30.52830 -30.04666 -27.43757 -26.24729 -25.75262 -23.99941 -22.91951 -22.55139 -20.73454 -19.88765 -19.68691 -18.58356 -17.48995 -17.02553 -16.41938 -15.91909 -15.81474 -15.24352 -14.99113 -14.55061 -14.39050 -14.31545 -13.93107 -13.54131 -13.35159 -13.07156 -12.83342 -12.54399 -12.40020 -12.35639 -12.21453 -11.90837 -11.66784 -11.60740 -11.36879 -11.07674 -10.99581 -10.93757 -10.84533 -10.76848 -10.41522 -10.25662 -10.18782 -10.17091 -9.90540 -9.77317 -9.44405 -9.14740 -8.95056 -8.18825 -7.15157 -5.64393 -3.00800 3.01571 3.26401 3.41938 3.44928 3.50624 4.08347 4.33694 4.54690 4.61644 4.65907 4.67638 4.81941 4.88904 4.92893 5.06367 5.18049 5.18975 5.28828 5.32925 5.39542 5.47057 5.51731 5.58689 5.61766 5.63897 5.65573 5.76602 5.79788 5.79992 5.90817 5.97965 6.03926 6.09111 6.20583 6.25362 6.26672 6.33230 6.38025 6.46019 6.61421 6.72496 6.83676 7.17375 7.71681 7.78368 8.17641 8.54938 8.62812 9.33324 10.04040 10.22576 11.54099 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.004813 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.271811 B = 5816.645877 C = 7231.780699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.096 0.904 9 N -0.745 5.745 10 C 0.169 3.831 11 H 0.072 0.928 12 C -0.134 4.134 13 C -0.115 4.115 14 C -0.113 4.113 15 C -0.152 4.152 16 C 0.109 3.891 17 N -0.609 5.609 18 C 0.504 3.496 19 O -0.499 6.499 20 C -0.159 4.159 21 C 0.128 3.872 22 O -0.524 6.524 23 C -0.118 4.118 24 C -0.137 4.137 25 C -0.166 4.166 26 C 0.101 3.899 27 H 0.257 0.743 28 H 0.359 0.641 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.371 0.629 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.795 -17.386 3.809 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.366 4.366 8 H 0.113 0.887 9 N -0.387 5.387 10 C 0.059 3.941 11 H 0.090 0.910 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.150 4.150 15 C -0.189 4.189 16 C -0.015 4.015 17 N -0.345 5.345 18 C 0.290 3.710 19 O -0.372 6.372 20 C -0.200 4.200 21 C 0.086 3.914 22 O -0.328 6.328 23 C -0.155 4.155 24 C -0.175 4.175 25 C -0.204 4.204 26 C -0.024 4.024 27 H 0.068 0.932 28 H 0.192 0.808 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.217 0.783 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.306 -17.188 3.854 24.004 hybrid contribution 1.411 1.233 -0.093 1.876 sum 17.717 -15.955 3.761 24.137 Atomic orbital electron populations 1.69718 1.05052 1.25477 1.57983 1.24675 0.95179 0.96921 1.02454 0.86596 0.79118 0.85404 0.77659 1.21242 1.21892 1.20492 1.19207 0.80413 0.94954 1.42004 0.88668 1.42766 1.04161 1.01743 1.89996 1.20576 0.90505 0.89557 0.93498 0.91032 1.22138 0.97395 0.96793 1.00872 1.21645 0.97115 0.98174 0.98422 1.21715 0.97993 1.00562 0.94772 1.22342 0.99069 1.01103 0.96412 1.21517 0.82771 0.98852 0.98332 1.47939 1.13958 1.08183 1.64447 1.20319 0.85658 0.86491 0.78488 1.90852 1.19072 1.82882 1.44395 1.22369 0.99846 0.94028 1.03748 1.21905 0.94034 0.91711 0.83724 1.86656 1.37659 1.94244 1.14271 1.22894 0.98870 0.95950 0.97799 1.22780 0.96089 0.97026 1.01567 1.23700 0.97855 0.97123 1.01689 1.22356 0.99970 0.79061 1.00964 0.93240 0.80842 0.91969 0.91962 0.92830 0.91768 0.92326 0.92483 0.89322 0.91422 0.92357 0.90599 0.88667 0.89140 0.78300 0.89581 0.89620 0.91634 0.89882 0.89660 0.91117 0.90463 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.55 13.97 55.49 0.78 -29.77 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.63 27.74 -169.99 -4.71 17.92 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.24 -6.98 10.38 -15.05 -0.16 -7.13 16 8 H 0.10 3.16 8.06 -52.49 -0.42 2.74 16 9 N -0.74 -18.17 4.93 -53.62 -0.26 -18.44 16 10 C 0.17 3.38 2.38 -68.13 -0.16 3.21 16 11 H 0.07 1.67 6.13 -51.93 -0.32 1.35 16 12 C -0.13 -2.11 4.97 -26.60 -0.13 -2.24 16 13 C -0.12 -1.49 5.41 -26.51 -0.14 -1.63 16 14 C -0.11 -1.09 5.75 -26.30 -0.15 -1.24 16 15 C -0.15 -1.44 5.45 -26.57 -0.14 -1.59 16 16 C 0.11 1.06 5.81 -4.44 -0.03 1.04 16 17 N -0.61 -8.55 1.70 -174.68 -0.30 -8.85 16 18 C 0.50 7.77 5.88 -10.99 -0.06 7.71 16 19 O -0.50 -10.48 13.61 -2.70 -0.04 -10.52 16 20 C -0.16 -1.68 3.76 -27.88 -0.10 -1.79 16 21 C 0.13 1.51 0.96 -89.72 -0.09 1.42 16 22 O -0.52 -7.18 12.95 -43.48 -0.56 -7.75 16 23 C -0.12 -1.55 6.25 -25.92 -0.16 -1.71 16 24 C -0.14 -1.44 8.01 -25.92 -0.21 -1.64 16 25 C -0.17 -1.48 7.48 -25.83 -0.19 -1.67 16 26 C 0.10 1.79 4.72 -4.40 -0.02 1.76 16 27 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 28 H 0.36 8.48 5.66 -40.82 -0.23 8.25 16 29 H 0.06 0.89 5.47 -51.93 -0.28 0.60 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.92 5.37 -51.93 -0.28 0.64 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 35 H 0.09 1.02 3.35 -51.93 -0.17 0.84 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.58 5.83 -51.93 -0.30 0.27 16 39 H 0.10 0.79 7.67 -51.93 -0.40 0.39 16 40 H 0.09 0.76 7.79 -51.93 -0.40 0.35 16 41 H 0.37 3.47 9.09 45.56 0.41 3.88 16 42 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 43 H 0.09 1.05 8.10 -51.93 -0.42 0.62 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.61 8.00 -51.93 -0.42 0.20 16 47 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.08 1.68 8.05 -51.93 -0.42 1.27 16 49 H 0.07 1.09 6.06 -51.93 -0.31 0.77 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -36.13 362.35 -8.84 -44.97 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.35 Total: 12.49 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.85 Total: -5.51 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.21 Total: -57.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.60 Total: -18.26 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.13 -8.84 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088311826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.222 kcal (2) G-P(sol) polarization free energy of solvation -36.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds