Wall clock time and date at job start Fri Apr 10 2020 22:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48502 * 109.46871 * 270.00216 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00051 * 3 2 1 6 6 H 1.48496 * 109.47109 * 149.99913 * 3 2 1 7 7 C 1.38817 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00361 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99448 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99782 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.52422 * 34.87130 * 10 9 7 12 12 C 1.53795 * 109.52332 * 154.99777 * 10 9 7 13 13 C 1.52455 * 109.40243 * 197.79934 * 12 10 9 14 14 C 1.53954 * 110.73029 * 246.27378 * 13 12 10 15 15 C 1.52874 * 109.73169 * 44.36870 * 14 13 12 16 16 C 1.53446 * 109.38533 * 72.89572 * 15 14 13 17 17 N 1.45335 * 108.41115 * 282.27647 * 16 15 14 18 18 C 1.34780 * 120.36210 * 136.66360 * 17 16 15 19 19 O 1.21285 * 119.99671 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00025 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47218 * 174.27484 * 20 18 17 22 22 O 1.42898 * 112.84815 * 69.54800 * 21 20 18 23 23 C 1.53776 * 113.61311 * 298.35907 * 21 20 18 24 24 C 1.53780 * 87.08331 * 219.93148 * 23 21 20 25 25 C 1.53788 * 87.16958 * 25.39084 * 24 23 21 26 26 C 1.46962 * 119.27112 * 316.93261 * 17 16 15 27 27 H 0.97008 * 119.99940 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99692 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.48297 * 77.82769 * 12 10 9 30 30 H 1.08999 * 109.48777 * 317.78215 * 12 10 9 31 31 H 1.09002 * 109.22234 * 125.95346 * 13 12 10 32 32 H 1.08998 * 109.18674 * 6.57756 * 13 12 10 33 33 H 1.09002 * 109.42564 * 284.28623 * 14 13 12 34 34 H 1.09005 * 109.42336 * 164.45126 * 14 13 12 35 35 H 1.09000 * 109.48258 * 312.91675 * 15 14 13 36 36 H 1.09001 * 109.48510 * 192.86679 * 15 14 13 37 37 H 1.08998 * 109.67223 * 162.54970 * 16 15 14 38 38 H 1.08993 * 109.70839 * 42.02611 * 16 15 14 39 39 H 1.09001 * 109.46981 * 54.27276 * 20 18 17 40 40 H 1.09002 * 109.47395 * 294.27726 * 20 18 17 41 41 H 0.96706 * 113.99933 * 54.16980 * 22 21 20 42 42 H 1.09004 * 113.62202 * 105.38393 * 23 21 20 43 43 H 1.09005 * 113.61881 * 334.47669 * 23 21 20 44 44 H 1.08994 * 113.61893 * 139.97357 * 24 23 21 45 45 H 1.08998 * 113.61589 * 270.80627 * 24 23 21 46 46 H 1.08995 * 113.61537 * 89.16042 * 25 24 23 47 47 H 1.09007 * 113.61066 * 220.06286 * 25 24 23 48 48 H 1.09003 * 109.53286 * 231.25424 * 26 17 16 49 49 H 1.09000 * 109.53290 * 351.47917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5644 -3.2072 -0.5896 12 6 5.5069 -2.2586 -0.6130 13 6 6.0915 -3.6062 -1.0210 14 6 7.3225 -3.9487 -0.1622 15 6 7.0301 -3.6384 1.3059 16 6 6.0614 -4.6886 1.8653 17 7 4.7212 -4.3702 1.4018 18 6 3.9063 -5.3449 0.9520 19 8 2.7894 -5.0716 0.5663 20 6 4.3833 -6.7742 0.9275 21 6 3.2297 -7.6898 0.5130 22 8 2.8577 -7.5281 -0.8572 23 6 2.0371 -7.6557 1.4832 24 6 1.9278 -9.1759 1.2782 25 6 3.4251 -9.1595 0.9277 26 6 4.2667 -2.9728 1.4231 27 1 -0.4850 0.8401 0.0004 28 1 3.8645 -0.3622 0.0004 29 1 6.1587 -1.7875 0.1227 30 1 5.4253 -1.6171 -1.4904 31 1 6.3853 -3.5671 -2.0700 32 1 5.3350 -4.3797 -0.8888 33 1 8.1737 -3.3553 -0.4957 34 1 7.5558 -5.0081 -0.2694 35 1 6.5796 -2.6490 1.3855 36 1 7.9597 -3.6617 1.8746 37 1 6.0873 -4.6683 2.9548 38 1 6.3471 -5.6786 1.5099 39 1 4.7335 -7.0575 1.9201 40 1 5.2001 -6.8725 0.2124 41 1 3.5915 -7.6301 -1.4787 42 1 1.1797 -7.1010 1.1020 43 1 2.3090 -7.3708 2.4996 44 1 1.6993 -9.7244 2.1919 45 1 1.2870 -9.4589 0.4430 46 1 4.0772 -9.2864 1.7918 47 1 3.6867 -9.8171 0.0986 48 1 3.3043 -2.9103 1.9311 49 1 4.9982 -2.3596 1.9494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088311826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:06 Heat of formation + Delta-G solvation = -66.241204 kcal Electronic energy + Delta-G solvation = -28182.968351 eV Core-core repulsion = 24531.353470 eV Total energy + Delta-G solvation = -3651.614882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72031 -40.31896 -38.46524 -36.78848 -35.54023 -35.04076 -34.02188 -31.87391 -31.44397 -28.73953 -27.33574 -26.62174 -25.58929 -24.33585 -23.55258 -22.33903 -20.91718 -20.60891 -19.91700 -19.47670 -18.10165 -17.49488 -17.23205 -16.87130 -16.47705 -16.20099 -15.91690 -15.62770 -15.44418 -15.25717 -14.97356 -14.56986 -14.39344 -14.11576 -13.98832 -13.73945 -13.47571 -13.25087 -13.17606 -13.09303 -12.84266 -12.65971 -12.48163 -12.18145 -12.02070 -11.97683 -11.87671 -11.75422 -11.73408 -11.49767 -11.40603 -11.28067 -11.10775 -11.02852 -10.73042 -10.35589 -9.68338 -9.10940 -8.03261 -5.38927 1.32532 1.39782 1.46735 1.85156 2.13445 2.46434 3.21644 3.26831 3.43132 3.59562 3.70959 3.75099 3.84426 3.94054 3.99082 4.10985 4.15625 4.19492 4.27818 4.38361 4.46064 4.50213 4.58825 4.64913 4.68912 4.76975 4.79267 4.83347 4.87340 4.90095 4.93669 5.04687 5.08559 5.16404 5.19332 5.28249 5.31107 5.34253 5.45194 5.46367 5.48612 5.59413 5.74414 5.81014 6.21189 6.66602 6.95992 7.06302 7.46823 7.79576 8.02867 9.19641 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.004813 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.271811 B = 5816.645877 C = 7231.780699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.226 4.226 8 H 0.034 0.966 9 N -0.747 5.747 10 C 0.167 3.833 11 H 0.025 0.975 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.105 4.105 15 C -0.150 4.150 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.494 3.506 19 O -0.573 6.573 20 C -0.146 4.146 21 C 0.117 3.883 22 O -0.559 6.559 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.137 4.137 26 C 0.116 3.884 27 H 0.258 0.742 28 H 0.368 0.632 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.387 0.613 42 H 0.029 0.971 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.019 0.981 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.829 -18.484 4.934 30.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.641 5.641 2 C -0.260 4.260 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.358 4.358 8 H 0.052 0.948 9 N -0.390 5.390 10 C 0.059 3.941 11 H 0.043 0.957 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.187 4.187 16 C -0.022 4.022 17 N -0.337 5.337 18 C 0.283 3.717 19 O -0.451 6.451 20 C -0.186 4.186 21 C 0.076 3.924 22 O -0.366 6.366 23 C -0.175 4.175 24 C -0.173 4.173 25 C -0.175 4.175 26 C -0.010 4.010 27 H 0.066 0.934 28 H 0.202 0.798 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.236 0.764 42 H 0.048 0.952 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.104 0.896 48 H 0.038 0.962 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.457 -18.344 4.995 29.424 hybrid contribution -0.564 1.482 -0.456 1.650 sum 21.892 -16.862 4.539 28.004 Atomic orbital electron populations 1.69953 1.07558 1.26708 1.59858 1.25657 0.96227 1.01675 1.02477 0.85243 0.78678 0.78555 0.78218 1.20320 1.22025 1.16817 1.18903 0.82861 0.92763 1.41226 0.94815 1.42665 1.02228 1.03876 1.90265 1.20694 0.92074 0.86633 0.94735 0.95694 1.22055 0.94609 0.98927 1.00587 1.21618 0.98262 0.95515 0.99780 1.21711 0.96135 1.02516 0.93891 1.22330 1.00140 0.99430 0.96802 1.21967 0.79759 1.00865 0.99586 1.47959 1.15875 1.06091 1.63794 1.21371 0.84743 0.88708 0.76831 1.90850 1.22467 1.84214 1.47558 1.22408 1.00040 0.89396 1.06738 1.22096 0.93501 0.94360 0.82438 1.86619 1.39525 1.94652 1.15854 1.22998 0.98184 0.97626 0.98652 1.22764 0.97914 0.94650 1.01937 1.23585 0.96480 0.94284 1.03134 1.21793 0.98216 0.82322 0.98621 0.93358 0.79831 0.89448 0.93253 0.92261 0.93728 0.90874 0.89845 0.91571 0.87988 0.90551 0.87137 0.84975 0.85583 0.76445 0.95221 0.88949 0.89706 0.91453 0.86437 0.89563 0.96233 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.72 13.97 21.65 0.30 -68.42 16 2 C -0.07 -4.45 5.50 84.86 0.47 -3.99 16 3 Si 0.97 47.87 27.74 68.60 1.90 49.77 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 6 H -0.24 -10.58 6.52 99.48 0.65 -9.93 16 7 C -0.23 -14.43 10.38 84.03 0.87 -13.56 16 8 H 0.03 2.51 8.06 -2.91 -0.02 2.49 16 9 N -0.75 -38.01 4.93 -323.54 -1.59 -39.60 16 10 C 0.17 7.02 2.38 44.87 0.11 7.13 16 11 H 0.02 1.28 6.13 -2.39 -0.01 1.27 16 12 C -0.12 -3.77 4.97 30.68 0.15 -3.61 16 13 C -0.11 -2.66 5.41 30.74 0.17 -2.50 16 14 C -0.11 -1.47 5.75 30.87 0.18 -1.29 16 15 C -0.15 -2.04 5.45 30.70 0.17 -1.87 16 16 C 0.10 1.47 5.81 86.75 0.50 1.98 16 17 N -0.60 -16.44 1.70 -824.96 -1.40 -17.83 16 18 C 0.49 15.55 5.88 87.66 0.52 16.07 16 19 O -0.57 -26.68 13.61 4.84 0.07 -26.61 16 20 C -0.15 -2.68 3.76 29.85 0.11 -2.57 16 21 C 0.12 2.68 0.96 -10.21 -0.01 2.67 16 22 O -0.56 -16.00 12.95 -141.09 -1.83 -17.82 16 23 C -0.14 -3.86 6.25 31.12 0.19 -3.66 16 24 C -0.14 -2.77 8.01 31.12 0.25 -2.52 16 25 C -0.14 -2.00 7.48 31.18 0.23 -1.76 16 26 C 0.12 4.26 4.72 85.90 0.41 4.66 16 27 H 0.26 16.83 8.31 -92.70 -0.77 16.06 16 28 H 0.37 17.25 5.66 -92.71 -0.53 16.72 16 29 H 0.09 2.23 5.47 -2.39 -0.01 2.22 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.23 5.37 -2.39 -0.01 1.22 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.80 7.87 -2.38 -0.02 0.79 16 35 H 0.07 1.23 3.35 -2.39 -0.01 1.22 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.93 5.83 -2.39 -0.01 0.92 16 39 H 0.13 1.49 7.67 -2.39 -0.02 1.47 16 40 H 0.13 1.47 7.79 -2.39 -0.02 1.45 16 41 H 0.39 7.22 9.09 -74.05 -0.67 6.55 16 42 H 0.03 1.13 8.07 -2.38 -0.02 1.11 16 43 H 0.09 2.35 8.10 -2.38 -0.02 2.33 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.12 1.02 8.00 -2.39 -0.02 1.00 16 47 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.02 0.92 8.05 -2.39 -0.02 0.90 16 49 H 0.10 2.98 6.06 -2.39 -0.01 2.96 16 Total: -1.00 -93.10 362.35 1.47 -91.63 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.30 Total: 33.72 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.31 Total: -4.82 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -2.69 Total: -125.86 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.76 Total: -44.44 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.77 kcal Total: -93.10 1.47 -91.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088311826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.389 kcal (2) G-P(sol) polarization free energy of solvation -93.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds