Wall clock time and date at job start Fri Apr 10 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47072 * 239.99944 * 3 2 1 5 5 H 1.48496 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46733 * 120.00281 * 3 2 1 7 7 C 1.38811 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99771 * 197.36142 * 7 2 1 9 9 N 1.36934 * 120.00155 * 17.35466 * 7 2 1 10 10 C 1.46928 * 120.63125 * 207.66979 * 9 7 2 11 11 C 1.53194 * 108.77583 * 233.63215 * 10 9 7 12 12 C 1.53046 * 109.31472 * 305.36505 * 11 10 9 13 13 H 1.09002 * 109.44776 * 301.35263 * 12 11 10 14 14 N 1.46492 * 109.46270 * 181.38469 * 12 11 10 15 15 C 1.34775 * 119.99821 * 84.93416 * 14 12 11 16 16 O 1.21287 * 120.00490 * 359.97438 * 15 14 12 17 17 C 1.50700 * 120.00195 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47468 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47199 * 294.99770 * 18 17 15 20 20 C 1.52998 * 109.47199 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47178 * 59.99960 * 20 19 18 22 22 C 1.52994 * 109.47088 * 300.00108 * 21 20 19 23 23 C 1.52998 * 109.47199 * 59.99905 * 22 21 20 24 24 C 1.53041 * 109.53675 * 61.36000 * 12 11 10 25 25 H 1.09006 * 109.49406 * 58.59110 * 24 12 11 26 26 O 1.42900 * 109.49780 * 178.68502 * 24 12 11 27 27 C 1.46925 * 120.63196 * 27.69460 * 9 7 2 28 28 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58778 * 353.41855 * 10 9 7 30 30 H 1.09003 * 109.58773 * 113.70625 * 10 9 7 31 31 H 1.08998 * 109.49771 * 185.41881 * 11 10 9 32 32 H 1.08999 * 109.49670 * 65.31520 * 11 10 9 33 33 H 0.96998 * 120.00185 * 264.93237 * 14 12 11 34 34 H 1.09004 * 109.47245 * 59.99237 * 17 15 14 35 35 H 1.09004 * 109.47015 * 299.99907 * 17 15 14 36 36 H 1.08997 * 109.46928 * 54.99864 * 18 17 15 37 37 H 1.09006 * 109.47189 * 299.99868 * 19 18 17 38 38 H 1.08998 * 109.47232 * 59.99794 * 19 18 17 39 39 H 1.08995 * 109.47148 * 299.99592 * 20 19 18 40 40 H 1.09006 * 109.47073 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47235 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.46707 * 59.99855 * 21 20 19 43 43 H 1.08997 * 109.47257 * 300.00013 * 22 21 20 44 44 H 1.09003 * 109.47037 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.47310 * 179.97438 * 23 22 21 46 46 H 1.09006 * 109.46942 * 59.99981 * 23 22 21 47 47 H 0.96696 * 113.99868 * 180.02562 * 26 24 12 48 48 H 1.09001 * 109.58759 * 6.57683 * 27 9 7 49 49 H 1.09007 * 109.58548 * 246.15599 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3548 10 6 1.8196 -3.6548 0.1786 11 6 2.0753 -4.6090 -0.9922 12 6 0.8198 -4.6886 -1.8639 13 1 -0.0192 -5.0358 -1.2609 14 7 1.0495 -5.6257 -2.9662 15 6 0.8495 -6.9456 -2.7812 16 8 0.4798 -7.3577 -1.7020 17 6 1.0862 -7.9098 -3.9149 18 6 0.7889 -9.3346 -3.4433 19 6 1.7913 -9.7322 -2.3580 20 6 1.4936 -11.1567 -1.8859 21 6 1.6125 -12.1210 -3.0679 22 6 0.6101 -11.7235 -4.1532 23 6 0.9078 -10.2989 -4.6253 24 6 0.5015 -3.3030 -2.4305 25 1 1.3502 -2.9445 -3.0131 26 8 -0.6530 -3.3842 -3.2687 27 6 0.2281 -2.3340 -1.2759 28 1 -0.4850 0.8400 -0.0004 29 1 2.7402 -3.5177 0.7459 30 1 1.0483 -4.0686 0.8282 31 1 2.3147 -5.6005 -0.6079 32 1 2.9091 -4.2382 -1.5884 33 1 1.3454 -5.2963 -3.8291 34 1 2.1254 -7.8435 -4.2373 35 1 0.4305 -7.6584 -4.7486 36 1 -0.2220 -9.3798 -3.0384 37 1 2.8023 -9.6870 -2.7630 38 1 1.7063 -9.0455 -1.5158 39 1 0.4828 -11.2015 -1.4808 40 1 2.2081 -11.4401 -1.1130 41 1 1.4009 -13.1360 -2.7315 42 1 2.6235 -12.0762 -3.4730 43 1 -0.4008 -11.7681 -3.7481 44 1 0.6952 -12.4102 -4.9954 45 1 0.1940 -10.0158 -5.3988 46 1 1.9188 -10.2542 -5.0304 47 1 -0.9127 -2.5404 -3.6631 48 1 0.0984 -1.3254 -1.6683 49 1 -0.6741 -2.6413 -0.7469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090057304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:11 Heat of formation + Delta-G solvation = -99.309356 kcal Electronic energy + Delta-G solvation = -26814.164200 eV Core-core repulsion = 23161.115376 eV Total energy + Delta-G solvation = -3653.048824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.04477 -38.62107 -37.55785 -35.27006 -34.28572 -32.82442 -32.06855 -30.80833 -29.60775 -28.88231 -27.18979 -24.95873 -22.76739 -22.56532 -22.03287 -21.34135 -20.04268 -19.82257 -19.31906 -17.19976 -16.60547 -16.50995 -15.96061 -15.46422 -15.21524 -14.82413 -14.35231 -14.24451 -14.11231 -13.84658 -13.67358 -13.44880 -13.16983 -12.79046 -12.50664 -12.29599 -12.18229 -12.02428 -11.97075 -11.69408 -11.63409 -11.24729 -11.17844 -11.04629 -10.82134 -10.79918 -10.54901 -10.41955 -10.33312 -10.22044 -10.13899 -10.01335 -9.71695 -9.46085 -9.22800 -8.69203 -8.51822 -6.78978 -5.87815 -3.31253 2.91140 3.32737 3.39189 3.39939 3.45621 4.40415 4.52406 4.57191 4.60538 4.64749 4.94893 4.99762 5.12104 5.24572 5.29383 5.37581 5.38745 5.40845 5.44055 5.47588 5.52371 5.56880 5.61786 5.64492 5.78632 5.90420 5.91771 6.00162 6.01350 6.07226 6.09709 6.10294 6.18149 6.24808 6.41436 6.43985 6.46660 6.52169 6.70495 6.90329 6.91457 7.11784 7.45061 7.70705 7.82024 8.09407 8.35292 8.53066 9.10478 9.73405 10.29741 11.20603 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033983 B = 0.002697 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.754926 B =10380.775102 C =10797.605236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.162 3.838 13 H 0.086 0.914 14 N -0.718 5.718 15 C 0.510 3.490 16 O -0.542 6.542 17 C -0.138 4.138 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.115 4.115 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C 0.148 3.852 28 H 0.256 0.744 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.375 0.625 48 H 0.093 0.907 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -18.103 -11.157 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.178 4.178 12 C 0.058 3.942 13 H 0.104 0.896 14 N -0.367 5.367 15 C 0.297 3.703 16 O -0.419 6.419 17 C -0.178 4.178 18 C -0.088 4.088 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.152 4.152 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.378 6.378 27 C 0.021 3.979 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.222 0.778 48 H 0.112 0.888 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.451 -18.870 -10.179 21.580 hybrid contribution 0.541 1.745 -0.640 1.936 sum 2.992 -17.125 -10.819 20.476 Atomic orbital electron populations 1.70023 1.05269 1.25818 1.53516 1.25078 0.95315 0.98556 1.00686 0.86342 0.78917 0.83151 0.78215 1.20997 1.21577 1.20754 1.19165 0.92831 0.84689 1.41881 0.91412 1.44000 1.35665 1.01773 1.49869 1.20939 0.98190 0.86334 0.92740 1.22399 0.96717 1.00132 0.98592 1.20950 0.98503 0.87132 0.87608 0.89561 1.46151 1.68648 1.06552 1.15384 1.20615 0.77051 0.82954 0.89728 1.90657 1.46398 1.77696 1.27170 1.21759 1.03557 0.94897 0.97597 1.20888 1.00939 0.91599 0.95405 1.21709 0.97732 0.96793 0.99507 1.21503 1.01747 0.95059 0.97205 1.21554 0.99321 0.98666 0.96195 1.21508 0.99522 0.96301 0.98249 1.21606 1.01579 0.94726 0.97336 1.22976 0.86983 0.95606 0.93330 0.93141 1.86413 1.48374 1.36557 1.66416 1.21416 0.89798 0.98253 0.88424 0.93421 0.92183 0.95863 0.91863 0.92128 0.77118 0.89306 0.89195 0.90430 0.92886 0.89712 0.92009 0.92335 0.92451 0.92255 0.92005 0.92301 0.92096 0.92057 0.77807 0.88849 0.95285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.19 55.49 0.62 -24.90 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 10 C 0.14 3.06 6.52 -3.71 -0.02 3.04 16 11 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 12 C 0.16 2.92 2.12 -67.89 -0.14 2.78 16 13 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 14 N -0.72 -10.55 4.92 -53.77 -0.26 -10.81 16 15 C 0.51 7.47 7.51 -10.99 -0.08 7.38 16 16 O -0.54 -9.86 13.63 5.55 0.08 -9.78 16 17 C -0.14 -1.43 5.18 -27.88 -0.14 -1.57 16 18 C -0.07 -0.73 1.84 -90.62 -0.17 -0.90 16 19 C -0.12 -1.34 4.94 -26.73 -0.13 -1.47 16 20 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 21 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 22 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 23 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 24 C 0.07 1.34 3.14 -26.61 -0.08 1.25 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -9.76 13.16 -35.23 -0.46 -10.22 16 27 C 0.15 3.42 4.94 -3.71 -0.02 3.41 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.40 4.87 8.60 -40.82 -0.35 4.52 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.19 5.95 -51.93 -0.31 0.88 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.38 5.11 9.08 45.56 0.41 5.53 16 48 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -30.75 375.71 -9.80 -40.55 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.09 Total: 8.80 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.79 Total: -0.38 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.16 Total: -50.65 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.39 Total: -20.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.75 -9.80 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.762 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds