Wall clock time and date at job start Fri Apr 10 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47072 * 239.99944 * 3 2 1 5 5 H 1.48496 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46733 * 120.00281 * 3 2 1 7 7 C 1.38811 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99771 * 197.36142 * 7 2 1 9 9 N 1.36934 * 120.00155 * 17.35466 * 7 2 1 10 10 C 1.46928 * 120.63125 * 207.66979 * 9 7 2 11 11 C 1.53194 * 108.77583 * 233.63215 * 10 9 7 12 12 C 1.53046 * 109.31472 * 305.36505 * 11 10 9 13 13 H 1.09002 * 109.44776 * 301.35263 * 12 11 10 14 14 N 1.46492 * 109.46270 * 181.38469 * 12 11 10 15 15 C 1.34775 * 119.99821 * 84.93416 * 14 12 11 16 16 O 1.21287 * 120.00490 * 359.97438 * 15 14 12 17 17 C 1.50700 * 120.00195 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47468 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47199 * 294.99770 * 18 17 15 20 20 C 1.52998 * 109.47199 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47178 * 59.99960 * 20 19 18 22 22 C 1.52994 * 109.47088 * 300.00108 * 21 20 19 23 23 C 1.52998 * 109.47199 * 59.99905 * 22 21 20 24 24 C 1.53041 * 109.53675 * 61.36000 * 12 11 10 25 25 H 1.09006 * 109.49406 * 58.59110 * 24 12 11 26 26 O 1.42900 * 109.49780 * 178.68502 * 24 12 11 27 27 C 1.46925 * 120.63196 * 27.69460 * 9 7 2 28 28 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58778 * 353.41855 * 10 9 7 30 30 H 1.09003 * 109.58773 * 113.70625 * 10 9 7 31 31 H 1.08998 * 109.49771 * 185.41881 * 11 10 9 32 32 H 1.08999 * 109.49670 * 65.31520 * 11 10 9 33 33 H 0.96998 * 120.00185 * 264.93237 * 14 12 11 34 34 H 1.09004 * 109.47245 * 59.99237 * 17 15 14 35 35 H 1.09004 * 109.47015 * 299.99907 * 17 15 14 36 36 H 1.08997 * 109.46928 * 54.99864 * 18 17 15 37 37 H 1.09006 * 109.47189 * 299.99868 * 19 18 17 38 38 H 1.08998 * 109.47232 * 59.99794 * 19 18 17 39 39 H 1.08995 * 109.47148 * 299.99592 * 20 19 18 40 40 H 1.09006 * 109.47073 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47235 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.46707 * 59.99855 * 21 20 19 43 43 H 1.08997 * 109.47257 * 300.00013 * 22 21 20 44 44 H 1.09003 * 109.47037 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.47310 * 179.97438 * 23 22 21 46 46 H 1.09006 * 109.46942 * 59.99981 * 23 22 21 47 47 H 0.96696 * 113.99868 * 180.02562 * 26 24 12 48 48 H 1.09001 * 109.58759 * 6.57683 * 27 9 7 49 49 H 1.09007 * 109.58548 * 246.15599 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3548 10 6 1.8196 -3.6548 0.1786 11 6 2.0753 -4.6090 -0.9922 12 6 0.8198 -4.6886 -1.8639 13 1 -0.0192 -5.0358 -1.2609 14 7 1.0495 -5.6257 -2.9662 15 6 0.8495 -6.9456 -2.7812 16 8 0.4798 -7.3577 -1.7020 17 6 1.0862 -7.9098 -3.9149 18 6 0.7889 -9.3346 -3.4433 19 6 1.7913 -9.7322 -2.3580 20 6 1.4936 -11.1567 -1.8859 21 6 1.6125 -12.1210 -3.0679 22 6 0.6101 -11.7235 -4.1532 23 6 0.9078 -10.2989 -4.6253 24 6 0.5015 -3.3030 -2.4305 25 1 1.3502 -2.9445 -3.0131 26 8 -0.6530 -3.3842 -3.2687 27 6 0.2281 -2.3340 -1.2759 28 1 -0.4850 0.8400 -0.0004 29 1 2.7402 -3.5177 0.7459 30 1 1.0483 -4.0686 0.8282 31 1 2.3147 -5.6005 -0.6079 32 1 2.9091 -4.2382 -1.5884 33 1 1.3454 -5.2963 -3.8291 34 1 2.1254 -7.8435 -4.2373 35 1 0.4305 -7.6584 -4.7486 36 1 -0.2220 -9.3798 -3.0384 37 1 2.8023 -9.6870 -2.7630 38 1 1.7063 -9.0455 -1.5158 39 1 0.4828 -11.2015 -1.4808 40 1 2.2081 -11.4401 -1.1130 41 1 1.4009 -13.1360 -2.7315 42 1 2.6235 -12.0762 -3.4730 43 1 -0.4008 -11.7681 -3.7481 44 1 0.6952 -12.4102 -4.9954 45 1 0.1940 -10.0158 -5.3988 46 1 1.9188 -10.2542 -5.0304 47 1 -0.9127 -2.5404 -3.6631 48 1 0.0984 -1.3254 -1.6683 49 1 -0.6741 -2.6413 -0.7469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090057304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:11 Heat of formation + Delta-G solvation = -120.109688 kcal Electronic energy + Delta-G solvation = -26815.066170 eV Core-core repulsion = 23161.115376 eV Total energy + Delta-G solvation = -3653.950795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23492 -39.83381 -38.74066 -36.90104 -35.76384 -34.03678 -33.48942 -31.53094 -31.28597 -30.53710 -28.26504 -26.68714 -24.21817 -23.59019 -23.41206 -22.44246 -21.35622 -20.85032 -20.54160 -18.94306 -18.12062 -17.79216 -17.38817 -16.69207 -16.33494 -16.13160 -15.69239 -15.54855 -15.19320 -15.06223 -14.96278 -14.84731 -14.42578 -14.30845 -13.87315 -13.59381 -13.38105 -13.23685 -13.10588 -12.95818 -12.81668 -12.61988 -12.56738 -12.46153 -12.09005 -12.04328 -11.93405 -11.89001 -11.80155 -11.39450 -11.29351 -11.18931 -10.98463 -10.86399 -10.60502 -10.45651 -9.95887 -8.78284 -7.91971 -5.39424 1.48828 1.49810 1.57541 1.76615 2.26241 2.48852 3.10915 3.25825 3.62517 3.74773 3.79883 3.87689 3.92510 4.06101 4.10331 4.28642 4.30125 4.37477 4.41119 4.44426 4.52355 4.60879 4.64738 4.70900 4.71335 4.80658 4.86482 4.90460 4.91961 4.94464 5.02710 5.09168 5.14290 5.23636 5.29875 5.31514 5.34386 5.37666 5.45325 5.52737 5.55061 5.62074 5.64267 5.66614 6.31635 6.68068 6.81416 7.08450 7.39520 7.75895 8.29188 9.14654 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033983 B = 0.002697 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.754926 B =10380.775102 C =10797.605236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.170 3.830 13 H 0.050 0.950 14 N -0.709 5.709 15 C 0.505 3.495 16 O -0.582 6.582 17 C -0.128 4.128 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.109 4.109 24 C 0.093 3.907 25 H 0.066 0.934 26 O -0.573 6.573 27 C 0.156 3.844 28 H 0.252 0.748 29 H 0.066 0.934 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.392 0.608 48 H 0.071 0.929 49 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -19.070 -13.832 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.397 4.397 8 H 0.090 0.910 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.161 4.161 12 C 0.065 3.935 13 H 0.068 0.932 14 N -0.360 5.360 15 C 0.293 3.707 16 O -0.463 6.463 17 C -0.167 4.167 18 C -0.087 4.087 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.146 4.146 24 C 0.032 3.968 25 H 0.084 0.916 26 O -0.380 6.380 27 C 0.029 3.971 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.241 0.759 48 H 0.089 0.911 49 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 4.320 -19.854 -12.896 24.066 hybrid contribution -0.095 2.004 0.277 2.025 sum 4.225 -17.850 -12.619 22.265 Atomic orbital electron populations 1.70190 1.06770 1.26213 1.54951 1.25860 0.96036 1.01699 1.00821 0.85286 0.77510 0.78798 0.78504 1.19867 1.22126 1.20288 1.19524 0.93220 0.85621 1.41370 0.90954 1.44252 1.35697 1.02362 1.50601 1.21038 0.97714 0.85758 0.93972 1.22177 0.97091 0.99405 0.97407 1.20572 0.97183 0.87454 0.88325 0.93161 1.45962 1.68655 1.06228 1.15114 1.21465 0.75769 0.83116 0.90335 1.90658 1.48051 1.78283 1.29272 1.21800 1.05764 0.93095 0.96085 1.20865 0.99150 0.92567 0.96167 1.21651 0.98689 0.96606 0.98665 1.21504 1.00843 0.95105 0.98196 1.21533 0.99980 0.98403 0.95433 1.21535 0.98882 0.96659 0.98656 1.21573 1.02798 0.93947 0.96305 1.22544 0.87891 0.94635 0.91757 0.91582 1.86392 1.47845 1.37915 1.65848 1.21230 0.88248 0.98188 0.89403 0.93881 0.91565 0.97620 0.91250 0.90692 0.75211 0.86509 0.86884 0.93108 0.91629 0.93190 0.93530 0.92282 0.91698 0.91329 0.92941 0.90577 0.90949 0.90594 0.75919 0.91055 0.98972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.28 11.19 21.65 0.24 -54.04 16 2 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 3 Si 0.97 43.39 29.59 68.60 2.03 45.42 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.27 -14.36 9.58 84.03 0.81 -13.55 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.60 -30.14 2.99 -699.09 -2.09 -32.24 16 10 C 0.14 6.08 6.52 86.36 0.56 6.64 16 11 C -0.12 -4.29 5.65 30.67 0.17 -4.11 16 12 C 0.17 6.09 2.12 45.02 0.10 6.19 16 13 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 14 N -0.71 -19.62 4.92 -442.40 -2.18 -21.80 16 15 C 0.50 14.21 7.51 87.66 0.66 14.86 16 16 O -0.58 -21.64 13.63 -3.05 -0.04 -21.68 16 17 C -0.13 -2.29 5.18 29.85 0.15 -2.14 16 18 C -0.07 -1.33 1.84 -10.80 -0.02 -1.35 16 19 C -0.12 -2.56 4.94 30.59 0.15 -2.41 16 20 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 21 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 22 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 23 C -0.11 -1.46 5.20 30.59 0.16 -1.31 16 24 C 0.09 3.40 3.14 30.67 0.10 3.50 16 25 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 26 O -0.57 -18.93 13.16 -148.98 -1.96 -20.90 16 27 C 0.16 7.44 4.94 86.36 0.43 7.86 16 28 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.41 8.85 8.60 -92.71 -0.80 8.05 16 34 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.05 1.26 7.95 -2.39 -0.02 1.24 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.05 1.44 5.95 -2.39 -0.01 1.42 16 39 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.39 10.19 9.08 -74.06 -0.67 9.52 16 48 H 0.07 3.70 6.04 -2.39 -0.01 3.68 16 49 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 Total: -1.00 -68.91 375.71 -0.31 -69.22 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.54 Total: 29.11 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.22 Total: 6.90 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.03 Total: -108.07 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -2.00 Total: -42.58 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.91 -0.31 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.887 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds