Wall clock time and date at job start Fri Apr 10 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48506 * 109.46971 * 240.00021 * 3 2 1 5 5 H 1.48500 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47413 * 119.99655 * 3 2 1 7 7 C 1.38811 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99760 * 197.36163 * 7 2 1 9 9 N 1.36935 * 119.99903 * 17.35823 * 7 2 1 10 10 C 1.46930 * 120.63006 * 207.69852 * 9 7 2 11 11 C 1.53193 * 108.77576 * 233.59058 * 10 9 7 12 12 C 1.53045 * 109.31098 * 305.36406 * 11 10 9 13 13 H 1.09002 * 109.44912 * 181.38245 * 12 11 10 14 14 N 1.46505 * 109.45493 * 301.34503 * 12 11 10 15 15 C 1.34776 * 120.00047 * 275.06275 * 14 12 11 16 16 O 1.21275 * 119.99807 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00050 * 180.02562 * 15 14 12 18 18 C 1.53002 * 109.47011 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.46878 * 294.99881 * 18 17 15 20 20 C 1.53002 * 109.46878 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47108 * 60.00273 * 20 19 18 22 22 C 1.53004 * 109.47045 * 300.00111 * 21 20 19 23 23 C 1.52997 * 109.46795 * 175.00197 * 18 17 15 24 24 C 1.53032 * 109.53717 * 61.36099 * 12 11 10 25 25 H 1.09004 * 109.49567 * 58.59267 * 24 12 11 26 26 O 1.42905 * 109.49640 * 178.68177 * 24 12 11 27 27 C 1.46920 * 120.63348 * 27.67822 * 9 7 2 28 28 H 0.96993 * 120.00469 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58736 * 353.37183 * 10 9 7 30 30 H 1.08993 * 109.58921 * 113.65581 * 10 9 7 31 31 H 1.08997 * 109.49915 * 185.41415 * 11 10 9 32 32 H 1.09002 * 109.50198 * 65.31369 * 11 10 9 33 33 H 0.97006 * 119.99794 * 95.34688 * 14 12 11 34 34 H 1.09003 * 109.46947 * 300.00238 * 17 15 14 35 35 H 1.08996 * 109.46700 * 60.00368 * 17 15 14 36 36 H 1.09001 * 109.47141 * 55.00353 * 18 17 15 37 37 H 1.08993 * 109.47347 * 300.00258 * 19 18 17 38 38 H 1.09001 * 109.47347 * 60.00747 * 19 18 17 39 39 H 1.09001 * 109.47141 * 300.00472 * 20 19 18 40 40 H 1.08994 * 109.47157 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47477 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47029 * 59.99796 * 21 20 19 43 43 H 1.09006 * 109.46793 * 300.00014 * 22 21 20 44 44 H 1.08998 * 109.47000 * 180.02562 * 22 21 20 45 45 H 1.09008 * 109.47149 * 299.99759 * 23 18 17 46 46 H 1.08997 * 109.47601 * 59.99576 * 23 18 17 47 47 H 0.96699 * 114.00041 * 180.02562 * 26 24 12 48 48 H 1.08996 * 109.58383 * 6.62190 * 27 9 7 49 49 H 1.09001 * 109.70554 * 246.27147 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2797 9 7 1.3724 -2.3612 -0.3528 10 6 1.8192 -3.6546 0.1823 11 6 2.0743 -4.6104 -0.9874 12 6 0.8186 -4.6906 -1.8586 13 1 0.9893 -5.3890 -2.6778 14 7 -0.3092 -5.1559 -1.0474 15 6 -0.5076 -6.4762 -0.8636 16 8 0.2477 -7.2791 -1.3693 17 6 -1.6680 -6.9549 -0.0297 18 6 -1.6643 -8.4841 0.0194 19 6 -1.9174 -9.0399 -1.3834 20 6 -1.9131 -10.5691 -1.3344 21 6 -3.0140 -11.0523 -0.3881 22 6 -2.7609 -10.4963 1.0147 23 6 -2.7656 -8.9666 0.9655 24 6 0.5008 -3.3057 -2.4269 25 1 1.3494 -2.9483 -3.0102 26 8 -0.6539 -3.3876 -3.2648 27 6 0.2280 -2.3351 -1.2737 28 1 -0.4850 0.8399 -0.0004 29 1 2.7400 -3.5171 0.7492 30 1 1.0480 -4.0671 0.8326 31 1 2.3135 -5.6015 -0.6018 32 1 2.9082 -4.2408 -1.5842 33 1 -0.9155 -4.5138 -0.6461 34 1 -1.5763 -6.5590 0.9817 35 1 -2.6014 -6.6075 -0.4727 36 1 -0.6968 -8.8337 0.3797 37 1 -2.8849 -8.6903 -1.7436 38 1 -1.1328 -8.6962 -2.0575 39 1 -0.9454 -10.9184 -0.9743 40 1 -2.0930 -10.9652 -2.3338 41 1 -3.0107 -12.1417 -0.3528 42 1 -3.9817 -10.7030 -0.7482 43 1 -1.7932 -10.8456 1.3748 44 1 -3.5450 -10.8409 1.6889 45 1 -2.5853 -8.5705 1.9650 46 1 -3.7331 -8.6170 0.6053 47 1 -0.9134 -2.5442 -3.6604 48 1 0.0987 -1.3269 -1.6673 49 1 -0.6757 -2.6397 -0.7457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090057308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:15 Heat of formation + Delta-G solvation = -97.300761 kcal Electronic energy + Delta-G solvation = -27212.503776 eV Core-core repulsion = 23559.542051 eV Total energy + Delta-G solvation = -3652.961725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03606 -38.67330 -37.46514 -35.29427 -34.03884 -32.72784 -31.87098 -30.73558 -29.72958 -28.92031 -27.02347 -25.24057 -22.67896 -22.49109 -22.00119 -21.59910 -20.20704 -19.70209 -18.68210 -17.10479 -16.75986 -16.52510 -15.54077 -15.25087 -15.21184 -14.93901 -14.29021 -14.17703 -14.08066 -13.93196 -13.70372 -13.56862 -13.19879 -12.79312 -12.40020 -12.29494 -12.11868 -12.01650 -11.84004 -11.69308 -11.52679 -11.16073 -11.08254 -11.01018 -10.96764 -10.83530 -10.47430 -10.46478 -10.27648 -10.21411 -10.05498 -10.01504 -9.63796 -9.37722 -9.24746 -8.64410 -8.49294 -6.80782 -5.91512 -3.34568 3.02704 3.31220 3.37394 3.38699 3.59682 4.38268 4.59401 4.61166 4.68451 4.71883 5.04925 5.09361 5.21198 5.23591 5.33729 5.39824 5.43196 5.46877 5.48820 5.57555 5.60167 5.65538 5.72576 5.76271 5.83358 5.87151 5.93061 5.96769 6.03704 6.07839 6.14384 6.15931 6.24504 6.26632 6.43580 6.45536 6.50867 6.54437 6.70810 6.80988 7.01142 7.04872 7.39139 7.68161 7.97016 8.08495 8.32149 8.64477 9.07210 9.70127 10.25887 11.16587 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.002986 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.789409 B = 9375.691361 C = 9585.878512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.146 3.854 11 C -0.144 4.144 12 C 0.166 3.834 13 H 0.077 0.923 14 N -0.707 5.707 15 C 0.513 3.487 16 O -0.551 6.551 17 C -0.139 4.139 18 C -0.068 4.068 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.116 4.116 24 C 0.066 3.934 25 H 0.060 0.940 26 O -0.573 6.573 27 C 0.147 3.853 28 H 0.255 0.745 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.375 0.625 48 H 0.092 0.908 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -15.324 -1.215 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.020 3.980 11 C -0.184 4.184 12 C 0.061 3.939 13 H 0.095 0.905 14 N -0.358 5.358 15 C 0.299 3.701 16 O -0.430 6.430 17 C -0.179 4.179 18 C -0.087 4.087 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.153 4.153 24 C 0.006 3.994 25 H 0.078 0.922 26 O -0.377 6.377 27 C 0.020 3.980 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.239 0.761 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.222 0.778 48 H 0.110 0.890 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.540 -16.355 -1.388 17.323 hybrid contribution 0.078 1.950 0.084 1.954 sum -5.461 -14.404 -1.304 15.460 Atomic orbital electron populations 1.70003 1.05244 1.25815 1.53650 1.25048 0.95326 0.98508 1.00674 0.86346 0.78936 0.83127 0.78237 1.20981 1.21592 1.20790 1.19168 0.92861 0.84695 1.41775 0.91464 1.43957 1.35671 1.01746 1.49824 1.20910 0.97842 0.86371 0.92888 1.22389 0.96573 1.00205 0.99230 1.20764 0.86074 0.94326 0.92765 0.90525 1.46051 1.30441 1.06935 1.52374 1.20578 0.86168 0.82354 0.80972 1.90612 1.47845 1.54027 1.50512 1.21754 0.97815 0.97456 1.00902 1.20871 0.99329 0.92404 0.96049 1.21706 1.02074 0.94791 0.97143 1.21500 0.98751 0.96310 0.98880 1.21555 0.99044 0.99655 0.95473 1.21517 1.01550 0.95646 0.96826 1.21622 0.98902 0.95540 0.99276 1.22938 0.87646 0.95972 0.92890 0.92194 1.86414 1.48265 1.36648 1.66410 1.21379 0.89456 0.98583 0.88593 0.93465 0.92587 0.96203 0.91757 0.91298 0.76072 0.89074 0.89196 0.90504 0.92869 0.89791 0.92096 0.92459 0.92524 0.92236 0.92056 0.92316 0.92009 0.91996 0.77808 0.89013 0.95772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 11.19 55.49 0.62 -24.08 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.67 9.59 -15.06 -0.14 -6.82 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -13.80 2.99 -172.33 -0.52 -14.31 16 10 C 0.15 2.96 6.25 -3.71 -0.02 2.94 16 11 C -0.14 -2.58 5.77 -26.61 -0.15 -2.73 16 12 C 0.17 2.96 2.47 -67.89 -0.17 2.79 16 13 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 14 N -0.71 -11.68 4.16 -53.76 -0.22 -11.90 16 15 C 0.51 8.09 7.51 -10.98 -0.08 8.01 16 16 O -0.55 -10.12 13.63 5.56 0.08 -10.04 16 17 C -0.14 -1.68 5.17 -27.88 -0.14 -1.83 16 18 C -0.07 -0.78 1.84 -90.62 -0.17 -0.94 16 19 C -0.12 -1.43 4.94 -26.73 -0.13 -1.56 16 20 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -1.03 5.93 -26.70 -0.16 -1.19 16 23 C -0.12 -1.09 5.21 -26.71 -0.14 -1.23 16 24 C 0.07 1.22 3.36 -26.62 -0.09 1.13 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 O -0.57 -9.71 13.21 -35.23 -0.47 -10.17 16 27 C 0.15 3.19 4.64 -3.72 -0.02 3.17 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 6.65 6.87 -40.82 -0.28 6.37 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.38 5.09 9.08 45.56 0.41 5.51 16 48 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 49 H 0.02 0.55 6.65 -51.93 -0.35 0.20 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -29.24 371.49 -9.68 -38.93 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.92 Total: 11.04 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.82 Total: -0.85 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.12 Total: -50.30 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.39 Total: -20.22 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.24 -9.68 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.375 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds