Wall clock time and date at job start Fri Apr 10 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48506 * 109.46971 * 240.00021 * 3 2 1 5 5 H 1.48500 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47413 * 119.99655 * 3 2 1 7 7 C 1.38811 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99760 * 197.36163 * 7 2 1 9 9 N 1.36935 * 119.99903 * 17.35823 * 7 2 1 10 10 C 1.46930 * 120.63006 * 207.69852 * 9 7 2 11 11 C 1.53193 * 108.77576 * 233.59058 * 10 9 7 12 12 C 1.53045 * 109.31098 * 305.36406 * 11 10 9 13 13 H 1.09002 * 109.44912 * 181.38245 * 12 11 10 14 14 N 1.46505 * 109.45493 * 301.34503 * 12 11 10 15 15 C 1.34776 * 120.00047 * 275.06275 * 14 12 11 16 16 O 1.21275 * 119.99807 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00050 * 180.02562 * 15 14 12 18 18 C 1.53002 * 109.47011 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.46878 * 294.99881 * 18 17 15 20 20 C 1.53002 * 109.46878 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47108 * 60.00273 * 20 19 18 22 22 C 1.53004 * 109.47045 * 300.00111 * 21 20 19 23 23 C 1.52997 * 109.46795 * 175.00197 * 18 17 15 24 24 C 1.53032 * 109.53717 * 61.36099 * 12 11 10 25 25 H 1.09004 * 109.49567 * 58.59267 * 24 12 11 26 26 O 1.42905 * 109.49640 * 178.68177 * 24 12 11 27 27 C 1.46920 * 120.63348 * 27.67822 * 9 7 2 28 28 H 0.96993 * 120.00469 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58736 * 353.37183 * 10 9 7 30 30 H 1.08993 * 109.58921 * 113.65581 * 10 9 7 31 31 H 1.08997 * 109.49915 * 185.41415 * 11 10 9 32 32 H 1.09002 * 109.50198 * 65.31369 * 11 10 9 33 33 H 0.97006 * 119.99794 * 95.34688 * 14 12 11 34 34 H 1.09003 * 109.46947 * 300.00238 * 17 15 14 35 35 H 1.08996 * 109.46700 * 60.00368 * 17 15 14 36 36 H 1.09001 * 109.47141 * 55.00353 * 18 17 15 37 37 H 1.08993 * 109.47347 * 300.00258 * 19 18 17 38 38 H 1.09001 * 109.47347 * 60.00747 * 19 18 17 39 39 H 1.09001 * 109.47141 * 300.00472 * 20 19 18 40 40 H 1.08994 * 109.47157 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47477 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47029 * 59.99796 * 21 20 19 43 43 H 1.09006 * 109.46793 * 300.00014 * 22 21 20 44 44 H 1.08998 * 109.47000 * 180.02562 * 22 21 20 45 45 H 1.09008 * 109.47149 * 299.99759 * 23 18 17 46 46 H 1.08997 * 109.47601 * 59.99576 * 23 18 17 47 47 H 0.96699 * 114.00041 * 180.02562 * 26 24 12 48 48 H 1.08996 * 109.58383 * 6.62190 * 27 9 7 49 49 H 1.09001 * 109.70554 * 246.27147 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2797 9 7 1.3724 -2.3612 -0.3528 10 6 1.8192 -3.6546 0.1823 11 6 2.0743 -4.6104 -0.9874 12 6 0.8186 -4.6906 -1.8586 13 1 0.9893 -5.3890 -2.6778 14 7 -0.3092 -5.1559 -1.0474 15 6 -0.5076 -6.4762 -0.8636 16 8 0.2477 -7.2791 -1.3693 17 6 -1.6680 -6.9549 -0.0297 18 6 -1.6643 -8.4841 0.0194 19 6 -1.9174 -9.0399 -1.3834 20 6 -1.9131 -10.5691 -1.3344 21 6 -3.0140 -11.0523 -0.3881 22 6 -2.7609 -10.4963 1.0147 23 6 -2.7656 -8.9666 0.9655 24 6 0.5008 -3.3057 -2.4269 25 1 1.3494 -2.9483 -3.0102 26 8 -0.6539 -3.3876 -3.2648 27 6 0.2280 -2.3351 -1.2737 28 1 -0.4850 0.8399 -0.0004 29 1 2.7400 -3.5171 0.7492 30 1 1.0480 -4.0671 0.8326 31 1 2.3135 -5.6015 -0.6018 32 1 2.9082 -4.2408 -1.5842 33 1 -0.9155 -4.5138 -0.6461 34 1 -1.5763 -6.5590 0.9817 35 1 -2.6014 -6.6075 -0.4727 36 1 -0.6968 -8.8337 0.3797 37 1 -2.8849 -8.6903 -1.7436 38 1 -1.1328 -8.6962 -2.0575 39 1 -0.9454 -10.9184 -0.9743 40 1 -2.0930 -10.9652 -2.3338 41 1 -3.0107 -12.1417 -0.3528 42 1 -3.9817 -10.7030 -0.7482 43 1 -1.7932 -10.8456 1.3748 44 1 -3.5450 -10.8409 1.6889 45 1 -2.5853 -8.5705 1.9650 46 1 -3.7331 -8.6170 0.6053 47 1 -0.9134 -2.5442 -3.6604 48 1 0.0987 -1.3269 -1.6673 49 1 -0.6757 -2.6397 -0.7457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090057308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:14 Heat of formation + Delta-G solvation = -115.588725 kcal Electronic energy + Delta-G solvation = -27213.296802 eV Core-core repulsion = 23559.542051 eV Total energy + Delta-G solvation = -3653.754751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33035 -39.87424 -38.66817 -36.85894 -35.61778 -33.85896 -33.39114 -31.53135 -31.37191 -30.50575 -28.13179 -26.98527 -24.10637 -23.56155 -23.42226 -22.82016 -21.35216 -20.56313 -20.21920 -18.83541 -18.11686 -18.01151 -16.84008 -16.74277 -16.40724 -16.19638 -15.77984 -15.51481 -15.25048 -15.15302 -14.93452 -14.80080 -14.50920 -14.26668 -13.86184 -13.51967 -13.35097 -13.22636 -12.98704 -12.86785 -12.84933 -12.65931 -12.62970 -12.44431 -12.19981 -11.97713 -11.93174 -11.82926 -11.80095 -11.29939 -11.26438 -11.18543 -10.94808 -10.86511 -10.57480 -10.47297 -9.91179 -8.71209 -7.90155 -5.35444 1.48450 1.50357 1.56642 1.77404 2.32555 2.49978 3.14230 3.26789 3.66854 3.75735 3.79260 3.87700 3.94725 4.11202 4.15832 4.26508 4.28720 4.36219 4.37903 4.46380 4.52125 4.60535 4.64694 4.70845 4.72229 4.78227 4.87225 4.90707 4.93103 4.96365 5.07859 5.10102 5.16505 5.23786 5.29954 5.32394 5.34425 5.37234 5.45096 5.56188 5.59041 5.65112 5.65465 5.67300 6.34554 6.66247 6.82151 7.12178 7.36389 7.80063 8.31704 9.15281 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.002986 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.789409 B = 9375.691361 C = 9585.878512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.043 4.043 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.131 4.131 12 C 0.169 3.831 13 H 0.070 0.930 14 N -0.707 5.707 15 C 0.509 3.491 16 O -0.578 6.578 17 C -0.134 4.134 18 C -0.064 4.064 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.111 4.111 24 C 0.084 3.916 25 H 0.058 0.942 26 O -0.573 6.573 27 C 0.159 3.841 28 H 0.252 0.748 29 H 0.054 0.946 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.404 0.596 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.391 0.609 48 H 0.064 0.936 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -16.092 -0.889 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.023 3.977 11 C -0.171 4.171 12 C 0.063 3.937 13 H 0.088 0.912 14 N -0.358 5.358 15 C 0.298 3.702 16 O -0.459 6.459 17 C -0.173 4.173 18 C -0.083 4.083 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.149 4.149 24 C 0.023 3.977 25 H 0.076 0.924 26 O -0.380 6.380 27 C 0.032 3.968 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.240 0.760 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.240 0.760 48 H 0.082 0.918 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.268 -17.135 -1.067 18.277 hybrid contribution 0.308 2.154 -0.036 2.177 sum -5.959 -14.981 -1.103 16.161 Atomic orbital electron populations 1.70129 1.06329 1.26060 1.54803 1.25702 0.96048 1.01155 1.00966 0.85404 0.77655 0.79506 0.78226 1.20547 1.21982 1.20439 1.19443 0.93072 0.85880 1.41325 0.91624 1.44160 1.35873 1.02148 1.50538 1.20953 0.97594 0.85510 0.93683 1.22235 0.96790 0.99732 0.98310 1.20636 0.86598 0.93661 0.92778 0.91188 1.46062 1.30095 1.07396 1.52287 1.21237 0.86686 0.81639 0.80659 1.90607 1.49085 1.54532 1.51635 1.21808 0.96672 0.97869 1.00971 1.20838 0.99330 0.91895 0.96265 1.21643 1.01127 0.95972 0.96798 1.21490 0.99069 0.95180 0.99659 1.21537 0.98450 1.00369 0.95030 1.21535 1.01899 0.95088 0.97044 1.21596 0.98234 0.96081 0.98984 1.22595 0.88012 0.95347 0.91786 0.92388 1.86393 1.47598 1.37980 1.65999 1.21182 0.88631 0.97818 0.89125 0.93917 0.92704 0.96233 0.91134 0.91014 0.75964 0.87556 0.87544 0.92434 0.92213 0.92957 0.93067 0.92122 0.91402 0.91631 0.92567 0.90705 0.91217 0.91080 0.76011 0.91756 0.96880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.15 11.19 21.65 0.24 -50.91 16 2 C -0.04 -2.24 4.91 84.86 0.42 -1.83 16 3 Si 0.96 42.79 29.59 68.60 2.03 44.82 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.27 -13.94 9.59 84.03 0.81 -13.14 16 8 H 0.07 3.38 7.89 -2.91 -0.02 3.35 16 9 N -0.60 -28.26 2.99 -699.12 -2.09 -30.35 16 10 C 0.15 5.93 6.25 86.36 0.54 6.47 16 11 C -0.13 -4.59 5.77 30.67 0.18 -4.41 16 12 C 0.17 5.93 2.47 45.02 0.11 6.04 16 13 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 14 N -0.71 -22.89 4.16 -442.40 -1.84 -24.73 16 15 C 0.51 15.76 7.51 87.66 0.66 16.41 16 16 O -0.58 -21.24 13.63 -3.01 -0.04 -21.28 16 17 C -0.13 -3.03 5.17 29.85 0.15 -2.88 16 18 C -0.06 -1.41 1.84 -10.80 -0.02 -1.43 16 19 C -0.12 -2.74 4.94 30.59 0.15 -2.59 16 20 C -0.12 -2.30 5.92 30.60 0.18 -2.12 16 21 C -0.12 -1.81 5.92 30.60 0.18 -1.63 16 22 C -0.12 -1.79 5.93 30.61 0.18 -1.61 16 23 C -0.11 -1.84 5.21 30.61 0.16 -1.68 16 24 C 0.08 3.04 3.36 30.67 0.10 3.14 16 25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 26 O -0.57 -18.84 13.21 -148.98 -1.97 -20.80 16 27 C 0.16 6.93 4.64 86.36 0.40 7.33 16 28 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 30 H 0.02 0.79 7.74 -2.39 -0.02 0.77 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.40 13.04 6.87 -92.70 -0.64 12.40 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.48 7.96 -2.39 -0.02 1.46 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.55 5.95 -2.39 -0.01 1.54 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.39 10.18 9.08 -74.06 -0.67 9.51 16 48 H 0.06 3.17 6.04 -2.39 -0.01 3.16 16 49 H 0.01 0.60 6.65 -2.39 -0.02 0.59 16 Total: -1.00 -61.93 371.49 0.16 -61.78 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.37 Total: 35.40 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.20 Total: 6.08 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -3.69 Total: -105.99 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -2.01 Total: -42.09 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -61.93 0.16 -61.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.813 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds