Wall clock time and date at job start Fri Apr 10 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36936 * 119.99952 * 342.59080 * 7 2 1 10 10 C 1.46927 * 120.63098 * 332.31423 * 9 7 2 11 11 C 1.53185 * 108.77426 * 233.58398 * 10 9 7 12 12 C 1.53039 * 109.31694 * 305.36611 * 11 10 9 13 13 H 1.09002 * 109.45821 * 301.34829 * 12 11 10 14 14 N 1.46501 * 109.46397 * 181.38709 * 12 11 10 15 15 C 1.34766 * 120.00027 * 84.99877 * 14 12 11 16 16 O 1.21281 * 120.00341 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99911 * 179.97438 * 15 14 12 18 18 C 1.53001 * 109.47043 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.47075 * 295.00048 * 18 17 15 20 20 C 1.53001 * 109.47075 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46841 * 60.00227 * 20 19 18 22 22 C 1.52999 * 109.47284 * 299.99576 * 21 20 19 23 23 C 1.52996 * 109.47203 * 175.00553 * 18 17 15 24 24 C 1.53349 * 109.60520 * 61.37040 * 12 11 10 25 25 H 1.09002 * 109.68449 * 178.75037 * 24 12 11 26 26 O 1.42904 * 109.47491 * 58.55647 * 24 12 11 27 27 C 1.46926 * 120.62909 * 152.29070 * 9 7 2 28 28 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58959 * 353.37429 * 10 9 7 30 30 H 1.09003 * 109.58553 * 113.80020 * 10 9 7 31 31 H 1.09005 * 109.49994 * 65.31862 * 11 10 9 32 32 H 1.09005 * 109.50164 * 185.37959 * 11 10 9 33 33 H 0.97003 * 119.99728 * 264.99916 * 14 12 11 34 34 H 1.08998 * 109.47139 * 300.00231 * 17 15 14 35 35 H 1.08999 * 109.46843 * 60.00461 * 17 15 14 36 36 H 1.08998 * 109.47471 * 54.99648 * 18 17 15 37 37 H 1.08999 * 109.47039 * 299.99743 * 19 18 17 38 38 H 1.09000 * 109.47168 * 60.00387 * 19 18 17 39 39 H 1.08996 * 109.47130 * 300.00296 * 20 19 18 40 40 H 1.09002 * 109.47098 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46927 * 179.97438 * 21 20 19 42 42 H 1.08996 * 109.47203 * 60.00113 * 21 20 19 43 43 H 1.08999 * 109.47094 * 300.00790 * 22 21 20 44 44 H 1.09000 * 109.47352 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.46806 * 299.99575 * 23 18 17 46 46 H 1.08998 * 109.47646 * 59.99202 * 23 18 17 47 47 H 0.96696 * 113.99890 * 180.37772 * 26 24 12 48 48 H 1.09005 * 109.58632 * 246.20265 * 27 9 7 49 49 H 1.08998 * 109.58689 * 6.48158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3725 -2.3611 0.3538 10 6 0.2288 -2.3345 1.2757 11 6 0.5025 -3.3048 2.4290 12 6 0.8196 -4.6899 1.8608 13 1 -0.0201 -5.0361 1.2582 14 7 1.0495 -5.6284 2.9621 15 6 0.0062 -6.2493 3.5471 16 8 -1.1229 -6.0316 3.1617 17 6 0.2428 -7.2151 4.6796 18 6 -1.0973 -7.7761 5.1597 19 6 -1.9375 -6.6468 5.7596 20 6 -3.2777 -7.2077 6.2391 21 6 -3.0308 -8.2798 7.3024 22 6 -2.1907 -9.4091 6.7026 23 6 -0.8499 -8.8478 6.2232 24 6 2.0770 -4.6119 0.9865 25 1 2.3168 -5.6021 0.5990 26 8 3.1711 -4.1270 1.7676 27 6 1.8186 -3.6548 -0.1812 28 1 -0.4849 0.8401 0.0004 29 1 0.1000 -1.3262 1.6692 30 1 -0.6739 -2.6407 0.7470 31 1 1.3518 -2.9473 3.0115 32 1 -0.3775 -3.3664 3.0694 33 1 1.9526 -5.8028 3.2701 34 1 0.8755 -8.0325 4.3338 35 1 0.7357 -6.6968 5.5021 36 1 -1.6297 -8.2166 4.3168 37 1 -1.4051 -6.2063 6.6026 38 1 -2.1138 -5.8832 5.0020 39 1 -3.8099 -7.6480 5.3960 40 1 -3.8761 -6.4033 6.6669 41 1 -3.9856 -8.6791 7.6444 42 1 -2.4986 -7.8395 8.1456 43 1 -2.7229 -9.8493 5.8594 44 1 -2.0144 -10.1727 7.4602 45 1 -0.2513 -9.6524 5.7958 46 1 -0.3174 -8.4073 7.0661 47 1 3.9999 -4.0464 1.2761 48 1 1.0455 -4.0686 -0.8287 49 1 2.7375 -3.5172 -0.7512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090057309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:19 Heat of formation + Delta-G solvation = -95.969247 kcal Electronic energy + Delta-G solvation = -26936.092801 eV Core-core repulsion = 23283.188815 eV Total energy + Delta-G solvation = -3652.903986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04705 -38.64349 -37.61942 -34.91953 -34.22826 -32.80232 -31.75513 -30.78853 -29.99424 -28.83750 -27.16026 -24.89051 -22.73471 -22.44016 -22.13126 -21.33106 -19.97651 -19.80858 -19.29096 -17.23470 -16.68035 -16.15489 -15.74737 -15.45580 -15.15124 -14.67367 -14.35534 -14.26853 -14.16809 -14.03953 -13.74033 -13.44600 -13.11180 -12.89567 -12.44691 -12.26696 -12.17664 -12.06013 -11.89576 -11.67829 -11.21788 -11.19580 -11.03595 -11.00428 -10.82839 -10.68480 -10.53302 -10.38028 -10.26555 -10.18899 -10.10713 -10.02419 -9.71717 -9.41220 -9.24013 -8.62807 -8.38248 -6.66577 -5.77953 -3.19898 2.89523 3.37379 3.45261 3.45676 3.47798 4.48206 4.53522 4.60882 4.61804 4.72276 4.95015 5.00842 5.12542 5.23845 5.30144 5.37233 5.38804 5.39295 5.41847 5.48007 5.52482 5.57654 5.62861 5.63685 5.78044 5.79178 5.91760 5.98615 6.01756 6.09185 6.11120 6.20400 6.27160 6.39544 6.44555 6.48015 6.54507 6.59198 6.67394 6.84583 6.98833 7.41962 7.68652 7.79337 7.83656 8.09548 8.44766 8.53034 9.20465 9.83513 10.39813 11.30492 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002889 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.792998 B = 9689.067811 C =10327.394568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.174 3.826 11 C -0.142 4.142 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.722 5.722 15 C 0.507 3.493 16 O -0.540 6.540 17 C -0.138 4.138 18 C -0.069 4.069 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.115 4.115 24 C 0.082 3.918 25 H 0.045 0.955 26 O -0.555 6.555 27 C 0.118 3.882 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.019 0.981 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.399 0.601 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.372 0.628 48 H 0.026 0.974 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -18.230 11.718 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.048 3.952 11 C -0.182 4.182 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.372 5.372 15 C 0.293 3.707 16 O -0.417 6.417 17 C -0.178 4.178 18 C -0.088 4.088 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.152 4.152 24 C 0.020 3.980 25 H 0.063 0.937 26 O -0.360 6.360 27 C -0.010 4.010 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.233 0.767 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.218 0.782 48 H 0.044 0.956 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.617 -17.898 11.887 21.494 hybrid contribution 1.337 0.788 -0.332 1.588 sum 0.720 -17.109 11.554 20.658 Atomic orbital electron populations 1.70041 1.05270 1.25526 1.53712 1.25035 0.95274 0.98434 1.00969 0.86288 0.79220 0.83764 0.77517 1.21534 1.21569 1.20458 1.19108 0.92543 0.84806 1.41452 0.91837 1.43906 1.35796 1.00864 1.49839 1.20774 0.88345 0.98434 0.87668 1.22467 1.00579 0.94630 1.00558 1.21044 0.96130 0.89880 0.87149 0.89326 1.46252 1.09561 1.44743 1.36669 1.20660 0.85096 0.81241 0.83671 1.90670 1.22499 1.64554 1.63988 1.21763 0.99855 0.98786 0.97402 1.20891 0.94254 0.95742 0.97915 1.21718 0.95211 0.98287 1.00622 1.21502 0.97652 0.97957 0.98389 1.21556 0.99464 0.96414 0.98321 1.21517 0.96153 0.97567 1.00314 1.21616 0.97184 0.97924 0.98514 1.22685 0.86759 0.95573 0.92949 0.93745 1.86443 1.20370 1.89148 1.40017 1.21535 0.98623 0.88129 0.92693 0.93604 0.89205 0.96320 0.91688 0.93097 0.76677 0.89328 0.89201 0.90464 0.92831 0.89644 0.92028 0.92283 0.92453 0.92236 0.92030 0.92319 0.92160 0.92017 0.78185 0.95602 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.19 55.49 0.62 -25.79 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.58 -14.41 2.94 -172.32 -0.51 -14.91 16 10 C 0.17 4.29 5.31 -3.71 -0.02 4.27 16 11 C -0.14 -2.95 5.51 -26.62 -0.15 -3.09 16 12 C 0.16 2.87 2.20 -67.73 -0.15 2.72 16 13 H 0.09 1.73 7.57 -51.93 -0.39 1.33 16 14 N -0.72 -10.46 5.05 -53.61 -0.27 -10.74 16 15 C 0.51 7.36 7.51 -10.99 -0.08 7.28 16 16 O -0.54 -9.84 13.63 5.56 0.08 -9.76 16 17 C -0.14 -1.42 5.17 -27.88 -0.14 -1.56 16 18 C -0.07 -0.73 1.84 -90.62 -0.17 -0.89 16 19 C -0.12 -1.41 4.94 -26.73 -0.13 -1.55 16 20 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -0.95 5.93 -26.70 -0.16 -1.10 16 23 C -0.11 -0.95 5.21 -26.70 -0.14 -1.09 16 24 C 0.08 1.35 3.40 -26.45 -0.09 1.26 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 O -0.56 -8.96 12.10 -35.23 -0.43 -9.38 16 27 C 0.12 2.36 6.15 -3.71 -0.02 2.34 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.41 7.62 -51.93 -0.40 1.02 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.40 4.95 8.26 -40.82 -0.34 4.62 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.27 5.95 -51.93 -0.31 0.96 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.37 4.75 9.08 45.56 0.41 5.16 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -31.59 374.07 -9.75 -41.34 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.05 Total: 7.80 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.80 Total: -0.92 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.16 Total: -51.44 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.35 Total: -19.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.59 -9.75 -41.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.628 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds