Wall clock time and date at job start Fri Apr 10 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36936 * 119.99952 * 342.59080 * 7 2 1 10 10 C 1.46927 * 120.63098 * 332.31423 * 9 7 2 11 11 C 1.53185 * 108.77426 * 233.58398 * 10 9 7 12 12 C 1.53039 * 109.31694 * 305.36611 * 11 10 9 13 13 H 1.09002 * 109.45821 * 301.34829 * 12 11 10 14 14 N 1.46501 * 109.46397 * 181.38709 * 12 11 10 15 15 C 1.34766 * 120.00027 * 84.99877 * 14 12 11 16 16 O 1.21281 * 120.00341 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99911 * 179.97438 * 15 14 12 18 18 C 1.53001 * 109.47043 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.47075 * 295.00048 * 18 17 15 20 20 C 1.53001 * 109.47075 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46841 * 60.00227 * 20 19 18 22 22 C 1.52999 * 109.47284 * 299.99576 * 21 20 19 23 23 C 1.52996 * 109.47203 * 175.00553 * 18 17 15 24 24 C 1.53349 * 109.60520 * 61.37040 * 12 11 10 25 25 H 1.09002 * 109.68449 * 178.75037 * 24 12 11 26 26 O 1.42904 * 109.47491 * 58.55647 * 24 12 11 27 27 C 1.46926 * 120.62909 * 152.29070 * 9 7 2 28 28 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58959 * 353.37429 * 10 9 7 30 30 H 1.09003 * 109.58553 * 113.80020 * 10 9 7 31 31 H 1.09005 * 109.49994 * 65.31862 * 11 10 9 32 32 H 1.09005 * 109.50164 * 185.37959 * 11 10 9 33 33 H 0.97003 * 119.99728 * 264.99916 * 14 12 11 34 34 H 1.08998 * 109.47139 * 300.00231 * 17 15 14 35 35 H 1.08999 * 109.46843 * 60.00461 * 17 15 14 36 36 H 1.08998 * 109.47471 * 54.99648 * 18 17 15 37 37 H 1.08999 * 109.47039 * 299.99743 * 19 18 17 38 38 H 1.09000 * 109.47168 * 60.00387 * 19 18 17 39 39 H 1.08996 * 109.47130 * 300.00296 * 20 19 18 40 40 H 1.09002 * 109.47098 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46927 * 179.97438 * 21 20 19 42 42 H 1.08996 * 109.47203 * 60.00113 * 21 20 19 43 43 H 1.08999 * 109.47094 * 300.00790 * 22 21 20 44 44 H 1.09000 * 109.47352 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.46806 * 299.99575 * 23 18 17 46 46 H 1.08998 * 109.47646 * 59.99202 * 23 18 17 47 47 H 0.96696 * 113.99890 * 180.37772 * 26 24 12 48 48 H 1.09005 * 109.58632 * 246.20265 * 27 9 7 49 49 H 1.08998 * 109.58689 * 6.48158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3725 -2.3611 0.3538 10 6 0.2288 -2.3345 1.2757 11 6 0.5025 -3.3048 2.4290 12 6 0.8196 -4.6899 1.8608 13 1 -0.0201 -5.0361 1.2582 14 7 1.0495 -5.6284 2.9621 15 6 0.0062 -6.2493 3.5471 16 8 -1.1229 -6.0316 3.1617 17 6 0.2428 -7.2151 4.6796 18 6 -1.0973 -7.7761 5.1597 19 6 -1.9375 -6.6468 5.7596 20 6 -3.2777 -7.2077 6.2391 21 6 -3.0308 -8.2798 7.3024 22 6 -2.1907 -9.4091 6.7026 23 6 -0.8499 -8.8478 6.2232 24 6 2.0770 -4.6119 0.9865 25 1 2.3168 -5.6021 0.5990 26 8 3.1711 -4.1270 1.7676 27 6 1.8186 -3.6548 -0.1812 28 1 -0.4849 0.8401 0.0004 29 1 0.1000 -1.3262 1.6692 30 1 -0.6739 -2.6407 0.7470 31 1 1.3518 -2.9473 3.0115 32 1 -0.3775 -3.3664 3.0694 33 1 1.9526 -5.8028 3.2701 34 1 0.8755 -8.0325 4.3338 35 1 0.7357 -6.6968 5.5021 36 1 -1.6297 -8.2166 4.3168 37 1 -1.4051 -6.2063 6.6026 38 1 -2.1138 -5.8832 5.0020 39 1 -3.8099 -7.6480 5.3960 40 1 -3.8761 -6.4033 6.6669 41 1 -3.9856 -8.6791 7.6444 42 1 -2.4986 -7.8395 8.1456 43 1 -2.7229 -9.8493 5.8594 44 1 -2.0144 -10.1727 7.4602 45 1 -0.2513 -9.6524 5.7958 46 1 -0.3174 -8.4073 7.0661 47 1 3.9999 -4.0464 1.2761 48 1 1.0455 -4.0686 -0.8287 49 1 2.7375 -3.5172 -0.7512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090057309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:18 Heat of formation + Delta-G solvation = -117.767922 kcal Electronic energy + Delta-G solvation = -26937.038063 eV Core-core repulsion = 23283.188815 eV Total energy + Delta-G solvation = -3653.849248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23276 -39.85325 -38.76204 -36.58779 -35.61138 -33.84836 -33.42883 -31.69691 -31.53715 -30.42917 -28.24855 -26.64325 -24.07608 -23.73804 -23.43841 -22.43277 -21.26101 -20.79299 -20.54305 -19.02516 -17.84990 -17.54520 -17.30002 -16.53919 -16.34000 -16.15979 -15.82526 -15.46178 -15.37197 -15.07217 -14.96175 -14.89427 -14.50251 -14.32842 -13.77542 -13.66864 -13.28680 -13.06799 -13.00599 -12.84394 -12.75107 -12.62113 -12.50731 -12.39980 -12.08474 -12.06952 -11.94798 -11.88780 -11.80776 -11.41364 -11.30347 -11.20181 -10.89036 -10.85983 -10.52673 -10.45060 -9.92172 -8.68709 -7.87357 -5.32172 1.45790 1.48315 1.57932 1.75309 2.28191 2.50748 3.27914 3.39755 3.62433 3.75339 3.80959 3.86339 3.87137 4.06389 4.09305 4.27512 4.29242 4.35896 4.37930 4.52041 4.60208 4.63917 4.69508 4.69963 4.75622 4.82885 4.86375 4.87836 4.90506 4.97164 5.00343 5.08921 5.12167 5.23359 5.28807 5.33791 5.36799 5.44530 5.44895 5.54387 5.62465 5.64227 5.66084 5.68000 6.36721 6.70376 6.99047 7.13220 7.40359 7.83024 8.35658 9.19595 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002889 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.792998 B = 9689.067811 C =10327.394568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.058 4.058 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.598 5.598 10 C 0.184 3.816 11 C -0.123 4.123 12 C 0.168 3.832 13 H 0.068 0.932 14 N -0.711 5.711 15 C 0.501 3.499 16 O -0.582 6.582 17 C -0.128 4.128 18 C -0.067 4.067 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.108 4.108 24 C 0.101 3.899 25 H 0.086 0.914 26 O -0.563 6.563 27 C 0.110 3.890 28 H 0.248 0.752 29 H 0.053 0.947 30 H -0.011 1.011 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.415 0.585 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.390 0.610 48 H 0.020 0.980 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -20.583 13.136 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.253 4.253 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.057 3.943 11 C -0.163 4.163 12 C 0.062 3.938 13 H 0.087 0.913 14 N -0.362 5.362 15 C 0.290 3.710 16 O -0.462 6.462 17 C -0.167 4.167 18 C -0.086 4.086 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.146 4.146 24 C 0.040 3.960 25 H 0.104 0.896 26 O -0.370 6.370 27 C -0.017 4.017 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.007 0.993 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.251 0.749 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.239 0.761 48 H 0.038 0.962 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.173 -20.297 13.311 24.369 hybrid contribution 0.453 1.498 -0.809 1.762 sum 2.626 -18.799 12.502 22.729 Atomic orbital electron populations 1.70213 1.06905 1.25745 1.55756 1.25850 0.95986 1.01783 1.01653 0.85246 0.78226 0.79549 0.77328 1.21188 1.22426 1.19108 1.19522 0.93069 0.85763 1.39929 0.90808 1.44105 1.35465 1.02220 1.50310 1.20452 0.87808 0.97338 0.88708 1.22163 0.99696 0.95887 0.98587 1.20695 0.96515 0.88514 0.88040 0.91344 1.46044 1.10551 1.43828 1.35803 1.21522 0.84203 0.81224 0.84052 1.90674 1.24337 1.65908 1.65329 1.21805 1.00323 0.98605 0.96014 1.20867 0.93956 0.95846 0.97980 1.21667 0.96408 0.98046 0.99738 1.21500 0.96850 0.98569 0.98704 1.21535 1.00262 0.95940 0.97648 1.21543 0.95890 0.97632 1.00585 1.21583 0.97606 0.97442 0.97950 1.22395 0.86367 0.96295 0.90963 0.89637 1.86407 1.21024 1.89225 1.40331 1.21816 0.98873 0.86664 0.94338 0.94293 0.92882 0.99297 0.92301 0.94166 0.74873 0.86125 0.87155 0.92581 0.92089 0.93546 0.93256 0.92650 0.91641 0.91573 0.92659 0.90508 0.90493 0.90899 0.76092 0.96176 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 11.19 21.65 0.24 -57.12 16 2 C -0.06 -3.28 4.91 84.87 0.42 -2.87 16 3 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.25 -13.75 9.58 84.04 0.81 -12.94 16 8 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 9 N -0.60 -29.96 2.94 -699.11 -2.05 -32.02 16 10 C 0.18 9.51 5.31 86.36 0.46 9.96 16 11 C -0.12 -5.23 5.51 30.67 0.17 -5.06 16 12 C 0.17 5.85 2.20 45.12 0.10 5.95 16 13 H 0.07 2.71 7.57 -2.39 -0.02 2.69 16 14 N -0.71 -19.26 5.05 -441.92 -2.23 -21.49 16 15 C 0.50 14.03 7.51 87.66 0.66 14.69 16 16 O -0.58 -21.83 13.63 -3.03 -0.04 -21.87 16 17 C -0.13 -2.27 5.17 29.85 0.15 -2.12 16 18 C -0.07 -1.32 1.84 -10.79 -0.02 -1.34 16 19 C -0.12 -2.83 4.94 30.60 0.15 -2.68 16 20 C -0.12 -2.46 5.92 30.60 0.18 -2.28 16 21 C -0.12 -1.78 5.92 30.60 0.18 -1.60 16 22 C -0.12 -1.61 5.93 30.61 0.18 -1.43 16 23 C -0.11 -1.44 5.21 30.61 0.16 -1.28 16 24 C 0.10 3.08 3.40 30.77 0.10 3.19 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 O -0.56 -16.32 12.10 -148.98 -1.80 -18.13 16 27 C 0.11 4.25 6.15 86.36 0.53 4.79 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.05 3.11 6.04 -2.39 -0.01 3.10 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.06 2.57 7.62 -2.38 -0.02 2.55 16 32 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.41 8.85 8.26 -92.71 -0.77 8.09 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.34 7.95 -2.39 -0.02 1.32 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.45 5.95 -2.39 -0.01 1.44 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.39 8.42 9.08 -74.06 -0.67 7.74 16 48 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 Total: -1.00 -72.35 374.07 -0.13 -72.48 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.51 Total: 25.76 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.23 Total: 4.99 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -4.04 Total: -110.63 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.84 Total: -40.00 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.35 -0.13 -72.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.284 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds