Wall clock time and date at job start Fri Apr 10 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00481 * 2 1 4 4 H 1.48506 * 109.46655 * 272.94497 * 3 2 1 5 5 H 1.48501 * 109.47074 * 32.94231 * 3 2 1 6 6 H 1.48503 * 109.47333 * 152.94616 * 3 2 1 7 7 C 1.38816 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 339.34636 * 7 2 1 9 9 N 1.36936 * 119.99648 * 159.34041 * 7 2 1 10 10 C 1.46929 * 120.62829 * 152.61098 * 9 7 2 11 11 C 1.53163 * 108.76949 * 126.41150 * 10 9 7 12 12 C 1.53036 * 109.32516 * 54.64463 * 11 10 9 13 13 H 1.09005 * 109.46255 * 58.64071 * 12 11 10 14 14 N 1.46504 * 109.46127 * 178.61402 * 12 11 10 15 15 C 1.34776 * 119.99791 * 275.02959 * 14 12 11 16 16 O 1.21286 * 120.00192 * 359.97438 * 15 14 12 17 17 C 1.50705 * 119.99988 * 179.97438 * 15 14 12 18 18 C 1.52999 * 109.47231 * 180.02562 * 17 15 14 19 19 C 1.53011 * 109.46861 * 294.99746 * 18 17 15 20 20 C 1.52995 * 109.47147 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47075 * 59.99924 * 20 19 18 22 22 C 1.53003 * 109.47025 * 299.99857 * 21 20 19 23 23 C 1.52994 * 109.47301 * 174.99963 * 18 17 15 24 24 C 1.53034 * 109.52933 * 298.62590 * 12 11 10 25 25 H 1.08994 * 109.50020 * 301.41210 * 24 12 11 26 26 O 1.42900 * 109.50083 * 181.34004 * 24 12 11 27 27 C 1.46922 * 120.63538 * 332.63377 * 9 7 2 28 28 H 0.97010 * 119.99682 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58594 * 246.20478 * 10 9 7 30 30 H 1.09003 * 109.58744 * 6.62573 * 10 9 7 31 31 H 1.09002 * 109.50119 * 294.68461 * 11 10 9 32 32 H 1.09003 * 109.47451 * 174.59312 * 11 10 9 33 33 H 0.96990 * 119.99973 * 95.02428 * 14 12 11 34 34 H 1.08996 * 109.47015 * 299.99864 * 17 15 14 35 35 H 1.08998 * 109.46998 * 59.99775 * 17 15 14 36 36 H 1.08995 * 109.47314 * 54.99173 * 18 17 15 37 37 H 1.09002 * 109.46736 * 300.00475 * 19 18 17 38 38 H 1.08993 * 109.46838 * 60.00196 * 19 18 17 39 39 H 1.09000 * 109.46845 * 300.00110 * 20 19 18 40 40 H 1.08996 * 109.47393 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.46961 * 180.02562 * 21 20 19 42 42 H 1.08991 * 109.47320 * 60.00275 * 21 20 19 43 43 H 1.08999 * 109.47461 * 299.99697 * 22 21 20 44 44 H 1.09007 * 109.46677 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47012 * 300.00144 * 23 18 17 46 46 H 1.09004 * 109.47394 * 59.99461 * 23 18 17 47 47 H 0.96700 * 113.99993 * 179.97438 * 26 24 12 48 48 H 1.08996 * 109.58584 * 113.79562 * 27 9 7 49 49 H 1.09001 * 109.70444 * 353.44332 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4355 2.0822 -1.3983 5 1 1.4803 2.6339 0.7614 6 1 3.5776 1.4228 0.6368 7 6 2.0102 -1.2022 0.0005 8 1 1.5221 -2.1073 0.3308 9 7 3.3135 -1.2406 -0.4179 10 6 4.2349 -2.2631 0.0961 11 6 4.8747 -2.9909 -1.0900 12 6 5.5287 -1.9662 -2.0198 13 1 6.2779 -1.3999 -1.4666 14 7 6.1702 -2.6617 -3.1384 15 6 7.4208 -3.1456 -3.0028 16 8 8.0152 -3.0049 -1.9550 17 6 8.0806 -3.8615 -4.1531 18 6 9.4846 -4.3068 -3.7390 19 6 10.3536 -3.0750 -3.4768 20 6 11.7577 -3.5201 -3.0633 21 6 12.3797 -4.3537 -4.1855 22 6 11.5107 -5.5854 -4.4475 23 6 10.1068 -5.1405 -4.8607 24 6 4.4620 -1.0102 -2.5584 25 1 3.6993 -1.5785 -3.0907 26 8 5.0682 -0.0731 -3.4509 27 6 3.8172 -0.2597 -1.3888 28 1 -0.4850 0.8402 -0.0004 29 1 5.0114 -1.7874 0.6951 30 1 3.6839 -2.9768 0.7086 31 1 4.1082 -3.5406 -1.6362 32 1 5.6311 -3.6857 -0.7250 33 1 5.6950 -2.7739 -3.9764 34 1 7.4883 -4.7351 -4.4251 35 1 8.1497 -3.1889 -5.0080 36 1 9.4224 -4.9072 -2.8315 37 1 10.4157 -2.4744 -4.3844 38 1 9.9103 -2.4810 -2.6777 39 1 11.6959 -4.1210 -2.1559 40 1 12.3770 -2.6427 -2.8770 41 1 13.3798 -4.6712 -3.8907 42 1 12.4416 -3.7530 -5.0928 43 1 11.4489 -6.1863 -3.5402 44 1 11.9536 -6.1790 -5.2474 45 1 9.4877 -6.0180 -5.0475 46 1 10.1690 -4.5400 -5.7682 47 1 4.4491 0.5649 -3.8313 48 1 4.5596 0.3794 -0.9109 49 1 2.9923 0.3505 -1.7565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090057311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:23 Heat of formation + Delta-G solvation = -116.076804 kcal Electronic energy + Delta-G solvation = -26911.699317 eV Core-core repulsion = 23257.923402 eV Total energy + Delta-G solvation = -3653.775916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28369 -39.97891 -38.80269 -37.04868 -35.80959 -34.13699 -33.56878 -31.84643 -31.54228 -30.74054 -28.30733 -26.58549 -24.65778 -23.57170 -23.38167 -22.50339 -21.39864 -21.00603 -20.56055 -19.02482 -18.30947 -17.82850 -17.69244 -16.68610 -16.37281 -16.18675 -16.11936 -15.43521 -15.28780 -15.09691 -14.92483 -14.86082 -14.66273 -14.44585 -14.14665 -14.01939 -13.73482 -13.26036 -13.10743 -12.96964 -12.86363 -12.71276 -12.50778 -12.45562 -12.37069 -12.01424 -11.94373 -11.80739 -11.74448 -11.41653 -11.30063 -11.21338 -11.11775 -10.88860 -10.76007 -10.47056 -9.97755 -9.04150 -8.20890 -5.54602 1.23489 1.39917 1.47813 1.75528 2.22749 2.35846 2.87053 3.12175 3.31974 3.74105 3.76169 3.80787 3.87240 3.99538 4.05834 4.08369 4.23253 4.28647 4.33388 4.36582 4.49926 4.55809 4.61188 4.65293 4.67782 4.70454 4.76252 4.82221 4.87156 4.88708 4.90714 4.91289 4.99152 5.08149 5.22883 5.29004 5.29392 5.33791 5.36965 5.44437 5.51185 5.62080 5.65878 5.80015 6.08722 6.65825 6.70231 6.85513 7.37582 7.53813 7.93907 8.98412 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.002840 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.694441 B = 9855.975687 C = 9998.446004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.028 4.028 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.310 1.310 6 H -0.272 1.272 7 C -0.251 4.251 8 H 0.060 0.940 9 N -0.614 5.614 10 C 0.144 3.856 11 C -0.125 4.125 12 C 0.168 3.832 13 H 0.062 0.938 14 N -0.710 5.710 15 C 0.506 3.494 16 O -0.580 6.580 17 C -0.129 4.129 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.109 4.109 24 C 0.098 3.902 25 H 0.071 0.929 26 O -0.569 6.569 27 C 0.097 3.903 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.393 0.607 48 H 0.029 0.971 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.926 -9.312 -14.906 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.339 5.339 10 C 0.018 3.982 11 C -0.165 4.165 12 C 0.063 3.937 13 H 0.080 0.920 14 N -0.360 5.360 15 C 0.295 3.705 16 O -0.460 6.460 17 C -0.169 4.169 18 C -0.087 4.087 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.147 4.147 24 C 0.036 3.964 25 H 0.089 0.911 26 O -0.376 6.376 27 C -0.029 4.029 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.243 0.757 48 H 0.047 0.953 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.753 -9.465 -14.017 27.555 hybrid contribution -1.016 1.472 0.276 1.809 sum 20.737 -7.994 -13.741 26.129 Atomic orbital electron populations 1.69945 1.07199 1.27321 1.55106 1.25850 0.95792 1.00580 1.00163 0.86034 0.78349 0.80702 0.78041 1.19182 1.23869 1.19730 1.18878 0.86227 0.93885 1.39055 0.92227 1.44414 1.08031 1.34417 1.47077 1.21086 0.91866 0.90762 0.94453 1.22207 0.99687 0.97703 0.96924 1.20595 0.93292 0.91875 0.87971 0.92007 1.45938 1.16005 1.57526 1.16571 1.21414 0.80796 0.78201 0.90089 1.90659 1.64293 1.59470 1.31558 1.21801 0.96945 1.02011 0.96096 1.20864 0.92424 0.96601 0.98779 1.21654 0.95415 0.97565 1.01031 1.21498 0.95978 0.99557 0.98565 1.21535 0.98692 0.96793 0.98388 1.21528 0.95384 0.97332 1.01470 1.21565 0.96119 0.99581 0.97405 1.22393 0.93726 0.90119 0.90129 0.91126 1.86427 1.40420 1.47857 1.62900 1.22043 0.97217 0.92699 0.90924 0.92745 0.95435 0.91368 0.90984 0.90677 0.75169 0.86468 0.87033 0.92608 0.92036 0.93267 0.93268 0.92457 0.91689 0.91533 0.92722 0.90659 0.90750 0.90880 0.75693 0.95337 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 13.97 21.65 0.30 -57.69 16 2 C -0.03 -1.61 5.23 84.86 0.44 -1.17 16 3 Si 0.94 45.52 24.35 68.60 1.67 47.19 16 4 H -0.27 -11.70 6.62 99.48 0.66 -11.04 16 5 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 6 H -0.27 -13.16 6.64 99.48 0.66 -12.50 16 7 C -0.25 -13.85 10.04 84.03 0.84 -13.00 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 9 N -0.61 -28.30 2.77 -699.14 -1.94 -30.23 16 10 C 0.14 5.64 6.51 86.35 0.56 6.20 16 11 C -0.13 -4.08 5.65 30.66 0.17 -3.90 16 12 C 0.17 5.36 2.12 45.01 0.10 5.46 16 13 H 0.06 2.33 7.58 -2.38 -0.02 2.31 16 14 N -0.71 -17.63 4.92 -442.40 -2.18 -19.81 16 15 C 0.51 12.97 7.51 87.66 0.66 13.63 16 16 O -0.58 -19.81 13.63 -3.05 -0.04 -19.85 16 17 C -0.13 -2.09 5.17 29.85 0.15 -1.94 16 18 C -0.07 -1.21 1.84 -10.79 -0.02 -1.23 16 19 C -0.12 -2.49 4.94 30.60 0.15 -2.34 16 20 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 21 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 22 C -0.12 -1.50 5.92 30.58 0.18 -1.32 16 23 C -0.11 -1.35 5.20 30.57 0.16 -1.19 16 24 C 0.10 3.17 3.14 30.67 0.10 3.26 16 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 26 O -0.57 -16.12 13.16 -148.98 -1.96 -18.08 16 27 C 0.10 4.01 3.83 86.37 0.33 4.34 16 28 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 33 H 0.41 7.88 8.60 -92.72 -0.80 7.08 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.38 5.95 -2.39 -0.01 1.37 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 47 H 0.39 8.35 9.08 -74.06 -0.67 7.68 16 48 H 0.03 1.22 7.07 -2.39 -0.02 1.21 16 49 H 0.07 2.85 4.50 -2.39 -0.01 2.84 16 Total: -1.00 -70.07 369.28 -0.58 -70.65 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.63 Total: 24.47 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.19 Total: 3.35 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -3.81 Total: -107.73 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -2.00 Total: -37.93 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.19 kcal Total: -70.07 -0.58 -70.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090057311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.425 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds