Wall clock time and date at job start Fri Apr 10 2020 22:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 H 1.08998 * 109.34625 * 301.12703 * 12 11 10 14 14 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 15 15 C 1.34781 * 119.99981 * 84.78441 * 14 12 11 16 16 O 1.21273 * 119.99996 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99675 * 179.97438 * 15 14 12 18 18 C 1.54239 * 108.89835 * 302.88621 * 17 15 14 19 19 C 1.50469 * 108.53039 * 159.26429 * 18 17 15 20 20 C 1.54066 * 112.49790 * 94.14762 * 19 18 17 21 21 C 1.54067 * 112.82069 * 318.28743 * 20 19 18 22 22 C 1.50475 * 112.49414 * 318.28957 * 21 20 19 23 23 C 1.45548 * 108.89280 * 180.02562 * 17 15 14 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 H 1.08999 * 109.49849 * 58.64620 * 24 12 11 26 26 O 1.42894 * 109.52519 * 178.73101 * 24 12 11 27 27 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 28 28 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 30 30 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 31 31 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 32 32 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 33 33 H 0.96997 * 120.00118 * 264.79365 * 14 12 11 34 34 H 1.08995 * 108.87304 * 61.39910 * 17 15 14 35 35 H 1.09003 * 109.63001 * 278.98104 * 18 17 15 36 36 H 1.09004 * 109.62590 * 39.55367 * 18 17 15 37 37 H 1.09009 * 108.87357 * 333.37513 * 19 18 17 38 38 H 1.08994 * 108.88070 * 214.93139 * 19 18 17 39 39 H 1.09000 * 108.81513 * 197.42613 * 20 19 18 40 40 H 1.09004 * 108.72735 * 79.08976 * 20 19 18 41 41 H 1.08992 * 108.88094 * 197.50615 * 21 20 19 42 42 H 1.09005 * 108.79506 * 79.00130 * 21 20 19 43 43 H 1.08998 * 109.62522 * 334.43483 * 22 21 20 44 44 H 1.09003 * 109.62394 * 213.85731 * 22 21 20 45 45 H 1.08998 * 108.89204 * 303.44195 * 23 17 15 46 46 H 1.08996 * 108.89266 * 62.03283 * 23 17 15 47 47 H 0.96697 * 114.00232 * 179.85473 * 26 24 12 48 48 H 1.09004 * 109.59094 * 246.19900 * 27 9 7 49 49 H 1.08996 * 109.58998 * 6.63654 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 1 6.2783 -1.3982 -1.4672 14 7 6.1713 -2.6584 -3.1399 15 6 7.2003 -2.0802 -3.7905 16 8 7.5951 -0.9854 -3.4494 17 6 7.8611 -2.7947 -4.9412 18 6 8.3695 -4.1662 -4.4519 19 6 8.5521 -5.0626 -5.6466 20 6 9.9954 -5.0402 -6.1852 21 6 10.6024 -3.6244 -6.2092 22 6 9.6243 -2.5867 -6.6894 23 6 8.9336 -1.9594 -5.4613 24 6 4.8755 -2.9898 -1.0921 25 1 4.1091 -3.5392 -1.6388 26 8 5.8667 -3.9015 -0.6144 27 6 4.2351 -2.2628 0.0946 28 1 -0.4850 0.8401 0.0004 29 1 2.9908 0.3501 -1.7559 30 1 4.5579 0.3822 -0.9097 31 1 3.7035 -1.5726 -3.0945 32 1 4.9277 -0.2876 -3.2372 33 1 5.8557 -3.5342 -3.4126 34 1 7.1236 -2.9534 -5.7279 35 1 9.3230 -4.0415 -3.9386 36 1 7.6395 -4.6061 -3.7723 37 1 7.8755 -4.7383 -6.4374 38 1 8.2970 -6.0838 -5.3637 39 1 9.9986 -5.4412 -7.1988 40 1 10.6145 -5.6775 -5.5538 41 1 11.4698 -3.6236 -6.8691 42 1 10.9262 -3.3640 -5.2014 43 1 8.8776 -3.0561 -7.3299 44 1 10.1544 -1.8137 -7.2460 45 1 8.5209 -0.9912 -5.7449 46 1 9.6764 -1.8103 -4.6777 47 1 5.5223 -4.5794 -0.0171 48 1 5.0116 -1.7874 0.6940 49 1 3.6841 -2.9771 0.7064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090138362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:27 Heat of formation + Delta-G solvation = -107.470954 kcal Electronic energy + Delta-G solvation = -27289.582160 eV Core-core repulsion = 23636.179423 eV Total energy + Delta-G solvation = -3653.402738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61665 -40.07087 -38.67412 -37.13297 -35.82692 -34.13694 -33.49088 -33.00488 -31.74397 -30.68010 -27.28672 -26.05762 -25.46603 -24.31860 -23.79833 -22.26335 -21.52466 -20.75333 -20.10713 -19.03978 -18.27739 -18.06477 -17.65406 -16.93769 -16.59563 -16.22001 -16.02894 -15.65041 -15.43516 -15.07806 -14.95756 -14.70161 -14.58924 -14.25735 -14.05007 -13.94809 -13.79334 -13.65281 -13.20964 -13.13103 -13.00371 -12.92672 -12.68131 -12.22108 -12.13285 -11.90896 -11.74875 -11.67666 -11.57164 -11.45287 -11.41762 -11.18567 -11.17440 -11.07040 -10.79623 -10.55971 -10.04960 -9.03799 -8.21547 -5.54736 1.26396 1.38153 1.45826 1.65293 2.15486 2.36517 2.89779 3.09731 3.33504 3.61529 3.67044 3.80111 3.83183 3.98579 4.07801 4.14020 4.21852 4.24569 4.27646 4.29276 4.38025 4.44065 4.46755 4.54764 4.65589 4.69946 4.79182 4.83669 4.88108 4.94225 5.00252 5.01279 5.04824 5.13448 5.22347 5.27535 5.32024 5.36630 5.38491 5.40520 5.47948 5.53376 5.62191 5.79575 6.07992 6.58903 6.77600 6.90717 7.29230 7.53811 7.94076 8.97523 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026224 B = 0.003241 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.486274 B = 8636.739074 C = 9230.702659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.025 4.025 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.308 1.308 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.613 5.613 10 C 0.123 3.877 11 C -0.127 4.127 12 C 0.167 3.833 13 H 0.061 0.939 14 N -0.703 5.703 15 C 0.507 3.493 16 O -0.590 6.590 17 C -0.089 4.089 18 C -0.103 4.103 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.104 4.104 24 C 0.102 3.898 25 H 0.072 0.928 26 O -0.567 6.567 27 C 0.119 3.881 28 H 0.263 0.737 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.397 0.603 48 H 0.031 0.969 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.471 -13.406 -13.874 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.221 4.221 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.236 1.236 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.339 5.339 10 C -0.003 4.003 11 C -0.168 4.168 12 C 0.061 3.939 13 H 0.079 0.921 14 N -0.354 5.354 15 C 0.295 3.705 16 O -0.470 6.470 17 C -0.110 4.110 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.142 4.142 24 C 0.040 3.960 25 H 0.089 0.911 26 O -0.374 6.374 27 C -0.007 4.007 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.250 0.750 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.247 0.753 48 H 0.049 0.951 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.013 -12.220 -13.970 27.295 hybrid contribution -0.684 0.797 0.791 1.315 sum 19.329 -11.424 -13.179 26.035 Atomic orbital electron populations 1.69928 1.07069 1.27230 1.55288 1.25783 0.95718 1.00376 1.00237 0.86123 0.78727 0.81313 0.77506 1.20433 1.23633 1.19303 1.18890 0.86151 0.93889 1.38833 0.91619 1.44403 1.07964 1.34158 1.47359 1.21331 0.96684 0.92164 0.90102 1.22229 0.97778 0.98695 0.98068 1.20621 0.93713 0.92710 0.86855 0.92075 1.45879 1.33950 1.22383 1.33150 1.21535 0.79169 0.85578 0.84199 1.90673 1.65094 1.23020 1.68242 1.20340 0.98939 0.96668 0.95042 1.21351 1.01650 0.92224 0.98825 1.21323 0.97346 0.99775 0.96893 1.21920 0.95780 0.96156 1.01500 1.21370 0.98516 0.94942 1.01084 1.21276 0.98834 0.98200 0.96161 1.20294 0.97364 0.98211 0.98286 1.22256 0.89400 0.89923 0.94379 0.91053 1.86450 1.37040 1.45399 1.68551 1.21764 0.92438 0.91691 0.94835 0.92803 0.92437 0.95749 0.90717 0.91480 0.74996 0.86799 0.91976 0.90776 0.91020 0.90809 0.91220 0.92203 0.91528 0.93215 0.90345 0.91376 0.93251 0.93315 0.75288 0.95124 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.97 21.65 0.30 -58.23 16 2 C -0.03 -1.47 5.23 84.86 0.44 -1.03 16 3 Si 0.93 47.04 24.34 68.60 1.67 48.71 16 4 H -0.28 -13.40 6.62 99.48 0.66 -12.74 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.27 -13.28 6.64 99.48 0.66 -12.62 16 7 C -0.25 -13.59 10.04 84.03 0.84 -12.75 16 8 H 0.07 3.82 8.06 -2.91 -0.02 3.80 16 9 N -0.61 -28.14 2.77 -699.10 -1.94 -30.08 16 10 C 0.12 5.38 4.20 86.36 0.36 5.75 16 11 C -0.13 -4.58 5.66 30.68 0.17 -4.41 16 12 C 0.17 5.38 2.11 45.03 0.10 5.47 16 13 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 14 N -0.70 -18.05 4.62 -442.35 -2.04 -20.10 16 15 C 0.51 14.07 7.09 87.66 0.62 14.69 16 16 O -0.59 -22.02 15.44 -3.01 -0.05 -22.06 16 17 C -0.09 -1.66 2.04 -13.39 -0.03 -1.69 16 18 C -0.10 -1.53 4.94 30.20 0.15 -1.38 16 19 C -0.12 -1.23 5.31 30.14 0.16 -1.07 16 20 C -0.12 -1.20 5.85 31.32 0.18 -1.02 16 21 C -0.12 -1.52 5.32 30.14 0.16 -1.36 16 22 C -0.11 -1.48 5.61 30.20 0.17 -1.31 16 23 C -0.10 -2.07 3.84 28.74 0.11 -1.96 16 24 C 0.10 2.97 3.15 30.67 0.10 3.07 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 O -0.57 -13.72 13.16 -148.98 -1.96 -15.68 16 27 C 0.12 4.32 6.14 86.37 0.53 4.86 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.06 2.75 4.49 -2.39 -0.01 2.74 16 30 H 0.02 1.10 7.07 -2.38 -0.02 1.08 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.41 8.08 7.77 -92.71 -0.72 7.36 16 34 H 0.11 1.69 7.46 -2.39 -0.02 1.67 16 35 H 0.06 1.08 6.97 -2.39 -0.02 1.06 16 36 H 0.07 1.08 6.94 -2.39 -0.02 1.06 16 37 H 0.07 0.67 6.63 -2.38 -0.02 0.65 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 0.75 6.62 -2.38 -0.02 0.74 16 43 H 0.08 0.90 6.98 -2.39 -0.02 0.88 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 1.16 7.87 -2.39 -0.02 1.14 16 46 H 0.05 1.15 7.39 -2.39 -0.02 1.14 16 47 H 0.40 6.14 9.08 -74.06 -0.67 5.47 16 48 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 Total: -1.00 -71.45 361.62 -0.48 -71.94 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.54 Total: 19.65 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.07 Total: 5.85 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.68 Total: -108.40 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -2.01 Total: -37.74 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -71.45 -0.48 -71.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090138362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.536 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds