Wall clock time and date at job start Fri Apr 10 2020 22:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48498 * 109.47440 * 269.99755 * 3 2 1 5 5 H 1.48496 * 109.47066 * 29.99978 * 3 2 1 6 6 H 1.48510 * 109.47229 * 149.99828 * 3 2 1 7 7 C 1.38813 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00168 * 163.08458 * 7 2 1 9 9 N 1.36936 * 119.99900 * 343.08757 * 7 2 1 10 10 C 1.46924 * 120.63373 * 331.80848 * 9 7 2 11 11 C 1.53162 * 108.76831 * 233.63195 * 10 9 7 12 12 C 1.53046 * 109.32869 * 305.34952 * 11 10 9 13 13 H 1.09001 * 109.45943 * 181.38422 * 12 11 10 14 14 N 1.46494 * 109.46007 * 301.36198 * 12 11 10 15 15 C 1.34779 * 120.00167 * 275.02848 * 14 12 11 16 16 O 1.21283 * 119.99832 * 359.97438 * 15 14 12 17 17 C 1.50692 * 120.00296 * 180.02562 * 15 14 12 18 18 C 1.50478 * 108.87940 * 57.01646 * 17 15 14 19 19 C 1.54239 * 108.52400 * 214.93057 * 18 17 15 20 20 C 1.45548 * 112.40436 * 280.01548 * 19 18 17 21 21 C 1.54238 * 112.40660 * 61.93653 * 20 19 18 22 22 C 1.50477 * 108.51875 * 280.00820 * 21 20 19 23 23 C 1.54071 * 112.49647 * 94.15680 * 22 21 20 24 24 C 1.53043 * 109.51955 * 61.37276 * 12 11 10 25 25 H 1.08997 * 109.49961 * 58.63246 * 24 12 11 26 26 O 1.42906 * 109.48937 * 178.69007 * 24 12 11 27 27 C 1.46926 * 120.63177 * 151.82758 * 9 7 2 28 28 H 0.97002 * 119.99950 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.58168 * 353.41657 * 10 9 7 30 30 H 1.08995 * 109.58780 * 113.69644 * 10 9 7 31 31 H 1.09000 * 109.47785 * 185.40395 * 11 10 9 32 32 H 1.09000 * 109.50207 * 65.31609 * 11 10 9 33 33 H 0.97003 * 120.00423 * 95.02095 * 14 12 11 34 34 H 1.09003 * 108.85396 * 298.54996 * 17 15 14 35 35 H 1.08995 * 109.62591 * 95.22228 * 18 17 15 36 36 H 1.08996 * 109.62347 * 334.63965 * 18 17 15 37 37 H 1.08999 * 108.89683 * 159.26276 * 19 18 17 38 38 H 1.08997 * 108.90111 * 40.76821 * 19 18 17 39 39 H 1.09002 * 108.89442 * 182.69318 * 20 19 18 40 40 H 1.09003 * 108.89198 * 301.18397 * 20 19 18 41 41 H 1.09000 * 109.62549 * 39.71461 * 21 20 19 42 42 H 1.08995 * 109.62694 * 160.30083 * 21 20 19 43 43 H 1.09002 * 108.87383 * 214.93148 * 22 21 20 44 44 H 1.08999 * 108.88040 * 333.37441 * 22 21 20 45 45 H 1.08994 * 108.81654 * 79.14158 * 23 22 21 46 46 H 1.09000 * 108.81388 * 197.53393 * 23 22 21 47 47 H 0.96704 * 113.99742 * 179.97438 * 26 24 12 48 48 H 1.09003 * 109.58465 * 6.58415 * 27 9 7 49 49 H 1.09004 * 109.70808 * 246.22711 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3622 0.3460 10 6 0.2263 -2.3401 1.2681 11 6 0.4985 -3.3187 2.4145 12 6 0.8130 -4.7006 1.8369 13 1 0.9830 -5.4046 2.6515 14 7 -0.3163 -5.1584 1.0238 15 6 -1.3586 -5.7817 1.6083 16 8 -1.3613 -5.9641 2.8073 17 6 -2.5201 -6.2531 0.7719 18 6 -2.0071 -7.1844 -0.2930 19 6 -2.8484 -6.9801 -1.5694 20 6 -4.1247 -7.6772 -1.5101 21 6 -5.0191 -7.1694 -0.3607 22 6 -4.5575 -7.8072 0.9216 23 6 -3.5573 -6.9243 1.6924 24 6 2.0681 -4.6169 0.9651 25 1 2.9033 -4.2534 1.5637 26 8 2.3787 -5.9135 0.4508 27 6 1.8138 -3.6529 -0.1979 28 1 -0.4850 0.8401 -0.0004 29 1 0.0993 -1.3343 1.6686 30 1 -0.6773 -2.6386 0.7367 31 1 -0.3819 -3.3835 3.0538 32 1 1.3483 -2.9668 2.9993 33 1 -0.3141 -5.0128 0.0648 34 1 -2.9813 -5.3902 0.2914 35 1 -2.1013 -8.2158 0.0464 36 1 -0.9617 -6.9592 -0.5035 37 1 -2.2846 -7.3483 -2.4265 38 1 -3.0342 -5.9144 -1.7031 39 1 -4.6491 -7.5345 -2.4550 40 1 -3.9390 -8.7420 -1.3689 41 1 -4.9339 -6.0856 -0.2820 42 1 -6.0557 -7.4451 -0.5543 43 1 -5.4248 -7.9932 1.5551 44 1 -4.0814 -8.7600 0.6902 45 1 -4.1095 -6.1493 2.2238 46 1 -3.0313 -7.5422 2.4202 47 1 3.1646 -5.9354 -0.1124 48 1 2.7343 -3.5133 -0.7648 49 1 1.0418 -4.0622 -0.8497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090138363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:30 Heat of formation + Delta-G solvation = -106.707196 kcal Electronic energy + Delta-G solvation = -27838.441464 eV Core-core repulsion = 24185.071846 eV Total energy + Delta-G solvation = -3653.369619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57140 -39.95490 -38.66905 -36.94459 -35.61791 -33.86026 -33.31771 -32.97833 -31.60247 -30.14273 -27.31500 -26.10757 -25.71847 -23.98245 -23.62409 -22.38857 -21.43248 -20.31585 -20.04890 -18.87544 -18.38543 -17.95604 -17.04885 -16.82984 -16.37420 -16.04514 -15.91388 -15.63665 -15.32932 -15.26475 -14.87070 -14.71528 -14.44433 -14.31643 -13.90295 -13.82961 -13.50235 -13.26577 -13.10349 -13.01611 -12.91262 -12.72204 -12.39894 -12.23918 -12.17419 -11.99841 -11.84088 -11.66537 -11.55866 -11.32435 -11.27885 -11.21511 -11.16787 -11.03139 -10.58053 -10.49861 -9.97400 -8.71153 -7.89957 -5.36260 1.46813 1.49869 1.58150 1.70034 2.25078 2.49281 3.14890 3.27009 3.64505 3.65411 3.71235 3.77795 3.89766 4.05666 4.18689 4.21168 4.22916 4.30494 4.36479 4.37281 4.43053 4.49651 4.52316 4.65276 4.69040 4.86701 4.92207 4.94396 4.99346 5.03730 5.08756 5.13077 5.14374 5.25893 5.31943 5.36249 5.39628 5.40190 5.44981 5.53637 5.57276 5.60450 5.62967 5.68818 6.34874 6.60016 6.88582 7.11479 7.29374 7.80257 8.31760 9.16384 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.003840 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.216698 B = 7289.828835 C = 7755.951108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.601 5.601 10 C 0.187 3.813 11 C -0.140 4.140 12 C 0.167 3.833 13 H 0.071 0.929 14 N -0.701 5.701 15 C 0.509 3.491 16 O -0.588 6.588 17 C -0.095 4.095 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.096 4.096 24 C 0.096 3.904 25 H 0.068 0.932 26 O -0.569 6.569 27 C 0.119 3.881 28 H 0.250 0.750 29 H 0.052 0.948 30 H 0.004 0.996 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.405 0.595 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.395 0.605 48 H 0.069 0.931 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -15.893 -3.059 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.792 3.208 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.090 0.910 9 N -0.326 5.326 10 C 0.061 3.939 11 C -0.180 4.180 12 C 0.062 3.938 13 H 0.089 0.911 14 N -0.351 5.351 15 C 0.297 3.703 16 O -0.469 6.469 17 C -0.116 4.116 18 C -0.144 4.144 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.134 4.134 24 C 0.035 3.965 25 H 0.086 0.914 26 O -0.377 6.377 27 C -0.007 4.007 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.022 0.978 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.242 0.758 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.245 0.755 48 H 0.088 0.912 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.296 -16.054 -1.896 17.011 hybrid contribution 0.814 1.671 -0.472 1.918 sum -4.481 -14.384 -2.368 15.251 Atomic orbital electron populations 1.70170 1.06695 1.25897 1.54938 1.25760 0.95931 1.01432 1.00944 0.85332 0.78135 0.79705 0.77580 1.21030 1.22276 1.19473 1.19503 0.92980 0.85712 1.41401 0.91028 1.44151 1.35795 1.02028 1.50576 1.20448 0.88090 0.96935 0.88453 1.22378 1.01214 0.95386 0.99022 1.20670 0.85119 0.94784 0.93241 0.91113 1.45930 1.19293 1.58187 1.11737 1.21347 0.84186 0.76370 0.88373 1.90617 1.80620 1.58677 1.16967 1.21177 0.93139 1.00705 0.96586 1.21366 0.99447 0.99458 0.94103 1.20477 0.96650 1.01204 0.96903 1.20491 0.95474 1.00481 0.98909 1.21394 0.99614 1.00413 0.94425 1.21310 0.98006 0.98654 0.96742 1.21708 0.95574 0.99054 0.97042 1.22325 0.95556 0.83344 0.95251 0.91397 1.86456 1.52064 1.28698 1.70439 1.21661 0.98780 0.86186 0.94057 0.94124 0.92914 0.97815 0.92648 0.91328 0.75806 0.88560 0.90467 0.91735 0.90926 0.92515 0.91382 0.91420 0.92513 0.90691 0.91339 0.91343 0.93042 0.92633 0.75508 0.91249 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.47 11.20 21.65 0.24 -53.23 16 2 C -0.04 -2.40 4.92 84.86 0.42 -1.99 16 3 Si 0.96 43.39 29.59 68.60 2.03 45.42 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.27 -13.82 9.58 84.03 0.81 -13.02 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.60 -28.16 2.99 -699.17 -2.09 -30.25 16 10 C 0.19 8.82 5.04 86.35 0.44 9.25 16 11 C -0.14 -5.60 5.77 30.66 0.18 -5.42 16 12 C 0.17 5.96 2.47 45.02 0.11 6.07 16 13 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 14 N -0.70 -23.36 3.73 -442.41 -1.65 -25.01 16 15 C 0.51 17.18 7.03 87.65 0.62 17.80 16 16 O -0.59 -23.84 15.22 -3.04 -0.05 -23.89 16 17 C -0.09 -2.44 2.04 -12.00 -0.02 -2.46 16 18 C -0.11 -2.23 5.04 30.20 0.15 -2.08 16 19 C -0.11 -2.00 5.26 28.74 0.15 -1.85 16 20 C -0.12 -1.73 5.26 28.74 0.15 -1.58 16 21 C -0.12 -1.95 5.61 30.20 0.17 -1.78 16 22 C -0.11 -1.94 5.31 30.14 0.16 -1.78 16 23 C -0.10 -2.33 4.80 31.32 0.15 -2.17 16 24 C 0.10 3.08 3.36 30.67 0.10 3.19 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 O -0.57 -15.29 13.21 -148.98 -1.97 -17.25 16 27 C 0.12 4.39 5.84 86.36 0.50 4.90 16 28 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.05 2.87 6.06 -2.39 -0.01 2.86 16 30 H 0.00 0.19 7.74 -2.39 -0.02 0.17 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.41 12.89 6.17 -92.71 -0.57 12.32 16 34 H 0.10 2.46 6.62 -2.39 -0.02 2.45 16 35 H 0.08 1.54 6.98 -2.39 -0.02 1.52 16 36 H 0.06 1.47 6.76 -2.39 -0.02 1.45 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.09 7.47 -2.39 -0.02 1.07 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.92 7.47 -2.39 -0.02 0.90 16 41 H 0.06 1.05 6.97 -2.39 -0.02 1.03 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.12 6.63 -2.39 -0.02 1.10 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.54 7.34 -2.39 -0.02 1.52 16 47 H 0.40 6.98 9.08 -74.05 -0.67 6.31 16 48 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 49 H 0.03 0.92 6.65 -2.38 -0.02 0.91 16 Total: -1.00 -65.19 363.38 0.30 -64.89 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.29 Total: 32.24 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.08 Total: 7.08 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -3.50 Total: -108.49 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -2.01 Total: -41.14 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.19 0.30 -64.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090138363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.817 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds