Wall clock time and date at job start Fri Apr 10 2020 22:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47675 * 272.90813 * 3 2 1 5 5 H 1.48506 * 109.46699 * 32.90898 * 3 2 1 6 6 H 1.48503 * 109.47131 * 152.90249 * 3 2 1 7 7 C 1.38814 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99414 * 339.35512 * 7 2 1 9 9 N 1.36935 * 119.99965 * 159.35699 * 7 2 1 10 10 C 1.46930 * 120.62425 * 152.62303 * 9 7 2 11 11 C 1.53189 * 108.77579 * 126.37007 * 10 9 7 12 12 C 1.53044 * 109.33949 * 54.61391 * 11 10 9 13 13 H 1.08999 * 109.45951 * 58.67553 * 12 11 10 14 14 N 1.46501 * 109.46246 * 178.63193 * 12 11 10 15 15 C 1.34780 * 119.99747 * 275.00095 * 14 12 11 16 16 O 1.21273 * 120.00002 * 0.02562 * 15 14 12 17 17 C 1.50698 * 119.99756 * 179.97438 * 15 14 12 18 18 C 1.54244 * 108.89852 * 302.88480 * 17 15 14 19 19 C 1.50474 * 108.52622 * 159.26210 * 18 17 15 20 20 C 1.54069 * 112.49620 * 94.15168 * 19 18 17 21 21 C 1.54062 * 112.81801 * 318.28453 * 20 19 18 22 22 C 1.50478 * 112.49421 * 318.28238 * 21 20 19 23 23 C 1.45541 * 108.89863 * 179.97438 * 17 15 14 24 24 C 1.53035 * 109.53867 * 298.68395 * 12 11 10 25 25 H 1.08995 * 109.50175 * 301.34857 * 24 12 11 26 26 O 1.42907 * 109.49728 * 181.28171 * 24 12 11 27 27 C 1.46918 * 120.63150 * 332.59628 * 9 7 2 28 28 H 0.96995 * 119.99674 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58993 * 6.57913 * 10 9 7 30 30 H 1.09009 * 109.70082 * 246.22182 * 10 9 7 31 31 H 1.09000 * 109.50005 * 174.57916 * 11 10 9 32 32 H 1.08995 * 109.49634 * 294.64724 * 11 10 9 33 33 H 0.97004 * 119.99892 * 94.99466 * 14 12 11 34 34 H 1.09007 * 108.87351 * 61.39544 * 17 15 14 35 35 H 1.09003 * 109.62924 * 278.97796 * 18 17 15 36 36 H 1.08999 * 109.62791 * 39.55030 * 18 17 15 37 37 H 1.08999 * 108.87821 * 333.37358 * 19 18 17 38 38 H 1.09002 * 108.87869 * 214.92525 * 19 18 17 39 39 H 1.09005 * 108.81160 * 197.42206 * 20 19 18 40 40 H 1.08999 * 108.72690 * 79.08799 * 20 19 18 41 41 H 1.08996 * 108.87823 * 197.50969 * 21 20 19 42 42 H 1.08991 * 108.80096 * 79.00832 * 21 20 19 43 43 H 1.09002 * 109.62759 * 334.44930 * 22 21 20 44 44 H 1.08994 * 109.79270 * 213.95565 * 22 21 20 45 45 H 1.08993 * 108.89383 * 303.44942 * 23 17 15 46 46 H 1.09006 * 108.89022 * 62.03210 * 23 17 15 47 47 H 0.96696 * 113.99663 * 180.12917 * 26 24 12 48 48 H 1.08997 * 109.58907 * 353.42168 * 27 9 7 49 49 H 1.09009 * 109.58478 * 113.70522 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4363 2.0820 -1.3982 5 1 1.4797 2.6341 0.7607 6 1 3.5772 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3288 9 7 3.3137 -1.2400 -0.4186 10 6 4.2349 -2.2633 0.0944 11 6 4.8745 -2.9905 -1.0925 12 6 5.5281 -1.9657 -2.0224 13 1 6.2780 -1.4000 -1.4694 14 7 6.1689 -2.6608 -3.1415 15 6 7.4197 -3.1446 -3.0071 16 8 8.0145 -3.0048 -1.9595 17 6 8.0785 -3.8601 -4.1581 18 6 7.1930 -5.0509 -4.5788 19 6 7.5517 -5.4392 -5.9876 20 6 8.5984 -6.5685 -6.0395 21 6 9.7221 -6.3898 -5.0008 22 6 10.1877 -4.9627 -4.8962 23 6 9.4128 -4.2766 -3.7526 24 6 4.4617 -1.0084 -2.5594 25 1 3.6986 -1.5757 -3.0922 26 8 5.0681 -0.0704 -3.4508 27 6 3.8174 -0.2586 -1.3891 28 1 -0.4849 0.8400 0.0004 29 1 3.6839 -2.9772 0.7065 30 1 5.0120 -1.7903 0.6949 31 1 5.6309 -3.6858 -0.7285 32 1 4.1077 -3.5401 -1.6385 33 1 5.6928 -2.7730 -3.9793 34 1 8.1643 -3.1715 -4.9987 35 1 7.3704 -5.8934 -3.9103 36 1 6.1434 -4.7601 -4.5351 37 1 7.9496 -4.5655 -6.5038 38 1 6.6499 -5.7704 -6.5026 39 1 9.0408 -6.5923 -7.0355 40 1 8.0973 -7.5188 -5.8553 41 1 10.5675 -7.0166 -5.2845 42 1 9.3550 -6.7133 -4.0269 43 1 9.9910 -4.4436 -5.8343 44 1 11.2558 -4.9378 -4.6809 45 1 9.9712 -3.4004 -3.4233 46 1 9.3268 -4.9737 -2.9189 47 1 4.4495 0.5699 -3.8282 48 1 2.9909 0.3501 -1.7557 49 1 4.5584 0.3816 -0.9102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090138365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:39 Heat of formation + Delta-G solvation = -107.272253 kcal Electronic energy + Delta-G solvation = -27317.661004 eV Core-core repulsion = 23664.266882 eV Total energy + Delta-G solvation = -3653.394122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61327 -40.09669 -38.67813 -37.05388 -35.89842 -34.20833 -33.47740 -32.99148 -31.69310 -30.67476 -27.27584 -26.06074 -25.50254 -24.60705 -23.45178 -22.30500 -21.38944 -20.82217 -20.10395 -19.08694 -18.31651 -18.17577 -17.71890 -16.87456 -16.50745 -16.14052 -16.11787 -15.49468 -15.30490 -15.27642 -14.85493 -14.69674 -14.59774 -14.49230 -14.07685 -13.99972 -13.82512 -13.68578 -13.11696 -13.09385 -12.98018 -12.72004 -12.51411 -12.38095 -12.16454 -12.02682 -11.75379 -11.72888 -11.57303 -11.44307 -11.38553 -11.18381 -11.12844 -11.06969 -10.81821 -10.54041 -10.04899 -9.04300 -8.20771 -5.54635 1.23747 1.40213 1.48069 1.66414 2.15439 2.36021 2.86689 3.11673 3.31116 3.61396 3.68452 3.76908 3.83445 3.98497 4.05143 4.14201 4.22257 4.24800 4.28307 4.32761 4.37749 4.44507 4.47110 4.55439 4.65389 4.68621 4.78192 4.87274 4.89958 4.95145 4.98556 5.01200 5.04890 5.13816 5.27458 5.28375 5.31989 5.37014 5.38758 5.40894 5.48506 5.53612 5.62518 5.80078 6.08880 6.59130 6.70150 6.85473 7.29240 7.53797 7.93861 8.98568 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.003119 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.530527 B = 8974.932949 C = 9044.823525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.028 4.028 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.310 1.310 6 H -0.272 1.272 7 C -0.251 4.251 8 H 0.060 0.940 9 N -0.613 5.613 10 C 0.144 3.856 11 C -0.125 4.125 12 C 0.167 3.833 13 H 0.062 0.938 14 N -0.704 5.704 15 C 0.509 3.491 16 O -0.588 6.588 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.103 4.103 24 C 0.098 3.902 25 H 0.072 0.928 26 O -0.569 6.569 27 C 0.097 3.903 28 H 0.264 0.736 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.394 0.606 48 H 0.066 0.934 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.857 -10.683 -16.443 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.223 4.223 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.381 4.381 8 H 0.078 0.922 9 N -0.339 5.339 10 C 0.018 3.982 11 C -0.165 4.165 12 C 0.061 3.939 13 H 0.080 0.920 14 N -0.355 5.355 15 C 0.297 3.703 16 O -0.468 6.468 17 C -0.109 4.109 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.141 4.141 24 C 0.037 3.963 25 H 0.090 0.910 26 O -0.376 6.376 27 C -0.029 4.029 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.244 0.756 48 H 0.084 0.916 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 18.675 -10.837 -15.556 26.612 hybrid contribution -0.896 1.419 0.300 1.705 sum 17.780 -9.418 -15.256 25.250 Atomic orbital electron populations 1.69943 1.07208 1.27339 1.55110 1.25848 0.95780 1.00572 1.00136 0.86038 0.78347 0.80698 0.78064 1.19140 1.23884 1.19726 1.18880 0.86207 0.93892 1.39088 0.92206 1.44406 1.08016 1.34343 1.47125 1.21082 0.91898 0.90779 0.94396 1.22208 0.99683 0.97658 0.96946 1.20639 0.93388 0.91947 0.87907 0.91984 1.45898 1.15804 1.57193 1.16583 1.21487 0.81006 0.77967 0.89854 1.90669 1.64751 1.59793 1.31590 1.20322 0.96221 0.98429 0.95954 1.21373 0.98455 0.96095 0.98318 1.21323 0.99374 0.99414 0.95283 1.21919 0.95745 0.98424 0.99278 1.21361 0.98462 0.96556 0.99490 1.21271 0.99222 0.95984 0.98020 1.20288 0.94402 1.00652 0.98755 1.22388 0.93646 0.90088 0.90190 0.91042 1.86428 1.40500 1.47644 1.63060 1.22051 0.97253 0.92684 0.90887 0.92734 0.91323 0.95413 0.90791 0.90878 0.75132 0.87096 0.91609 0.90888 0.91085 0.90926 0.91289 0.92206 0.91538 0.93063 0.90507 0.91325 0.93269 0.93072 0.75640 0.91586 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 13.97 21.65 0.30 -57.64 16 2 C -0.03 -1.58 5.23 84.86 0.44 -1.14 16 3 Si 0.94 45.42 24.34 68.60 1.67 47.09 16 4 H -0.27 -11.65 6.62 99.48 0.66 -10.99 16 5 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 6 H -0.27 -13.13 6.64 99.48 0.66 -12.47 16 7 C -0.25 -13.84 10.03 84.03 0.84 -12.99 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.61 -28.24 2.77 -699.09 -1.94 -30.17 16 10 C 0.14 5.65 6.52 86.36 0.56 6.21 16 11 C -0.12 -4.10 5.65 30.67 0.17 -3.92 16 12 C 0.17 5.38 2.12 45.02 0.10 5.47 16 13 H 0.06 2.37 7.57 -2.39 -0.02 2.35 16 14 N -0.70 -18.09 4.62 -442.41 -2.04 -20.13 16 15 C 0.51 13.82 7.09 87.66 0.62 14.44 16 16 O -0.59 -21.27 15.44 -3.01 -0.05 -21.31 16 17 C -0.09 -1.62 2.04 -13.40 -0.03 -1.65 16 18 C -0.10 -1.53 4.94 30.20 0.15 -1.38 16 19 C -0.12 -1.25 5.31 30.14 0.16 -1.09 16 20 C -0.12 -1.21 5.85 31.31 0.18 -1.02 16 21 C -0.12 -1.48 5.32 30.14 0.16 -1.32 16 22 C -0.11 -1.44 5.61 30.20 0.17 -1.27 16 23 C -0.10 -2.00 3.84 28.73 0.11 -1.89 16 24 C 0.10 3.19 3.14 30.67 0.10 3.29 16 25 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 26 O -0.57 -16.16 13.16 -148.98 -1.96 -18.12 16 27 C 0.10 4.00 3.83 86.37 0.33 4.33 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 30 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.41 8.30 7.77 -92.71 -0.72 7.58 16 34 H 0.11 1.68 7.46 -2.38 -0.02 1.66 16 35 H 0.07 1.08 6.97 -2.39 -0.02 1.06 16 36 H 0.07 1.02 6.94 -2.39 -0.02 1.00 16 37 H 0.07 0.68 6.63 -2.39 -0.02 0.66 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 0.75 6.62 -2.39 -0.02 0.73 16 43 H 0.08 0.87 6.98 -2.39 -0.02 0.86 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 1.13 7.87 -2.39 -0.02 1.11 16 46 H 0.05 1.16 7.39 -2.38 -0.02 1.14 16 47 H 0.39 8.34 9.08 -74.06 -0.67 7.66 16 48 H 0.07 2.87 4.49 -2.39 -0.01 2.86 16 49 H 0.03 1.25 7.07 -2.38 -0.02 1.23 16 Total: -1.00 -69.93 361.62 -0.48 -70.40 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.54 Total: 23.81 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 4.07 Total: 6.07 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -3.68 Total: -107.95 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -2.01 Total: -39.43 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -69.93 -0.48 -70.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090138365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.868 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds