Wall clock time and date at job start Fri Apr 10 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48502 * 109.47018 * 239.99742 * 3 2 1 5 5 H 1.48503 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46651 * 119.99939 * 3 2 1 7 7 C 1.38816 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 162.76475 * 7 2 1 9 9 N 1.36931 * 119.99584 * 343.04333 * 7 2 1 10 10 C 1.46926 * 120.63544 * 332.05021 * 9 7 2 11 11 C 1.53192 * 108.77281 * 233.58734 * 10 9 7 12 12 C 1.53034 * 109.31694 * 305.36145 * 11 10 9 13 13 H 1.08995 * 109.46191 * 301.34806 * 12 11 10 14 14 N 1.46500 * 109.46263 * 181.37220 * 12 11 10 15 15 C 1.34781 * 119.99808 * 85.00278 * 14 12 11 16 16 O 1.21280 * 119.99951 * 359.97438 * 15 14 12 17 17 C 1.50694 * 119.99926 * 180.02562 * 15 14 12 18 18 C 1.52996 * 109.47218 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47347 * 180.02562 * 18 17 15 20 20 C 1.54267 * 110.03304 * 292.16324 * 19 18 17 21 21 C 1.54883 * 104.19831 * 217.10722 * 20 19 18 22 22 C 1.54888 * 102.74818 * 37.93859 * 21 20 19 23 23 C 1.53875 * 110.03321 * 174.99481 * 19 18 17 24 24 C 1.53040 * 109.53593 * 61.36540 * 12 11 10 25 25 H 1.08999 * 109.49785 * 58.59151 * 24 12 11 26 26 O 1.42906 * 109.49786 * 178.64933 * 24 12 11 27 27 C 1.46934 * 120.62787 * 151.77333 * 9 7 2 28 28 H 0.97002 * 119.99822 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.58471 * 353.37333 * 10 9 7 30 30 H 1.08992 * 109.58613 * 113.79868 * 10 9 7 31 31 H 1.09004 * 109.49503 * 65.31731 * 11 10 9 32 32 H 1.09006 * 109.49655 * 185.37546 * 11 10 9 33 33 H 0.96994 * 120.00078 * 265.00053 * 14 12 11 34 34 H 1.09005 * 109.47226 * 299.99672 * 17 15 14 35 35 H 1.08998 * 109.47510 * 59.99332 * 17 15 14 36 36 H 1.09003 * 109.46690 * 299.99387 * 18 17 15 37 37 H 1.08991 * 109.47558 * 59.99624 * 18 17 15 38 38 H 1.09002 * 110.01684 * 53.60659 * 19 18 17 39 39 H 1.08998 * 110.48469 * 335.78930 * 20 19 18 40 40 H 1.09001 * 110.48363 * 98.42174 * 20 19 18 41 41 H 1.09008 * 110.75356 * 279.62784 * 21 20 19 42 42 H 1.08997 * 110.75688 * 156.25738 * 21 20 19 43 43 H 1.09001 * 110.48247 * 203.37974 * 22 21 20 44 44 H 1.09000 * 110.48395 * 80.74369 * 22 21 20 45 45 H 1.08998 * 110.03458 * 238.56818 * 23 19 18 46 46 H 1.09002 * 110.03273 * 0.02562 * 23 19 18 47 47 H 0.96701 * 113.99558 * 179.97438 * 26 24 12 48 48 H 1.09004 * 109.58630 * 246.20206 * 27 9 7 49 49 H 1.09005 * 109.58509 * 6.61946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3702 -2.3620 0.3469 10 6 0.2238 -2.3389 1.2656 11 6 0.4932 -3.3155 2.4147 12 6 0.8104 -4.6981 1.8403 13 1 -0.0279 -5.0402 1.2335 14 7 1.0363 -5.6423 2.9373 15 6 -0.0092 -6.2653 3.5164 16 8 -1.1371 -6.0437 3.1296 17 6 0.2232 -7.2362 4.6452 18 6 -1.1187 -7.7985 5.1186 19 6 -0.8828 -8.7838 6.2652 20 6 -0.1545 -10.0390 5.7419 21 6 -0.7834 -11.2052 6.5440 22 6 -2.2732 -10.7918 6.6370 23 6 -2.2299 -9.2624 6.8344 24 6 2.0679 -4.6152 0.9720 25 1 2.9010 -4.2496 1.5723 26 8 2.3813 -5.9127 0.4615 27 6 1.8130 -3.6528 -0.1978 28 1 -0.4850 0.8401 -0.0004 29 1 0.0951 -1.3325 1.6639 30 1 -0.6776 -2.6413 0.7327 31 1 1.3411 -2.9620 3.0014 32 1 -0.3888 -3.3795 3.0521 33 1 1.9384 -5.8193 3.2469 34 1 0.8565 -8.0525 4.2978 35 1 0.7140 -6.7220 5.4715 36 1 -1.7523 -6.9824 5.4660 37 1 -1.6090 -8.3128 4.2922 38 1 -0.2935 -8.3091 7.0497 39 1 -0.3360 -10.1683 4.6749 40 1 0.9148 -9.9709 5.9423 41 1 -0.3391 -11.2747 7.5371 42 1 -0.6765 -12.1466 6.0051 43 1 -2.7500 -11.2733 7.4908 44 1 -2.7969 -11.0429 5.7147 45 1 -2.2940 -9.0209 7.8953 46 1 -3.0517 -8.7931 6.2935 47 1 3.1688 -5.9349 -0.0992 48 1 1.0385 -4.0602 -0.8477 49 1 2.7331 -3.5135 -0.7655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099644956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:43 Heat of formation + Delta-G solvation = -97.070102 kcal Electronic energy + Delta-G solvation = -26282.729141 eV Core-core repulsion = 22629.777418 eV Total energy + Delta-G solvation = -3652.951723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83269 -38.66532 -37.79394 -35.40324 -34.26224 -33.22832 -31.89849 -30.08714 -29.01794 -28.69122 -27.91347 -25.18955 -23.46762 -22.33774 -21.68279 -20.92239 -20.03894 -19.74495 -19.36665 -17.24746 -16.71400 -16.49388 -16.17734 -15.67988 -15.48290 -15.07826 -14.80738 -14.05274 -13.93654 -13.79394 -13.57268 -13.45957 -13.24918 -12.81831 -12.74808 -12.29886 -12.25168 -11.97663 -11.56289 -11.46681 -11.34602 -11.25369 -11.12343 -10.97519 -10.86427 -10.85592 -10.71691 -10.65795 -10.49870 -10.33735 -10.26471 -9.94704 -9.77720 -9.68387 -9.33752 -8.70274 -8.43675 -6.77412 -5.85153 -3.29740 2.93663 3.34263 3.40787 3.41370 3.46058 4.34250 4.37156 4.39833 4.49184 4.53917 4.90500 4.94517 5.04066 5.21478 5.29404 5.30771 5.33301 5.36861 5.41988 5.46746 5.46898 5.51054 5.57441 5.61953 5.64324 5.72770 5.77015 5.86748 5.93293 5.98458 6.05363 6.08523 6.13770 6.17623 6.31016 6.36094 6.48852 6.55742 6.67621 6.77523 6.92210 7.29393 7.60655 7.72092 7.82165 7.92055 8.37416 8.54359 9.12757 9.75090 10.31316 11.23255 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002481 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.120418 B =11283.172833 C =11811.719669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.162 3.838 13 H 0.086 0.914 14 N -0.719 5.719 15 C 0.508 3.492 16 O -0.544 6.544 17 C -0.140 4.140 18 C -0.096 4.096 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.122 4.122 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.571 6.571 27 C 0.121 3.879 28 H 0.256 0.744 29 H 0.093 0.907 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.373 0.627 48 H 0.029 0.971 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -18.983 12.659 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.058 3.942 13 H 0.104 0.896 14 N -0.368 5.368 15 C 0.295 3.705 16 O -0.422 6.422 17 C -0.180 4.180 18 C -0.133 4.133 19 C -0.112 4.112 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.160 4.160 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.376 6.376 27 C -0.007 4.007 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.219 0.781 48 H 0.047 0.953 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.737 -18.818 12.695 22.712 hybrid contribution 1.442 1.019 -0.215 1.779 sum 2.179 -17.799 12.480 21.847 Atomic orbital electron populations 1.70026 1.05301 1.25878 1.53059 1.25090 0.95309 0.98563 1.00482 0.86337 0.78901 0.83166 0.78138 1.20816 1.21547 1.20953 1.19116 0.92585 0.84623 1.42651 0.91581 1.44055 1.35782 1.01198 1.50183 1.20831 0.88638 0.98321 0.87716 1.22590 1.00916 0.94409 1.00690 1.20970 0.97377 0.89269 0.86573 0.89594 1.46132 1.09275 1.44717 1.36709 1.20667 0.85025 0.81165 0.83685 1.90700 1.22857 1.64477 1.64134 1.21702 1.00361 0.98669 0.97273 1.21459 0.95730 0.98495 0.97664 1.21827 0.96289 0.95664 0.97395 1.22497 0.99281 0.94179 1.00040 1.22500 0.95662 0.98105 1.00106 1.22363 0.96670 0.95812 1.01477 1.22214 0.97466 0.95586 1.00703 1.22868 0.96008 0.83060 0.96174 0.92646 1.86481 1.50468 1.30500 1.70122 1.21616 0.98747 0.87443 0.92889 0.93361 0.88887 0.95847 0.92441 0.92000 0.77189 0.89202 0.89318 0.91204 0.91128 0.91096 0.91321 0.91783 0.91715 0.91817 0.92003 0.91674 0.92004 0.91447 0.78065 0.95319 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.18 55.49 0.62 -25.32 16 2 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 3 Si 0.91 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.97 9.58 -15.06 -0.14 -7.12 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.49 2.99 -172.05 -0.51 -15.00 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 12 C 0.16 2.96 2.12 -67.89 -0.14 2.82 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 N -0.72 -10.73 4.92 -53.77 -0.26 -11.00 16 15 C 0.51 7.78 7.79 -10.99 -0.09 7.69 16 16 O -0.54 -10.67 15.64 5.56 0.09 -10.58 16 17 C -0.14 -1.47 5.55 -27.89 -0.15 -1.63 16 18 C -0.10 -1.02 3.63 -26.73 -0.10 -1.11 16 19 C -0.09 -0.78 2.93 -89.50 -0.26 -1.04 16 20 C -0.12 -0.94 5.53 -25.07 -0.14 -1.08 16 21 C -0.13 -0.89 6.91 -24.74 -0.17 -1.06 16 22 C -0.13 -0.93 6.83 -25.07 -0.17 -1.10 16 23 C -0.12 -0.99 6.46 -25.61 -0.17 -1.15 16 24 C 0.08 1.37 3.16 -26.39 -0.08 1.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -8.57 13.16 -35.23 -0.46 -9.03 16 27 C 0.12 2.47 6.17 -3.48 -0.02 2.45 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.39 4.81 8.60 -40.82 -0.35 4.45 16 34 H 0.09 0.80 7.51 -51.93 -0.39 0.41 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 7.76 -51.93 -0.40 0.17 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 47 H 0.37 4.00 9.09 45.56 0.41 4.41 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -31.87 381.62 -9.83 -41.70 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.13 Total: 7.16 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.89 Total: 0.06 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.16 Total: -51.32 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.38 Total: -19.61 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.87 -9.83 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099644956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.371 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds